Collagen fingerprinting for the species identification of archaeological amphibian remains

Amphibians are well known as being one of the main groups of animals today most threatened by environmental changes but they are also some of the least well understood of all terrestrial vertebrates. This gap in knowledge is much greater as we look further back into the relatively recent past, despite representing an invaluable resources in archaeological and palaeontological assemblages that are more indicative of palaeoclimate conditions than most other vertebrate taxa. This in part stems from their remains being typically much less studied, partly due to the less common forms of expertise required for identifications based on skeletal morphology – the most frequently observed tissue that remains in ancient assemblages. Here we apply a method of biomolecular species identification by collagen peptide mass fingerprinting to the British Late Pleistocene assemblage of Pin Hole Cave (Creswell Crags, UK) as well as a range of relevant extant taxa for comparison. Our results demonstrate the ability to separate at the species level with all modern taxa investigated, allowing for the identification of these archaeological remains to the amphibian taxa known to exist in Late Pleistocene Britain. Analyses of the Pin Hole assemblage found a dominance of the two species previously known from the site (common frogs and toads: Rana temporaria and Bufo bufo, respectively) and also a small number of the rarer natterjack toad (Epidalea calamita) not previously identified in the Creswell Crags region but known from other sites in the UK; additionally, one specimen appeared to yield the fingerprint of the moor frog (R. arvalis), now extinct in the UK. As such, collagen fingerprinting is here shown to widen the known palaeobiodiversity of taxa, and highlights the further potential to enhance our understanding of climate change in the past.     

Climate change influences on pollinator,forest, and farm interactions across a climate gradient

Improved cookstoves have been identified in Mexico as a key opportunity to advance sustainable local development priorities in disadvantaged regions while mitigating climate change. This paper reviews the Patsari Cookstove Project initiated in 2003 by an NGO, Interdisciplinary Group on Appropriate Rural Technology (GIRA). The project applied an interdisciplinary and participative user-centered approach to disseminate improved cookstoves in rural Mexico, with a special focus on indigenous and poor rural communities. To date, GIRA and the Patsari Network have disseminated thousands of stoves using a “training to trainers” model. Benefits from the project include tangible improvements in users’ health, as well as savings in time and money expended on fuelwood procurement and use. The project has also documented substantive environmental benefits from significant mitigation of greenhouse gas (GHG) emissions associated with traditional open fires. To sustain scaling up efforts over the long-term, two networks have been created: The Patsari Network, which includes several organizations promoting Patsari stoves for household users, and the Tsiri Network, which supports local food security and the empowerment of indigenous women through the promotion of institutional cookstoves. Through appropriately designed and implemented local interventions, the project demonstrates that the goals of advancing sustainable local development in rural areas and climate change mitigation may not be contradictory, and may in fact reinforce one another.     

Verifying warnings for point precipitation

Short-term risk forecasts of point precipitation are obtained with COTREC/RainCast, a technique for extrapolation of radar images. The risk forecasts are updated every 5 min for the next 0–2 h. Risk levels are defined for moderate, heavy and extreme precipitation. Warning messages are generated if, at the locations of 23 rain gauges, these risk levels are reached or exceeded. The time-resolved gauge data are used to judge if the warning messages are in time, early or late.Data over a period of 4 months (summer 2002) are used for verification. The largest number of warnings (1790) was obtained for moderate precipitation. About 55% of these warnings were in time, 23% were early and 22% were late. This finding is in a good agreement with the defined risk level for warnings (50%), indicating that the model for calculating the risk factors is reliable. Less warnings in time, and more late warnings were found for heavy and extreme precipitation. Hence, the risk levels need to be lowered for heavy and extreme precipitation, in order to reduce the number of late warnings.     

Quaternary alluvial-fan development, climate and morphologic dating of fault scarps in Laguna Salada, Baja California, Mexico

Late Quaternary slip across the Cañada David detachment has produced an extensive array of Quaternary scarps cutting alluvial-fans along nearly the entire length (~ 60 km) of the range-bounding detachment. Eight regional alluvial-fan surfaces (Q₁ [youngest] to Q₈ [oldest]) are defined and mapped along the entire Sierra el Mayor range-front. Terrestrial cosmogenic nuclide ¹⁰Be concentrations from individual boulders on alluvial-fan surfaces Q₄ and Q₇ yield surface exposure ages of 15.5 ± 2.2 ka and 204 ± 11 ka, respectively. Formation of the fans is probably tectonic, but their evolution is strongly moderated by climate, with surfaces developing as the hydrological conditions have changed in response to climate change on Milankovitch timescales. Systematic mapping reveals that the fault scarp array along active range-bounding faults in Sierras Cucapa and El Mayor can be divided into individual rupture zones, based on cross-cutting relationships with alluvial-fans. Quantitative morphological ages of the Laguna Salada fault-scarps, derived from linear diffusive degradation modeling, are consistent with the age of the scarps based on cross-cutting relationships. The weighted means of the maximum mass diffusivity constant for all scarps with offsets < 4 m is 0.051 and 0.066 m²/ka for the infinite and finite-slope solutions of the diffusion equation, respectively. This estimate is approximately an order of magnitude smaller than the lowest diffusivity constants documented in other regions and it probably reflects the extreme aridity and other microclimatic conditions that characterize the eastern margin of Laguna Salada.     

Towards Improved Remedial Outcomes in Categorical Aquifers with an Iterative Ensemble Smoother

Categorical parameter distributions consisting of geologic facies with distinct properties, for example, high-permeability channels embedded in a low-permeability matrix, are common at contaminated sites. At these sites, low-permeability facies store solute mass, acting as secondary sources to higher-permeability facies, sustaining concentrations for decades while increasing risk and cleanup costs. Parameter estimation is difficult in such systems because the discontinuities in the parameter space hinder the inverse problem. This paper presents a novel approach based on Traveling Pilot Points (TRIPS) and an iterative ensemble smoother (IES) to solve the categorical inverse problem. Groundwater flow and solute transport in a hypothetical aquifer with a categorical parameter distribution are simulated using MODFLOW 6. Heads and concentrations are recorded at multiple monitoring locations. IES is used to generate posterior ensembles assuming a TRIPS prior and an approximate multi-Gaussian prior. The ensembles are used to predict solute concentrations and mass into the future. The evaluation also includes an assessment of how the number of measurements and the choice of the geological prior determine the characteristics of the posterior ensemble and the resulting predictions. The results indicate that IES was able to efficiently sample the posterior distribution and showed that even with an approximate geological prior, a high degree of parameterization and history matching could lead to parameter ensembles that can be useful for making certain types of predictions (heads, concentrations). However, the approximate geological prior was insufficient for predicting mass. The analysis demonstrates how decision-makers can quantify uncertainty and make informed decisions with an ensemble-based approach.     

New Approach to Study Extended Evolution of Supergranular Flows and Their Advection of Magnetic Elements

Using velocity and magnetogram data extracted from the full-disk field of view of MDI during the 1999 Dynamics Program, we have studied the dynamics of small-scale magnetic elements (3–7 Mm in size) over time periods as long as six days while they are readily visible on the solar disk. By exploiting concurrent time series of magnetograms and Doppler images, we have compared the motion of magnetic flux elements with the supergranular velocity field inferred from the correlation tracking of mesogranular motions. Using this new method (which combines the results from correlation tracking of mesogranules with detailed analysis of simultaneous magnetograms), it is now possible to correlate the motions of the velocity field and magnetic flux for long periods of time and at high temporal resolution. This technique can be utilized to examine the long-term evolution of supergranulation and associated magnetic fields, for it can be applied to data that span far longer time durations than has been possible previously. As tests of its efficacy, we are able to use this method to verify many results of earlier investigations. We confirm that magnetic elements travel at approximately 350 m s ^–1 throughout the duration of their lifetime as they are transported by supergranular outflows. We also find that the positions of the magnetic flux elements coincide with the supergranular network boundaries and adjust as the supergranular network itself evolves over the six days of this data set. Thus we conclude that this new method permits us to study the extended evolution of the supergranular flow field and its advection of magnetic elements. Since small-scale magnetic elements are strongly advected by turbulent convection, their dynamics can give important insight into the properties of the subsurface convection.     

Establishing constraints on groundwater ages with Cl,C, H,and noble gases: A case study in the eastern Paris basin,France

Groundwaters from the Tithonian/Kimmeridgian, Oxfordian and Upper Dogger aquifers, within the eastern part of the Paris basin (France), were characterised using ³H, ¹⁴C and ³⁶Cl, and noble gases tracers, to evaluate their residence times and determine their recharge period. This information is an important prerequisite to evaluating the confinement properties of the Callovo-Oxfordian clay formation sandwiched between the Oxfordian aquifer and the Dogger aquifer, currently being investigated by the French nuclear waste management agency (Andra) for radioactive waste disposal. Data presented in this paper are used to test 4 hypotheses.     

Sedimentation in Lake Biel,an eutrophic,hard-water lake in northwestern Switzerland

A 2-year study of sedimentation in Lake Biel reveals that three major factors can account for the spatial and temporal patterns of tripton sedimentation. Allochthonous inputs of particulate matter mostly derived from the Aare river during spring snowmelt and other high-water periods, provide about 50% of the carbonate and 50% of the siliceous matter collected in sediment traps. Phytoplankton activity in this eutrophic, hard-water lake accounts for the rest of the carbonate and siliceous matter, the latter being mostly diatom frustules. Sedimentation rates are thus highest during periods of maximum river flooding, maximum phytoplankton activity and following the breakdown of the thermocline, at which time trapped particles settle out. Resuspension of sediment is important in at least one basin. Resolution of carbonate appears to be minor.     

Macroalgal survival in ballast water tanks

Despite a large amount of research into invasive species and their introductions, there have been no studies focused on macroalgal transport in ballast water. To address this, we collected replicate samples of ballast water from 12 ships in two Mediterranean harbours (Naples and Salerno). Filtered samples were kept in culture for a month at Mediterranean mean conditions (18 degrees C, 12:12h LD, 60micromol photons m(-2)s(-1)). Fifteen macroalgal taxa were cultured and differed according to the geographic origin of the ballast water. Most of the cultured algae were widely distributed species (e.g. Ulva spp. and Acinetospora-phase). However, Ulva ohnoi Hiraoka and Shimada, described from Japan, was hitherto unknown in the Mediterranean Sea. We show for the first time that ballast water can be an important vector for the transport of microscopic stages of macroalgae and that this can be a vector for the introduction of alien species.