Numerical simulation of flow around a circular cylinder close to a flat seabed at high Reynolds numbers using a k–ε model

High Reynolds number flows around a circular cylinder close to a flat seabed have been computed using a two-dimensional standard high Reynolds number k–ε turbulence model. The effects of gap to diameter ratio, Reynolds number and flat seabed roughness for a given boundary layer thickness of the inlet flow upstream of the cylinder have been investigated. Hydrodynamic quantities and the resulting bedload transport have been predicted, and the vortex shedding mechanisms have been investigated. Predictions of hydrodynamic quantities around a cylinder located far away from the bed (so that the effect of the bed is negligible) are in satisfactory agreement with published experimental data and numerical results obtained for the flow around an isolated cylinder. Results for lower Reynolds number flows have also been computed for comparison with the high Reynolds number flow results. Overall it appears that the present approach is suitable for design purposes at high Reynolds numbers which are present near the seabed in the real ocean.     

Oxidative damage in rainbow trout caged in a polluted river

Sewage treatment works (STWs) are a common source of chemicals entering into the aquatic environment. In order to assess effects of these effluents on oxidative stress parameters in aquatic organisms, we caged rainbow trout at five sites: upstream, near an STW effluent, and three sites downstream in the river Viskan in western Sweden for 14 days during autumn, 2006. We then measured protein carbonyls in plasma as well as 20S proteosome activity and lipid peroxidation products, i.e. MDA and 4-HNE, in liver samples. Levels of both lipid and protein oxidative damage products were elevated in fish caged near the STW effluent while 20S activity showed no differences. This argues that complex mixtures of chemicals entering into the aquatic environment do have deleterious effects on fish. Additionally, oxidative stress parameters can serve as a biomarker in aquatic organisms.     

Seismic geomorphology and growth architecture of a Miocene barrier reef,Browse Basin,NW-Australia

The Cenozoic succession of Browse Basin is characterized by a carbonate system, that developed from a non-tropical ramp in Eocene-lower Miocene times to a tropical rimmed platform in the middle Miocene. The evolution of the platform was unraveled through the interpretation of the seismic geomorphology and borehole data of the middle Miocene tropical reef system. The first reef structures developed during the early middle Miocene as narrow linear reef belts with an oblique orientation with respect to shelf strike direction. Subsequently, they prograded toward the platform margin to form a barrier reef with a minimum length of 40 km. The barrier reef itself comprises three distinct ridges separated by progradational steps. The second and third step are separated by a karstified horizon, which is interpreted to represent the global sea-level fall shortly before the Serravallian/Tortonian boundary. The following third ridge formed in a slightly downstepped position during the sea-level lowstand and initial transgressive phase. Further sea-level rise during the early Tortonian first drowned the barrier-reef system and subsequently also the patch reefs and relic atolls that had established in a backstepped position in the platform interior. The similar evolution of the Browse Basin reef system and other contemporaneous carbonate systems indicates a strong impact of eustatic sea-level changes. Relatively large subsidence rates in the study area possibly augmented the eustatic sea-level rise in the Tortonian and hence contributed to the drowning of the reef system. However, the initiation and final demise of the reef system was also governed by global and regional climate variations. The first seismically-defined reefs developed simultaneous to a maximum in the transport capacity of the Indonesian throughflow, which brings warm low-salinity waters to the North-West Shelf. Reef drowning followed the restriction of this seaway close to the middle to early Miocene boundary. This near closure of the Indonesian seaway possibly led to a regional amplification of the global middle to late Miocene cooling trend and hampered the potential of the reef system to keep up with the rising sea-level.     

The BEEP project in the Baltic Sea: overview of results and outline for a regional biological effects monitoring strategy

Field studies in the framework of the EU funded BEEP project (Biological Effects of Environmental Pollution in Marine Coastal Ecosystems, 2001-2004) aimed at validating and intercalibrating a battery of biomarkers of contaminant exposure and effects in selected indicator species in the Mediterranean, the North Atlantic and the Baltic Seas. Major strategic goals of the BEEP project were the development of a sensitive and cost-efficient biological effects monitoring approach, delivery of information and advice to end-user groups, and the implementation of a network of biomarker researchers around Europe. Based on the main results obtained in the Baltic Sea component of the BEEP the present paper summarises and assesses the applicability of biomarkers for different regions and species in this sea area. Moreover, a general strategy and some practical considerations for the monitoring of biological effects in the Baltic Sea are outlined.     

On Modelling Discrete Geological Structures as Markov Random Fields

The purpose of this paper is to extend the locally based prediction methodology of BayMar to a global one by modelling discrete spatial structures as Markov random fields. BayMar uses one-dimensional Markov-properties for estimating spatial correlation and Bayesian updating for locally integrating prior and additional information. The methodology of this paper introduces a new estimator of the field parameters based on the maximum likelihood technique for one-dimensional Markov chains. This makes the estimator straightforward to calculate also when there is a large amount of missing observations, which often is the case in geological applications. We make simulations (both unconditional and conditional on the observed data) and maximum a posteriori predictions (restorations) of the non-observed data using Markov chain Monte Carlo methods, in the restoration case by employing simulated annealing. The described method gives satisfactory predictions, while more work is needed in order to simulate, since it appears to have a tendency to overestimate strong spatial dependence. It provides an important development compared to the BayMar-methodology by facilitating global predictions and improved use of sparse data.     

A new look at population change and regional development in Aotearoa New Zealand

In New Zealand, population change is interlinked with regional development. Places growing in population attract regional investment, while regional investment—or lack thereof—can change migration patterns. However, to determine the appropriate response to population change for a community, it is important to understand that population change involves much more than “just” migration. Specifically, it involves interactions between the three components of population change: natural change (births minus deaths), net migration (international and internal) and population ageing (changing cohort size). For example, migration can be negative, but growth can be positive due to underlying natural increase or growth in cohort size. Responses need to differ, depending on these drivers. The goal of this article is to provide new insights into these interactions using data for 275 cities, towns and rural centres (hereafter “urban places”) in New Zealand for the period 1976 to 2013. The results show that natural change has been consistently positive for most urban places up to the present, although projections indicate that in the future this component will become negative across much of the country. At the same time, net migration shows considerable spatial variation, not only in terms of volume, but also direction (negative or positive), which differs markedly by age. A net gain of people of retirement age can offset a net loss of young adults to deliver overall growth, and vice‐versa, but the two have very different implications for longer term growth. An analysis of the drivers of net migration using GIS and machine learning techniques provides an indication of the importance of economic conditions (land‐use and access to markets), lifestyle, access to essential services (hospitals and education) and their interaction with age in regional change. The results show that population age is the best predictor of migration. Younger people are moving to cities for tertiary education and work and older people near or in retirement are moving to smaller lifestyle towns but also want to be close to amenities such as hospitals and international airports. The research also shows that natural lifestyle characteristics (landscape and climate), in combination with age are just as important as economic conditions for understanding migration. Regional development, such as infrastructure that helps business (ports and services) is important for the working age population but not necessarily the retirement age group. When regional development, age/life‐cycle stage and lifestyle come together, such as in Queenstown and Tauranga, net migration gain is high.     

Suspended Matter,Chl-a,CDOM, Grain Sizes,and Optical Properties in the Arctic Fjord-Type Estuary,Kangerlussuaq, West Greenland During Summer

Optical constituents as suspended particulate matter (SPM), chlorophyll (Chl-a), colored dissolved organic matter (CDOM), and grain sizes were obtained on a transect in the arctic fjord-type estuary Kangerlussuaq (66°) in August 2007 along with optical properties. These comprised diffuse attenuation coefficient of downwelling PAR (K _d(PAR)), upwelling PAR (K _u(PAR)), particle beam attenuation coefficient (c _p), and irradiance reflectance R(−0, PAR). PAR is white light between 400 and 700 nm. The estuary receives melt water from the Greenland Inland Ice and stations covered a transect from the very high turbid melt water outlet to clear marine waters. Results showed a strong spatial variation with high values as for suspended matter concentrations, CDOM, diffuse attenuation coefficient K _d(PAR), particle beam attenuation coefficients (c _p), and reflectance R(−0, PAR) at the melt water outlet. Values of optical constituents and properties decreased with distance from the melt water outlet to a more or less constant level in central and outer part of the estuary. There was a strong correlation between inorganic suspended matter (SPMI) and diffuse attenuation coefficient K _d(PAR) (r ² = 0.92) and also for particle beam attenuation coefficient (c _p; r ² = 0.93). The obtained SPMI specific attenuation—K _d^*(PAR) = 0.13 m² g⁻¹ SPMI—and the SPMI specific particle beam attenuation—c _p^* = 0.72 m² g⁻¹—coefficients were about two times higher than average literature values. Irradiance reflectance R(−0, PAR) was comparatively high (0.09−0.20) and showed a high (r ² = 0.80) correlation with K _u(PAR). Scattering dominated relative to absorption—b(PAR)/a(PAR) = 12.3. Results strongly indicated that the high values in the optical properties were related to the very fine particle sizes (mean = 2–6 μm) of the suspended sediment. Data and results are discussed and compared to similar studies from both temperate and tropical estuaries.     

TESSIN VISLab—laboratory for scientific visualization

Scientific visualization is an integral part of the modeling workflow, enabling researchers to understand complex or large data sets and simulation results. A high-resolution stereoscopic virtual reality (VR) environment further enhances the possibilities of visualization. Such an environment also allows collaboration in work groups including people of different backgrounds and to present results of research projects to stakeholders or the public. The requirements for the computing equipment driving the VR environment demand specialized software applications which can be run in a parallel fashion on a set of interconnected machines. Another challenge is to devise a useful data workflow from source data sets onto the display system. Therefore, we develop software applications like the OpenGeoSys Data Explorer, custom data conversion tools for established visualization packages such as ParaView and Visualization Toolkit as well as presentation and interaction techniques for 3D applications like Unity. We demonstrate our workflow by presenting visualization results for case studies from a broad range of applications. An outlook on how visualization techniques can be deeply integrated into the simulation process is given and future technical improvements such as a simplified hardware setup are outlined.     

New interglacial deposits from Copenhagen,Denmark: marine Isotope Stage 7

During a pre‐site survey and construction of a new metro route and station in Copenhagen, fossiliferous organic‐rich sediments were encountered. This paper reports on multidisciplinary investigations of these organic sediments, which occurred beneath a sediment succession with a lower till, glacifluvial sand and gravel, an upper till and glacifluvial sand. The organic sediments were underlain by glacifluvial sand and gravel. The organic‐rich sediments, which were up to 0.5 m thick, accumulated in a low‐energy environment, possibly an oxbow lake. They were rich in plant fossils, which included warmth‐demanding trees and other species, such as Najas minor, indicating slightly higher summer temperatures than at present. Freshwater shells were also frequent. Bithynia opercula allowed the sediments to be put into an aminostratigraphical framework. The amino acid racemization (AAR) ratios indicate that the organic sediments formed during Marine Isotope Stage 7 (MIS 7), which is consistent with optically stimulated luminescence dating that gave ages of 206 and 248 ka from the underlying minerogenic deposit. The assemblages from Trianglen are similar to interglacial deposits from the former Free Port (1.4 km away) in Copenhagen, except that Corbicula and Pisidium clessini were not found at Trianglen. The presence of these bivalves at the Free Port and the ostracod Scottia tumida at Trianglen indicates a pre‐Eemian age. AAR data from archived Bithynia opercula from the Free Port were almost identical to those from Trianglen, indicating that the two sites are contemporary. We suggest the Trianglen interglacial be used as a local name for the MIS 7 interglacial deposits in Copenhagen. MIS 7 deposits have rarely been documented from the region, but MIS 7 deposits may have been mistaken for other ages. The use of AAR ratios in Bithynia opercula has a great potential for correlation of interglacial non‐marine deposits in mainland northern Europe.