Molecular expression of opsin gene in growing juvenile mackerel (<Emphasis Type="Italic">Scomber japonicus</Emphasis> Houttuyn)

Fish have developed color vision that is closely adapted to their photic environments, where both spectral sensitivity and the number of visual opsins are influenced. The mackerel used in this study is one of the most important fishery stocks in Korea. The opsin gene of the mackerel juveniles after 20 days in hatching was isolated and characterized based on the molecular study of visual photoreceptor. The full-length mackerel opsin gene was obtained by PCR amplification of genomic DNA, as well as cDNA synthesis. Sequence analysis of the opsin gene showed that it contained a 1,080 bp open reading frame encoding 360 amino acids. Based on Schiff’s base formation (S114, K119), glycosylation (E3, F37) and palmitoylation (S281, 282), the deduced amino acid sequence had a typical rod opsin. The mackerel and Gempylus serpens showed 73.7% DNA homology on opsin gene, which was higher than any other of investigated species. In the analysis of phylogenetic relationship, the genetic placement of the mackerel is closer to that of Scombroidei than Labroidei, with supporting somewhat strong bootstrap value. In the analysis of Northern and RT-PCR, the probed products were observed only in rapidly growing juveniles. These findings indicate that in mackerel opsin mRNA expression can be detected in day-20 hatching larvae. It may play an important role in stimulating growth hormone.     

Application of probabilistic neural network to design breakwater armor blocks

This study presents a probabilistic neural network (PNN) technique for predicting the stability number of armor blocks of breakwaters. The PNN is prepared using the experimental data of Van der Meer. The predicted stability numbers of the PNN are compared with those of previous studies, i.e. by an empirical formula and a previous neural network model. The agreement index between the measured and predicted stability numbers by PNN are better than those by the previous studies. The PNN offers a way to interpret the network's structure in the form of a probability density function and it is easy to implement. Therefore, it can be an effective tool for designers of rubble mound breakwaters.     

Coastal environmental assessment and management by ecological simulation in Yeoja Bay, Korea

An eco-hydrodynamic model was used to estimate the carrying capacity of pollutant loads and response of water quality to environmental change in Yeoja Bay, Korea. An energy-system model also was used to simulate the fluctuation in nutrients and organic matter in the bordering wetland. Most water quality factors showed a pulsed pattern, and the concentrations of nutrients and organic matter of seawater increased when input loads of nutrients increased due to freshwater discharge. The well-developed tidal zones and wetlands in the northern area of the bay were highly sensitive to input loads. Residence times of water, chemical oxygen demand (COD), and dissolved inorganic nitrogen (DIN) within the bay were estimated to be about 16 days, 43.2 days, and 50.2 days, respectively. Water quality reacted more sensitively to the effects of nitrogen and phosphorus input than to COD. A plan to reduce the present levels of COD and dissolved inorganic phosphorus (DIP) by 20–30% and DIN by at least 50% in pollutant loads is needed for satisfying the target water quality criteria. The natural removal rate of nutrients in wetlands by reeds was assessed to be approximately 10%.     

Radium tracing of submarine groundwater discharge (SGD) and associated nutrient fluxes in a highly-permeable bed coastal zone, Korea

In order to estimate submarine groundwater discharge (SGD) and SGD-driven nutrient fluxes, we measured the concentrations of nutrients, ²²⁴Ra, and ²²⁶Ra in seawater, river water, and coastal groundwater of Yeongil Bay (in the southeastern coast of Korea) in August 2004 and February 2005. The bottom sediments over the shallow areas of this bay are composed mainly of coarse sands. Large excess concentrations of ²²⁴Ra, ²²⁶Ra, and Si supplied from SGD were observed in August 2004, while these excess concentrations were not apparent in February 2005. Based on the mass balance for ²²⁴Ra, ²²⁶Ra, and Si, which showed conservative mixing behavior in seawater, SGD was estimated to be approximately 6 × 10⁶ m³ day^− 1 (seepage rate = 0.2 m day^− 1) in shallow areas (< 9 m water depth) in August 2004, which is much higher than the SGD level typically found in other coastal regions worldwide. During the summer period, SGD-driven nutrients in this bay contributed approximately 98%, 12%, and 76% of the total inputs for dissolved inorganic nitrogen (DIN), phosphorus (DIP), and silicate (DSi), respectively. Our study implies that the ecosystem in this highly permeable bed coastal zone is influenced strongly by SGD during summer, while such influences are negligible in winter.     

Compliance costs and the small fisher: A study of exiters from the New Zealand fishery

Over 3000 predominantly small-scale fishers have exited the New Zealand's quota management system (QMS) between its inception in 1986 and 2000. This study, based on the Ministry of Fisheries database and a questionnaire sent to the exiters, establishes that compliance costs in general, and those specifically related to the QMS, were one of the most consistent reasons for exit. Uncertainty about future QMS policy and the high cost of quota were also significant factors. It appears that the small fishers’ perception of high compliance cost can be supported by industry data.     

Review of recent findings on the water masses and circulation in the East Sea (Sea of Japan)

Recent findings on water masses, biogeochemical tracers, deep currents and basin-scale circulation in the East/Japan Sea, and numerical modeling of its circulation are reviewed. Warming continues up to 2007 despite an episode of bottom water formation in the winter of 2000–2001. Water masses have definitely changed since the 1970s and further changes are expected due to the continuation of warming. Accumulation of current data in deep waters of the East/Japan Sea reveals that the circulation in the East/Japan Sea is primarily cyclonic with sub-basin scale cyclonic and anticyclonic cells in the Ulleung Basin (Tsushima Basin). Our understanding of the circulation of intermediate water masses has been deepened through high-resolution numerical studies, and the implementation of data assimilation has had initial success. However, the East/Japan Sea is unique in terms of the fine vertical structures of physical and biogeochemical properties of cold water mass measured at the highest precision and their rapid change with the global warming, so that full understanding of the structures and their change requires in-depth process studies with continuous monitoring programs.     

Small-scale marine fisheries policy in Vietnam

Vietnam's marine fisheries are considered to be small scale and are concentrated in coastal near-shore waters. This has resulted in heavy pressure on near-shore fisheries resources. Near-shore fisheries are considered by fishers and the government to be over-exploited, causing hardship for many coastal communities. This paper reviews and analyzes changes in policy towards small-scale fisheries in Vietnam over the last two decades. The primary issues facing the small-scale fisheries in Vietnam are to restructure the near-shore fisheries and to address over-capacity. Recommended actions include improved fisheries statistics, resources for provincial fisheries staff, and a coordinated and integrated approach involving a mixed strategy of resource management; resource restoration; economic and community development; and new governance arrangements.     

Effect of wave amplitude on turbulent flow in a wavy channel by direct numerical simulation

The present study numerically investigates the characteristics of three-dimensional turbulent flow in a wavy channel. For the purpose of a careful observation of the effect of the wave amplitude on the turbulent flow, numerical simulations are performed at a various range of the wave amplitude to wavelength ratio (0.01?α/λ?0.05), where the wavelength is fixed with the same value of the mean channel height (H). The immersed boundary method is used to handle the wavy surface in a rectangular grid system, using the finite volume method. The Reynolds number (Re=U_bH/ν) based on the bulk velocity (U_b) is fixed at 6760. The present computational results for a wavy surface are well compared with those of references. When α/λ=0.02, the small recirculating flow occurs near the trough at the instant, but the mean reverse flow is not observed. In the mean flow field, the reverse flow appears from α/λ=0.03 among the wave amplitude considered in this study. The domain of the mean reverse flow defined by the locations of separation and reattachment depends strongly on the wave amplitude. The pressure drag coefficient augments with increasing the wave amplitude. The friction drag coefficient shows the increase and decrease behavior according to the wave amplitude. The quantitative information about the flow variables such as the distribution of pressure and shear stress on the wavy surface is highlighted.     

Bathymetry enhancement by altimetry-derived gravity anomalies in the East Sea (Sea of Japan)

The gravity-geologic method (GGM) was used to enhance the bathymetry of the East Sea (Sea of Japan) with satellite altimetry-derived free-air gravity anomalies and shipborne depth measurements. By comparison with the bathymetry model of Smith and Sandwell’s (SAS) approach (1994), GGM was found to have an advantage with short wavelength (≤12 km) components, while SAS better predicts longer wavelength (≥25 km) components, despite its dependency on density contrast. To mitigate this limitation, a tuning density contrast of 10.25 g/cm³ between seawater and the seafloor was primarily estimated by the downward continuation method and then validated by the check points method with GGM. Similarly, SAS is limited by the “A” value in low-pass part of the Wiener filter, which defines the effective range of the wavelength components on bathymetry. As a final result, we present an enhanced GGM bathymetry model by integrating all available data.     

Distribution and expression of gas seeps in a gas hydrate province of the northeastern Sakhalin continental slope, Sea of Okhotsk

Multidisciplinary surveys were conducted to investigate gas seepage and gas hydrate accumulation on the northeastern Sakhalin continental slope (NESS), Sea of Okhotsk, during joint Korean–Russian–Japanese expeditions conducted from 2003 to 2007 (CHAOS and SSGH projects). One hundred sixty-one gas seeps were detected in a 2000 km² area of the NESS (between 53°45′N and 54°45′N). Active gas seeps in a gas hydrate province on the NESS were evident from features in the water column, on the seafloor, and in the subsurface: well-defined hydroacoustic anomalies (gas flares), side-scan sonar structures with high backscatter intensity (seepage structures), bathymetric structures (pockmarks and mounds), gas- and gas-hydrate-related seismic features (bottom-simulating reflectors, gas chimneys, high-amplitude reflectors, and acoustic blanking), high methane concentrations in seawater, and gas hydrates in sediment near the seafloor. These expressions were generally spatially related; a gas flare would be associated with a seepage structure (mound), below which a gas chimney was present. The spatial distribution of gas seeps on the NESS is controlled by four types of geological structures: faults, the shelf break, seafloor canyons, and submarine slides. Gas chimneys that produced enhanced reflection on high-resolution seismic profiles are interpreted as active pathways for upward gas migration to the seafloor. The chimneys and gas flares are good indicators of active seepage.