Nomenclature for hydrocarbon-inducible cytochrome P450 in fish

A growing number of studies concerning organic chemical pollutant induction of cytochrome P450 mixed function oxidases in fish stimulate a need for common terminology. Similar names for proteins might be based on similarities in function, in regulation, and in their structure. Under the current guidelines for P450 proteins, classification is based on measured or inferred amino acid sequence. At present, a single teleost hydrocarbon-inducible P450 (rainbow trout) can conclusively be termed 1A1: a second (scup P450E) can be so termed on the basis of partial sequence. The lack of primary sequence information makes it difficult to assign a specific identity to hydrocarbon inducible P450s in other fish. Nevertheless, the sum of information on catalytic activities, introduction and immunological cross-reactivities provides a weight of evidence sufficient to assume (but not prove) gene family (I) and subfamily (A) identities for hydrocarbon-inducible proteins in many species. Reference to these proteins as P4501 or IA (or CYPI or IA) in fish species where sequence data are lacking is suggested as more appropriate than reference to them as P450IAI (or CYPIAI). Additional primary sequence data are required to further define orthologous relationships among P450IA genes in fish, and to determine whether IAI is a correct designation for a hydrocarbon-inducible P450 in many species.     

Foraminifera from the continental slope off Cape Hatteras, North Carolina

The recent benthic meiofaunal foraminiferal assemblage from the continental slope (590-2 003 m) off Cape Hatteras, North Carolina exhibits high species richness and evenness, moderate diversity values, and lacks numerically dominant species. The preserved planktic assemblage has relatively low species richness, high evenness, low diversity, and a few numerically dominant species. Approximately 9% of the benthic species are those that typically live within continental shelf depth ranges. The benthic assemblage abundances and diversities do not follow depth patterns or geophysical characteristics. No biogeographic boundary can be described within the study area for meiofaunal foraminifera. Oxygen limitation does not appear to be a factor affecting the benthos of the North Carolina continental slope based upon the community structure of the benthic foraminifera, if total assemblage is assumed to reflect the recently living community. The high carbonate content of sediments in the area may be explained by foraminiferal tests. Within the study area, the foraminiferal assemblages are uniform, and probably reflect relative consistency of primary environmental variables as well as dynamic downslope transport and high influx of material from the water column in the vicinity where the Gulf Stream and the Western Boundary Undercurrent cross.     

Northward transport of pacific summer water along the Northwind Ridge in the Western Arctic Ocean

The recent sea-ice reduction in the Arctic Ocean is not spatially uniform, but is disproportionally large around the Northwind Ridge and Chukchi Plateau compared to elsewhere in the Canada Basin. In the Northwind Ridge region, Pacific Summer Water (PSW) delivered from the Bering Sea occupies the subsurface layer. The spatial distribution of warm PSW shows a quite similar pattern to the recent ice retreat, suggesting the influence of PSW on the sea-ice reduction. To understand the regionality of the recent ice retreat, we examine the dynamics and timing of the delivery of the PSW into this region. Here, we adopt a two-layer linearized potential vorticity equation to investigate the behavior of Rossby waves in the presence of a topographic discontinuity in the high latitude ocean. The analytical results show a quite different structure from those of mid-latitude basins due to the small value of β. Incident barotropic waves excited by the sea-ice motion with large annual variation can be scattered into both barotropic and baroclinic modes at the discontinuity. Since the scattered baroclinic Rossby wave with annual frequency cannot propagate freely, a strong baroclinic current near the topographic discontinuity is established. The seasonal variation of current near the topographic discontinuity would cause a kind of selective switching system for shelf water transport into the basin. In our simple analytical model, the enhanced northward transport of summer water and reduced northward transport of winter water are well demonstrated. The present study indicates that these basic dynamics imply that a strengthening of the surface forcing during winter in the Canada Basin could cause sea-ice reduction in the Western Arctic through the changes of underlying Pacific Summer Water.     

Effects of variable winds on biological productivity on continental shelves in coastal upwelling systems

The production and distribution of biological material in wind-driven coastal upwelling systems are of global importance, yet they remain poorly understood. Production is frequently presumed to be proportional to upwelling rate, yet high winds can lead to advective losses from continental shelves, where many species at higher trophic levels reside. An idealized mixed-layer conveyor (MLC) model of biological production from constant upwelling winds demonstrated previously that the amount of new production available to shelf species increased with upwelling at low winds, but declined at high winds [Botsford, L.W., Lawrence, C.A., Dever, E.P., Hastings, A., Largier, J., 2003. Wind strength and biological productivity in upwelling systems: an idealized study. Fisheries Oceanography 12, 245–259]. Here we analyze the response of this model to time-varying winds for parameter values and observed winds from the Wind Events and Shelf Transport (WEST) study region. We compare this response to the conventional view that the results of upwelling are proportional to upwelled volume. Most new production per volume upwelled available to shelf species occurs following rapid increases in shelf transit time due to decreases in wind (i.e. relaxations). However, on synoptic, event time-scales shelf production is positively correlated with upwelling rate. This is primarily due to the effect of synchronous periods of low values in these time series, paradoxically due to wind relaxations. On inter-annual time-scales, computing model production from wind forcing from 20 previous years shows that these synchronous periods of low values have little effect on correlations between upwelling and production. Comparison of model production from 20 years of wind data over a range of shelf widths shows that upwelling rate will predict biological production well only in locations where cross-shelf transit times are greater than the time required for phytoplankton or zooplankton production. For stronger mean winds (narrower shelves), annual production falls below the peak of constant wind prediction [Botsford et al., 2003. Wind strength and biological productivity in upwelling systems: an idealized study. Fisheries Oceanography 12, 245–259], then as winds increase further (shelves become narrower) production does not decline as steeply as the constant wind prediction.     

Change of multifractal thermal characteristics in the western Philippine sea upper layer during internal wave-soliton propagation

The upper layer (above 140 m depth) temperature in the western Philippine Sea near Taiwan was sampled using a coastal monitoring buoy (CMB) with 15 attached thermistors during July 28–August 7, 2005. The data were collected every 10 min at 1, 3, 5, 10, 15, and 20 m using the CMB sensors, and every 15 sec at 15 different depths between 25 m and 140 m. Internal waves and solitons were identified from the time-depth plot of the temperature field. Without the internal waves and solitons, the power spectra, structure functions, and singular measures (representing the intermittency) of temperature field satisfy the power law with multi-scale characteristics at all depths. The internal waves do not change the basic characteristics of the multifractal structure. However, the internal solitons change the power exponent of the power spectra drastically, especially in the low wave number domain; they also break down the power law of the structure function and increase the intermittency parameter. The physical mechanisms causing these different effects need to be explored further.     

Kuroshio extension variability explored through assimilation of TOPEX/POSEIDON altimeter data into a quasi-geostrophic model

Mesoscale features in the eastward extension of the Kuroshio were investigated using assimilation of TOPEX/POSEIDON (T/P) data into a three-layer quasi-geostrophic model. The T/P data exhibited an elongated state of the southern recirculation gyre in 1993–95 and 1997, between whose two periods the gyre had a contracted state in 1995–96. A few stationary eddies were located in the southern gyre during the contracted state. The baroclinic instability, which was indicated by the phase shift from the uppermost-to the lowest-layer anomalies toward the downstream side, was evident near the Kuroshio Extension (KE) path. Since the instability never appeared in the artificial model without bottom topography, the topographic barrier for the eastward flow in the lowest layer was a necessary condition for the instability. The instability synchronized with the transition in the western region of the KE axis from the elongated to the contracted states. This evolution was interpreted as if the baroclinic instability played some part in the KE states and was a trigger for the transition from the elongated to the contracted states.     

Physiological and behavioral responses of Bathynerita naticoidea (Gastropoda: Neritidae) and Methanoaricia dendrobranchiata (Polychaeta: Orbiniidae) to hypersaline conditions at a brine pool cold seep

Bathynerita naticoidea (Gastropoda: Neritidae) and Methanoaricia dendrobranchiata (Polychaeta: Orbiniidae) are two of the most abundant invertebrates associated with cold‐seep mussel beds in the Gulf of Mexico. At the methane seep known as Brine Pool NR‐1 (27 °43.415 N, 91 °16.756 W; 650 m depth), which is surrounded by a broad band of mussels (Bathymodiolus childressi), these species have distinctly different patterns of abundance, with the gastropod being found mostly at the outer edge of the mussel bed (average density in November 2003: 817 individuals·m⁻² in outer zone, 20·m⁻² in inner zone) and the polychaete being found almost exclusively near the inner edge (average density in November 2003: 3155 individuals·m⁻² in inner zone, 0·m⁻² in outer zone), adjacent to the brine pool itself. The salinity of the brine pool exceeds 120, so we hypothesized that M. dendrobranchiata should be more tolerant of high salinities than B. naticoidea. The opposite proved to be true. The gastropods were capable of withstanding salinities at least as high as 85, whereas the polychaetes died at salinities higher than 75. Both species were osmoconformers over the range of salinities (35–75) tested. Behavioral responses of B. naticoidea to salinities of 50, 60, and 70 were investigated in inverted vertical haloclines. Gastropods generally did not enter water of salinity greater than 60, but tolerated short periods at 60. Behavioral avoidance of brine should limit the vertical distribution of B. naticoidea in the inner zone to the top 2.5–5 cm of the mussel bed. Behavior is also a likely (though unproven) mechanism for controlling horizontal distribution of this species across the mussel bed. Methanoaricia dendrobranchiata can tolerate short excursions into the brine, but probably avoids hypersaline conditions by aggregating on the tops of the mussels.