Polarization models of young stellar objects – II. Linear and circular polarimetry of R Coronae Australis

Near-infrared linear imaging polarimetry of the young stellar objects R CrA and T CrA in the J , H and K n bands, and circular imaging polarimetry in the H band, is presented. The data are modelled with the Clark and McCall scattering model. The R CrA and T CrA system is shown to be a particularly complex scattering environment. In the case of R CrA there is evidence that the wavelength dependence of polarization changes across the nebula. MRN dust grain models do not explain this behaviour. Depolarization by line emission is considered as an alternative explanation. The dust grain properties could also be changing across the nebula.
Although surrounded by reflection nebulosity, there is a region of particularly low polarization surrounding R CrA that is best modelled by the canonical bipolar outflow being truncated by an evacuated spherical cavity surrounding the star. The symmetry axis of the nebula appears inclined by 50° to the plane of the sky.
The H -band circular polarimetry of R CrA clearly shows a quadrupolar structure of positive and negative degrees of circular polarization that reach peak magnitudes of ∼5 per cent within our limited map. It is shown that spherical MRN grains are incapable of producing this circular polarization given the observed linear polarization of the R CrA system. Instead, scattering from aligned non-spherical grains is proposed as the operating mechanism.
T CrA is a more archetypical bipolar reflection nebula, and this object is modelled as a canonical parabolic reflection nebula that lies in the plane of the sky. The wavelength independence of linear polarization in the T CrA reflection nebula suggests that the scattering particles are Rayleigh sized. This is modelled with the MRN interstellar grain size distribution.     

Shelf spawning habitat of Emmelichthys nitidus in south-eastern Australia – Implications and suitability for egg-based biomass estimation

The spawning habitat of Emmelichthys nitidus (Emmelichthyidae) in south-eastern Australia is described from vertical ichthyoplankton samples collected along the shelf region off eastern through to south-western Tasmania during peak spawning in October 2005–06. Surveys covered eastern waters in 2005 (38.8–43.5°S), and both eastern and southern waters in 2006 (40.5°S around to 43.5°S off the south-west). Eggs (n = 10,393) and larvae (n = 378) occurred along eastern Tasmania in both years but were rare along southern waters south and westwards of 43.5°S in 2006. Peak egg abundances (1950–2640 per m⁻²) were obtained off north-eastern Tasmania (40.5–41.5°S) between the shelf break and 2.5 nm inshore from the break. Eggs were up to 5-days old, while nearly 95% of larvae were at the early preflexion stage, i.e. close to newly emerged. Average abundances of aged eggs pooled across each survey declined steadily from day-1 to day-5 eggs both in 2005 (97-18) and 2006 (175-34). Moreover, day-1 egg abundances were significantly greater 2.5 nm at either side of the break, including at the break, than in waters ≥5 nm both inshore and offshore from the break. These results, complemented with egg and larval data obtained in shelf waters off New South Wales (NSW; 35.0–37.7°S) in October 2002–03, indicate that the main spawning area of E. nitidus in south-eastern Australia lies between 35.5°S off southern NSW and 43.5°S off south-eastern Tasmania, and that spawning activity declines abruptly south and westwards of 43.5°S around to the south-west coast. In addition, quotient analyses of day-1 egg abundances point to a preferred spawning habitat contained predominantly within a 5 nm corridor along the shelf break, where waters are 125–325 m deep and median temperatures 13.5–14.0 °C. Spawning off eastern Tasmania is timed with the productivity outburst typical of the region during the austral spring, and the temperature increase from the mixing between the southwards advancing, warm East Australian Current and cooler subantarctic water over the shelf. Overall, ichthyoplankton data, coupled with reproductive information from adults trawled off Tasmania, indicate that E. nitidus constitutes a suitable species for the application of the daily egg production method (DEPM) to estimate spawning biomass. This finding, together with evidence in support of a discrete eastern spawning stock extending from southern NSW to southern Tasmania, strengthens the need for DEPM-based biomass estimates of E. nitidus prior to further fishery expansion.     

High-sediment tolerance in the reef coral Turbinaria mesenterina from the inner Great Barrier Reef lagoon (Australia)

Sedimentation is an important stressor on coral reefs subjected to run-off, dredging and resuspension events. Reefs with a history of high-sediment loads tend to be dominated by a few tolerant coral species. A key question is whether such species live close to their tolerance thresholds or near their niche optima. Here, we analyse experimentally the sediment tolerance of a spatially dominant coral, Turbinaria mesenterina (Dendrophylliidae), at nearshore reefs in the central Great Barrier Reef lagoon. Testing was conducted in a 5-week tank experiment under manipulated sediment loading and flow conditions. Physiological stress was assessed based on the behaviour of three key response variables: skeletal growth rate, energy reserves (lipid content) and photosynthetic performance. Because sediment effects are likely to vary between flow regimes, sediment and flow responses were tested using a full factorial design. Sediment loads greater than 110 mg cm⁻² had no effect on any of the physiological variables, regardless of flow (0.7–24 cm s⁻¹). Turbinaria mesenterina is thus tolerant to sediment loads an order of magnitude higher than most severe sediment conditions in situ. Likely mechanisms for such tolerance are that: (1) colonies covered in sediment (60–120 μm) in low-flow were able to clear themselves rapidly (within 4–5 h); and (2) sediment provides a source of food. These results suggest that intensified sediment regimes on coastal reefs may shift coral communities towards dominance by a few well-adapted species.     

Past and future evolution in the Thames Estuary

In order to manage estuaries effectively, it is important to be able to predict how they are likely to change in the future, both to natural and anthropogenic forcing. This paper looks at historical morphological development of the Thames Estuary, taking into account the effect of human intervention, and uses the ASMITA morphological model to predict the long-term evolution of the estuary into the future, assuming either historic rates of sea-level rise or accelerated sea-level rise. The historical sediment budget for the Thames Estuary was examined and source and sink terms, including fluvial sediment supply and historical dredging rates, were included in the ASMITA model. ASMITA predictions showed good overall agreement with the historical data, highlighting the benefits of detailed historical review and the inclusion of anthropogenic effects in the model. Future ASMITA predictions for the period 2000 to 2100 suggest that, under both historical and accelerated sea-level rise scenarios, the estuary will experience accretion, but, for the accelerated sea-level rise scenario, accretion will be at a slower rate than sea level rise. With accelerated sea-level rise, intertidal profiles were predicted to be up to 0.5 m lower with respect to high water.     

Sediment colour reflectance spectroscopy as a proxy for wet/dry cycles at Lake El'gygytgyn,Far East Russia,during Marine Isotope Stages 8 to 12

Marine Isotope Stage 11 has been proposed as an analogue for the present interglacial interval; yet, terrestrial climate records from both this region and time interval are rare. The sediments deposited at Lake El'gygytgyn (67°30′N, 172°5′E) in Far East Russia contain a 3·56 Ma record of climate variability. This study presents a high‐resolution record of sediment colour change from Marine Isotope Stage 8 to 12 (ca 275 to 475 ka) and demonstrates the link between lake catchment processes and climate variability. The hue colour parameter, calculated from data collected via colour reflectance spectroscopy in the visible spectrum (380 to 720 nm), exhibits correspondence with global climate records. Determining the source of sediment colour changes was achieved through detailed mineralogical and sedimentological methods, and linked to colour changes through a series of colour sensitivity tests. Mineralogical data, measured by X‐ray diffraction, reveal fluctuations in concentrations of clay minerals corresponding to colour changes. Further analyses of the clay mineral assemblages show no change in relative clay mineral abundances, yet demonstrate a lake catchment dominated by physical weathering processes. Using measured mineral abundances, reconstructions of sediment colour based on colour reflectance mineral standards link mineral and clay mineral content to overall sediment colour. Colour sensitivity tests demonstrate the ability of iron oxide minerals to stain sediments red. Additionally, colour sensitivity to organic matter content was tested, suggesting that organic content drives variability in the red portion of the spectrum and darkens the overall colour signal. Sediment colour is then ultimately linked to physical weathering of bedrock minerals, with small amounts of chemical weathering producing iron oxides during wet intervals. Fluctuations in the sediment colour reveal a high‐resolution record of wet/dry cycles, and provide new information about wet periods for the Russian Arctic region not yet understood from other lake proxy records.     

The structure of hematite (α-Fe2O3) (001) surfaces in aqueous media: scanning tunneling microscopy and resonant tunneling calculations of coexisting O and Fe terminations

The iron oxide-water interface is of interest not only in geochemical and environmental processes, but also in fields ranging from corrosion to photocatalysis. The structure of α-Fe₂O₃ (001) surfaces is not fully understood, and questions have arisen recently concerning different terminations of (001) terraces; a so-called Fe-termination is expected, but under some conditions an O-termination may also be possible. Ultra-high vacuum (UHV) scanning tunneling microscope (STM) studies report evidence for an O-termination in coexistence with an Fe-termination, but other studies find no evidence for an O-termination. Molecular mechanics studies suggest that an O-termination should be possible in an aqueous environment. An O-termination could result from dissolution; if Fe atoms were to dissolve from an Fe-termination, an O-termination would presumably result (and vice-versa). We imaged hematite (001) surfaces in air and aqueous solution using STM. To aid interpretation of the images, we use a resonant tunneling model (RTM) parameterized using ab initio calculations.Our STM and RTM results are consistent with mixed O- and Fe-terminated (001) surfaces. For acid-etched surfaces we find evidence for a periodic (with wavelength of 2.2 ± 0.2 nm) arrangement of nominal O- and Fe-terminated domains. Two different borders between domains should occur, one in which the Fe-termination is high relative to the O-termination, and the reverse. The different domain borders have significantly different heights, consistent with RTM calculations. This agreement allows us to conclude that the Fe-termination is topographically high on most terraces. Surface domains are observed in aqueous solutions at the atomic scale, and appear to be very unreactive on tens-of-seconds time scales at pH 1.     

Climate variability and maize production in Cameroon: Simulating the effects of extreme dry and wet years

The effects of interyear variability of extreme rainfall events on maize yields at locations in Cameroon, in central‐west sub‐Saharan Africa were investigated through a simulation assessment combining a weather generator with a crop growth model. This study analyzes the potential of using dry/wet year predictions to reduce risk in subsistence agricultural production associated with climate variability at the site level. Weather data sets from eight provincial study localities were classified into three precipitation scenarios – dry (lower threshold), normal and wet (upper threshold) years. According to the modelling results, there is a less than 12 per cent variance in mean maize yields across six out of the eight localities when planting occurs in March, May and August. The variance is equivalent to approximately 100–300 kg per ha, which represents a significant amount of food in the household security of the majority impoverished sectors of rural and urban society, and which could greatly impact the socioeconomic activities of the entire populace. The results lead to the conclusion that all extreme dry and wet years are not equal in terms of their regional manifestation. This calls for precise monthly and sub‐seasonal local level forecasts and the effective dissemination of this information to farming communities in Cameroon, thereby facilitating the adaptive management of indigenous cropping practices and reducing their vulnerability to climate related disasters.     

The metabolism of aquatic ecosystems: history,applications, and future challenges

Measurements of the production and consumption of organic material have been a focus of aquatic science for more than 80 years. Over the last century, a variety of approaches have been developed and employed for measuring rates of gross primary production (P_g), respiration (R), and net ecosystem production (P_n = P_g − R) within aquatic ecosystems. Here, we reconsider the range of approaches and applications for ecosystem metabolism measurements, and suggest ways by which such studies can continue to contribute to aquatic ecology. This paper reviews past and contemporary studies of aquatic ecosystem-level metabolism to identify their role in understanding and managing aquatic systems. We identify four broad research objectives that have motivated ecosystem metabolism studies: (1) quantifying magnitude and variability of metabolic rates for cross-system comparison, (2) estimating organic matter transfer between adjacent systems or subsystems, (3) measuring ecosystem-scale responses to perturbation, both natural and anthropogenic, and (4) quantifying and calibrating models of biogeochemical processes and trophic networks. The magnitudes of whole-system gross primary production, respiration and net ecosystem production rates vary among aquatic environments and are partly constrained by the chosen methodology. We argue that measurements of ecosystem metabolism should be a vital component of routine monitoring at larger scales in the aquatic environment using existing flexible, precise, and durable sensor technologies. Current and future aquatic ecosystem studies will benefit from application of new methods for metabolism measurements, which facilitate integration of process measurements and calibration of models for addressing fundamental questions involving ecosystem-scale processes.     

The geomorphic legacy of water and erosion control structures in a semiarid rangeland watershed

Control over water supply and distribution is critical for agriculture in drylands where manipulating surface runoff often serves the dual purpose of erosion control. However, little is known of the geomorphic impacts and legacy effects of rangeland water manipulation infrastructure, especially if not maintained. This study investigated the geomorphic impacts of structures such as earthen berms, water control gates, and stock tanks, in a semiarid rangeland in the southwestern USA that is responding to both regional channel incision that was initiated over a century ago, and a more recent land use change that involved cattle removal and abandonment of structures. The functional condition of remnant structures was inventoried, mapped, and assessed using aerial imagery and lidar data. Headcut initiation, scour, and channel incision associated with compromised lateral channel berms, concrete water control structures, floodplain water spreader berms, and stock tanks were identified as threats to floodplains and associated habitat. Almost half of 27 identified lateral channel berms (48%) have been breached and 15% have experienced lateral scour; 18% of 218 shorter water spreader berms have been breached and 17% have experienced lateral scour. A relatively small number of 117 stock tanks (6%) are identified as structurally compromised based on analysis of aerial imagery, although many currently do not provide consistent water supplies. In some cases, the onset of localized disturbance is recent enough that opportunities for mitigation can be identified to alter the potentially damaging erosion trajectories that are ultimately driven by regional geomorphic instability. Understanding the effects of prior land use and remnant structures on channel and floodplain morphologic condition is critical because both current land management and future land use options are constrained by inherited land use legacy effects. Published 2017. This article is a U.S. Government work and is in the public domain in the USA