Population genetic diversity and structure of a dominant tropical seagrass,Cymodocea rotundata,in the Western Pacific region

Cymodocea rotundata is an ecologically important tropical pioneer seagrass species distributed in the Indo‐Pacific region. The population genetic diversity and structure of this species were analysed at 46 sites spanning the Philippines, Ryukyu Islands (northern limit) and Hainan Island, by using microsatellite simple sequence repeat (SSR) markers. Analyses revealed the persistence of C. rotundata likely relies on local population dynamics and fitness influenced by environmental gradients, with sexual reproduction prevalent in the Philippines while the Ryukyu and Hainan populations were predominantly established by clonal spread. Analysis of molecular variance showed significant genetic differentiation (P < 0.001) among three geographic regions: the Philippines, Ryukyu and Hainan. Furthermore, the mean fixation index value was very high (F_ST = 0.36), indicating poor dispersal potential or limited gene flow. Allelic richness and heterozygosity of C. rotundata was comparable in the Philippines and Ryukyu Islands populations. More private alleles were found in the Philippines and excess heterozygotes in the Ryukyu Islands. STRUCTURE analysis revealed that the Ryukyu and Hainan populations were mosaics of admixed alleles of individuals from the Philippines. An assignment test suggested that recruitment occurs from the Northeast Philippines to Ryukyu Islands. These results suggest that the Philippine populations are tropical seagrass hotspots and perhaps the origin of the populations in the Ryukyu and Hainan Islands. This scenario is most likely driven by the Kuroshio Current and island integration events during plate tectonic activities. The Philippine Archipelago is considered of high importance for conservation objectives and management plan of seagrasses. Likewise, the Ryukyu Islands are also important in terms of conserving regional diversity because locally adapted genotypes have important evolutionary potential in the face of environmental change.     

Latitudinal change in benthic foraminiferal fauna by ITCZ movement along the ~131°W transect in the equatorial Pacific Ocean

Modern and fossil benthic foraminifera were examined from nine surface sediments and two piston cores along the ~131°W transect in the equatorial Pacific Ocean. This study was conducted to clarify the biotic response of abyssal benthic foraminifera during the last 220 ka to changes in the seasonal extent of the Intertropical Convergence Zone (ITCZ). The abundance of modern benthic foraminifera was high at stations between the equator and 6°N, whereas it was low at stations north of 6°N, which is generally consistent with the latitudinal CaCO₃ distribution of surface sediments. The northward increase of Epistominella exigua from the equator to ~6°N is similar to the seasonal variations in chlorophyll-a concentrations in the surface water and ITCZ position along ~131°W. This species was more common at core PC5103 (~6°N) than at core PC5101 (~2°N) after ~130 ka, when the Shannon-Wiener diversity (H’) between the two cores started to diverge. Hence, the presentday latitudinal difference in benthic foraminifera (E. exigua and species diversity) between ~2°N and ~6°N along ~131°W has been generally established since ~130 ka. According to the modern relationship between the seasonality of primary production and seasonal ITCZ variations in the northern margin of the ITCZ, the latitudinal divergence of benthic foraminiferal fauna between ~2°N and ~6°N since ~130 ka appear to have been induced by more distinct variations in the seasonal movement of ITCZ.     

A New Fall-Rate Equation for T-5 Expendable Bathythermograph (XBT) by TSK

The accuracy of the manufacturer’s fall-rate equation for the T-5 Model of expendable bathythermograph (XBT) has been investigated based on about 300 collocated pairs of XBT-CTD (Conductivity-Temperature-Depth profiler) measurements in various climatological regions. We found that the equation systematically overestimates depth by about 5% for the T-5 produced by Tsurumi Seiki, Co. Ltd. (TSK), but almost no bias is associated with the T-5 produced by Sippican, Inc., in USA. The cause of this difference is not clear, because the two manufacturers’ T-5 probes are reported to have identical shape and weight in water. We propose a new fall-rate equation for the TSK T-5: z(t) = 6.54071t - 0.0018691t ², where z(t) is depth in meters at time, t, in seconds.     

Finite-element Simulation of Seismic Ground Motion with a Voxel Mesh

— Accurate simulation of seismic ground motion for three-dimensionally complex topography and structures is one of the most important goals of strong motion seismology. The finite-element method (FEM) is well suited for this kind of simulation, since traction-free conditions are already included in the formulation, and the Courant condition is less strict than for the finite-difference method (FDM). However, the FEM usually requires both large memory and computation time. These limitations can be overcome by using a mesh consisting of voxels (rectangular prisms) with isotropy built into the explicit formulation of the dynamic matrix equation. Since operators in the voxel FEM are the combinations of ordinary FDM operators and additional terms, the method keeps accuracy of the same order as FDM and the terms relax the Courant condition. The voxel FEM requires a similar amount of memory and only takes 1.2～1.4 times longer computation time. The voxel mesh can be generated considerably faster than the popular tetrahedral mesh. Both ground motions and static displacements due to a point or line source can be calculated using the voxel FEM approach. Comparisons with the reflectivity method and theoretical solutions demonstrate the successful implementation of the method, which is then applied to more complex problems.     

Detecting fluctuations of the Kuroshio axis south of Japan using TOPEX/POSEIDON altimeter data

Sea surface dynamic topography (SSDT) can be divided into temporal mean SSDT and fluctuation SSDT. The former is approximated with a climatological mean SSDT and the latter is derived from satellite altimetry data, to give an approximated total SSDT (called a composite SSDT). The method is applied to detecting fluctuations of the Kuroshio axis south of Japan using TOPEX/POSEIDON altimeter data from the first year mission in 1992–1993. The fluctuation SSDT averaged over a wide area south of Japan clearly shows an annual cycle with an amplitude of about 15 cm. Temporal changes of SSDT along a subsatellite track crossing the Kuroshio compare moderately well with those estimated from repeated hydrographic observations, although there is a discrepancy of unknown origin. The composite SSDT also compares well with SSDT estimated from the same hydrographic data. Horizontal distribution of the surface geostrophic velocity component normal to subsatellite tracks is derived every ten days from the composite SSDT. Most locations of estimated strong eastward geostrophic velocities coincide well with locations of the Kuroshio axis determined every 15 days fromin situ surface velocity measurements on various vessels; for example, a fairly large meander of the Kuroshio south of Honshu is clearly detected. It is concluded that the composite SSDT can be used reliably to detect fluctuations of the Kuroshio axis south of Japan.     

Sulfate reduction using methane in sediments beneath a bathyal “cold seep” giant clam community off Hatsushima Island, Sagami Bay, Japan

Two sandy sediment cores (Cores D227-120 and D380) were collected from inside a deep-sea giant clam (Calyptogena soyoae) community off Hatsushima Island, western Sagami Bay, central Japan (35°59.9′N, 139°13.6′E; 1160 m deep) and a muddy sediment core (Core D227-202) was obtained from outside the community by the submersibleShinkai 2000. The chloride concentration of the pore waters is constant vertically and sulfate reduction using sedimentary organic matter occurs in Core D227-202 (21 cm long). The chloride concentrations are lower by 7% at the 7.5–9 cm depth in Core D227-120 (9 cm long) and by 3% at the 11–12 cm depth in Core D380 (16 cm long) than those of the overlying bottom waters in the cores from inside of the community. Sulfate concentration decreases remarkably and dissolved inorganic carbon, alkalinity, ammonium-N, and hydrogen sulfide concentrations increase significantly with increasing depth in Core D380.δ³⁴S values of sulfate ions increase from +20.5 to +35.3‰ andδ¹³C values of dissolved inorganic carbon decrease drastically from −7.0 to −45‰ with increasing depth from the top to the bottom of the core, although theδ¹³C values of the organic carbon of the sediments are−23.7 ± 0.9‰ in Core D380. These results indicate that sulfate reduction using methane is active within the sediments just beneath the living clams and that the hydrogen sulfide produced can be used by endosymbiotic sulfur oxidizing bacteria living in the gills ofC. soyoae in the community.     

Interpretation of charging on fracture or frictional slip surface of rocks

Fracturing and frictional sliding of quartz and granite under dry condition generates fractoluminescence, charged particle emission and electromagnetic radiation. Various kinds of experiments indicate that surface charge density on fracture or frictional slip surface of quartz and granite is 10⁻⁴ to 10⁻² C/m² which is larger than bound charges induced by the disappearance of piezoelectricity due to the release of stress. Hole and electron trapping centers, which is found in semiconductor devices with the Si–SiO₂ system, are causes of surface charging on fracture or frictional slip surface of quartz crystal. The quantity of the surface charge is enough to cause corona discharge that can generate earthquake lights. The mechanism considering the hole and electron trapping centers has a probability to explain why non-piezoelectric minerals or rocks generate electromagnetic phenomena. It can be one of origins of seismo-electromagnetic phenomena (SEP).     

North Pacific Subtropical Mode Waters Observed in Long XBT Cross Sections along 32.5°N Line

The S/V Shoyo, of the Hydrographic Department, Japan Coast Guard, has conducted high-density expendable bathythermograph (XBT) measurements along the 32.5°N line in the North Pacific every year from 1990 to 1993 as a part of the Japanese-World Ocean Circulation Experiment (WOCE). These XBT data are analyzed here, focusing on year-to-year variations of the inventory and core layer temperature (CLT) of the North Pacific subtropical mode water (NPSTMW). Large year-to-year changes are found in the NPSTMW CLTs estimated in longitudes between 140°E and 160°E. CLT values were found of 17.4°C in 1990, 17.1°C in 1991, 17.3°C in 1992 and 17.6°C in 1993. Inspection of the wintertime westerlies over the formation area and sea surface temperature distribution revealed that this change in CLT can be qualitatively attributed to the strength of atmospheric cooling in the formation area in the previous winter. Although a large year-to-year variation of NPSTMW inventory was also found, it is hard to state any relationship between CLT and atmospheric forcing. There is a possibility that different observational seasons may affect the inventory. It has also been found that the thermocline depth in 1991 was shallower in the sea area east of 180° than in 1992 and 1993. Associated with this change, the North Pacific central mode water (NPCMW), characterized by thermostad with temperatures ranging from 14°C to 11°C, appears in the sea area east of 180° in the 1992 and 1993 cross sections. The 1993 cross section, which ranged from the Japanese coast to the west coast of North America, possessed another thermostad in the surface layer, with a temperature of about 17°C in the eastern part of the cross section, off California. This revised version was published online in August 2006 with corrections to the Cover Date.