Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study

The stratified water column of the Black Sea is partitioned into oxic, suboxic, and euxinic zones, each characterized by different biogeochemical processes and by distinct microbial communities. In 2003, we collected particulate matter by large volume in situ filtration at the highest resolution to date for lipid biomarker analysis and bacterioplankton for enumeration of major prokaryotic groups. Abundances of several prokaryotic groups were estimated using CARD-FISH probes specific for Bacteria, Archaea (Crenarchaeota and Euryarchaeota), epsilonproteobacteria (mainly sulfide oxidizers) and sulfate reducing bacteria. We also measured a wide range of bacterial and archaeal lipid biomarkers. Depth distributions of diagnostic biomarkers are matched with zonation of microbial processes, including aerobic bacterial oxidation of methane, oxidation of ammonium by bacteria and archaea, metal reduction, and sulfide oxidation at the chemocline, and bacterial sulfate reduction and anaerobic oxidation of methane by archaea in the anoxic zone. Cell densities for archaea and sulfate reducing bacteria are estimated based on water column biomarker concentrations and compared with CARD-FISH results.     

Trace fossils of a cyclic chalk-marl succession; the upper Maastrichtian Rørdal Member, Denmark

Trace fossils from an upper Maastrichtian cyclic chalk-marl succession, the Rørdal Member, exposed in the Rørdal quarry, Denmark, are analysed in order to test whether the changes in substrate lithology exerted any control over the ichnodiversity, tiering complexity, and density of the infauna. The cyclicity is interpreted as caused by orbital changes within the Milankovitch frequency band. The carbonate content varies between 71 and 82 weight% in the marl and 82-92 weight% in the chalk beds. The material is based on 19 samples collected from six chalk and marl beds. The investigated bedding-normal sample surfaces vary in area between 29 and 155 cm². Eight ichnogenera and two undetermined ichnogenera are recognised. The member is characterised by three ichnofabrics (A, B and C). The ichnofabric analysis is based on texture and internal structure of the sediments resulting from bioturbation. Ichnofabric A is found only in chalk samples and shows a poor preservation of trace fossils, whereas ichnofabric C is found in a few chalk and all marl samples and comprises a very dense, diverse and well preserved ichnofauna representing a high tiering complexity. Ichnofabric B represents an intermediate situation between ichnofabrics A and C and occurs in chalk samples immediately adjacent to marl beds. The observed changes in ichnofabrics between chalk and marl are related to the amount of clay in the samples and the differences in the occurrence of trace fossils are interpreted as due to differences in the visibility of traces between chalk and marl and not due to differences in ecological stress upon the endobenthic community of the two lithologies. The study thus provides an excellent example of how the effect of taphonomic factors may give a misleading and biased impression of apparent differences in the endobenthic community between chalk and marl.     

Non-tidal variations in the deflection of the vertical at Beijing Observatory

At Beijing Observatory both astrometric and gravimetric observations are available to study the non-tidal variations in the deflections of the vertical (or non-tidal plumbline variations, PLVs). From repeated gravimetric observations performed in a network around the observatory, the PLVs at Beijing Observatory during the period 1987.0–1996.0 have been calculated. After comparison with the observational residuals (which also contain the PLV components) of the photoelectric astrolabe located at the observatory, the accuracy of the obtained PLV results has been examined. It is shown that, due to the asymmetry of the gravimetric network, the qualities of the two different PLV components are not equal. The longitude component of the PLV at Beijing has been determined successfully, to be of the order of 0.05, with a contribution of about 0.02 in the inter-annual time scale. The result for the latitude PLV component is not good enough to draw a conclusion. Although both techniques are able to measure the PLV, the result of the determination depends very much on the availability of observational data.     

The biostratigraphy and formational relationships of the upper aeronian and lower telychian (llandovery,silurian) formations of western mid-wales

The stratigraphical relationships of the upper Aeronian-lower Telychian formations in the Aberystwyth area are examined in the light of a new biostratigraphical subdivision of this interval based on graptolites, in which part of the Monograptus turriculatus Biozone is divided into six subzones and the Stimulograptus halli Biozone is resurrected. In the Aberystwyth area (B.G.S. 1:50 000 Sheet 163 (1984)) there is shown to be greater diachroneity of formational —boundaries than previously recognized. Notably, the Cwmsymlog Formation facies persisted in the northeast of the area far longer than anywhere else, due to the persistence of a bathymetric high into the lower Telychian. Also, the basal beds of the Aberystwyth Grits in the west of the area are shown to be of the same age as the uppermost beds of the Devil's Bridge Formation in the east. Thus for a short period the area was subject to turbiditic incursions from two sources. The degree of diachroneity of the base of the Aberystwyth Grits Formation as a whole is less than previously thought — the oldest beds are approximately one subzone older in the south than in the north. The core of the in the clinal pericline responsible for the crescentic outcrop pattern of the Aberystwyth Grits is demonstrated to lie in the vicinity of Llanrhystud, rather than at Aberarth as previously suggested. Four new graptolite species are described and one new genus is erected.     

Barium uptake into the shells of the common mussel (Mytilus edulis) and the potential for estuarine paleo-chemistry reconstruction

In this study we test if calcite shells of the common mussel, Mytilus edulis, contain barium in proportion to the water in which they grew. Similar to all bivalves analyzed to date, the [Ba/Ca]_shell profiles are characterized by a relatively flat background [Ba/Ca]_shell, interrupted by sharp [Ba/Ca]_shell peaks. Previous studies have focused on these [Ba/Ca]_shell peaks, but not on the background [Ba/Ca]_shell. We show that in both laboratory and field experiments, there is a direct relationship between the background [Ba/Ca]_shell and [Ba/Ca]_water in M. edulis shells. The laboratory and field data provided background Ba/Ca partition coefficients (D_Ba) of 0.10 ± 0.02 and 0.071 ± 0.001, respectively. This range is slightly higher than the D_Ba previously determined for inorganic calcite, and slightly lower than foraminiferal calcite. These data suggest that M. edulis shells can be used as an indicator of [Ba/Ca]_water, and therefore, fossil or archaeological M. edulis shells could be used to extend knowledge of estuarine dissolved Ba throughputs back in time. Moreover, considering the inverse relationship between [Ba/Ca]_water and salinity, background [Ba/Ca]_shell data could be used as an estuary specific indicator of salinity. The cause of the [Ba/Ca]_shell peaks is more confusing, both the laboratory and field experiments indicate that they cannot be used as a direct proxy of [Ba/Ca]_water or phytoplankton production, but may possibly be caused by barite ingestion.     

Revised activity–composition models for clinopyroxene and amphibole

Recent activity–composition models for clinopyroxene and amphibole are revised to provide better consistency with observed phase relations in natural rocks. For clinopyroxene, the calibration in NCFMAS is retained, but the incorporation of acmite is revised to improve the partitioning of ferric iron between coexisting clinopyroxenes. For amphibole, the NCFMASH calibration is retained, but the addition of ferric iron is changed to provide consistency with the clinopyroxenes. The thermodynamics of orthoamphibole (gedrite) is also adjusted to resolve an unrelated inconsistency. The effects of these improvements are illustrated through comparison of calculated pseudosections produced with the existing and new models with natural data from lawsonite eclogites.     

Ranking of national-level adaptation options. An editorial comment

de Bruin et al. (Clim Change, 2009) report on an expert assessment aimed at prioritizing adaptation options in several climate-sensitive sectors of the Netherlands. Their results show that even in a country with high economic, institutional and technical capacity, it is not currently feasible to prioritize national-level adaptation options based on social cost-benefit analysis because of methodological difficulties and insufficient quantitative data. Multi-criteria analysis based on qualitative indicators can help prioritizing adaptation options but the analysis detected strong conflicts between priority and feasibility criteria. The specific results of the ranking exercise should be treated with caution due to weaknesses in the selection of adaptation options and the definition of evaluation criteria. The authors assert that their methods can be transferred to other regions but substantial modifications are likely required in developing countries with large current climate risks, fewer economic resources, and substantial social inequalities.     

Soil amplification of plane seismic waves

Amplitudes of surface particle velocities are calculated when time-harmonic seismic waves of uniform amplitude are incident upon an arbitrary stratified elastic soil layer from the underlying bedrock. Whereas previous workers have mainly treated normally incident S waves, we allow the waves to be of SV, P, or SH types and to have arbitrary angles of incidence. Following standard practice the problem is set up as a matrix differential system, but in such a way that incident SV and P waves may be treated together (the system for SH decoupling). Though complicated, the 4 × 4 SVP system has considerable structure which is elucidated in Appendices 1 and 2. These results, though not altogether new, are of independent interest, and are gathered together in concise form for reference. The theory for low- and for high-frequency approximations is given. The main results of the work are illustrated by two numerical examples: Model 1 where the soil layer is homogeneous; and Model 2 where the soil layer has a linear velocity profile.     

Volatiles H2O,CO2, and Cl in a subduction related basalt

The products of the 1974 eruption of Fuego, a subduction zone volcano in Guatemala, have been investigated through study of silicate melt inclusions in olivine. The melt inclusions sampled liquids in regions where olivine, plagioclase, magnetite, and augite were precipitating. Comparisons of the erupted ash, groundmass, and melt inclusion compositions suggest that the inclusions represent samples of liquids present in a thermal boundary layer of the magma body. The concentrations of H₂O and CO₂ in glass inclusions were determined by a vacuum fusion manometric technique using individual olivine crystals (Fo77 to Fo71) with glass inclusion compositions that ranged from high-alumina basalt to basaltic andesite. Water, Cl, and K₂O concentrations increased by a factor of two as the olivine crystals became more iron-rich (Fo77 to Fo71) and as the glass inclusions increased in SiO₂ from 51 to 54 wt.% SiO₂. The concentration of H₂O in the melt increased from 1.6 wt.% in the least differentiated liquid to about 3.5% in a more differentiated liquid. Carbon dioxide is about an order of magnitude less abundant than H₂O in these inclusions. The gas saturation pressures for pure H₂O in equilibrium with the melt inclusions, which were calculated from the glass inclusion compositions using the solubility model of Burnham (1979), are given approximately by P(H₂O)(Pa)=(SiO₂−48.5 wt.%) × 1.45 × 10⁷. The concentrations of water in the melt and the gas saturation pressures increased from about 1.5% to 3.5% and from 300 to 850 bars, respectively, during pre-eruption crystallization.