Spatial and temporal variation in subtidal molluscan diversity amongst temperate estuarine habitats

Effective management of marine ecosystems is enhanced when detailed information on biodiversity is available. Key information to underpin management actions and conservation planning includes relationships between species assemblages and environmental gradients, and information on species distributions. We conducted a subtidal biodiversity assessment of surface‐dwelling subtidal molluscs in eight a priori defined habitat types using underwater visual censuses to quantitatively explore relationships between molluscan assemblages, and their correlation with benthic habitats and abiotic variables. In addition, variations in diversity were examined for two key habitat types (areas dominated by Dendronephthya australis and by filter feeders) over a period of 15 months to examine temporal change. We found that molluscs form distinct assemblages within subtidal habitats, but that assemblages within key habitats show inherent temporal variability. Regional (gamma) diversity of molluscs was found to result from a combination of: (i) within habitat alpha diversity, which increased with habitat complexity; (ii) between habitat beta diversity, with significant differences in molluscan assemblages amongst habitats with differing benthic growth, substrate type, and depth; and (iii) temporal beta diversity, with significant changes detected in molluscan assemblages over time. The results demonstrate how habitats and abiotic variables (principally depth and substrate type) combine to contribute to molluscan biodiversity in temperate estuaries, and illustrate the value of these factors as surrogates for surface‐dwelling subtidal molluscs in conservation planning.     

Circulation and dispersion in a cancellate coast: The rivers,bays and estuaries of central Maine

The glacially carved central coast of Maine is incised by river systems with interconnecting channels, offshore-trending submarine ridges, and narrow passages between nearshore islands and headlands. The tidal range exceeds 3 m, leading to complex and vigorous circulation patterns with strong flows in narrow channels, near river mouths, and between islands. The spongiform coastal morphology allows enhanced exchange between offshore waters, estuaries and internecine bays, resulting in rapid dispersal of nutrients, larvae and contaminants throughout the region. A fine-grid numerical circulation model has been used to examine the influences of the tides, river flows and winds on the dispersion of lobster larvae and pollutants in the nearshore and riverine environment. This paper describes the model application, presents a few salient features of the circulation patterns, and examines some implications for the coastal environment. For example, under realistic tides and variable southwest summer winds, about 80% of neutral near-surface particles introduced near the offshore islands (a proxy for stage IV lobster larvae from offshore sources) remain within a few km of the islands over a two-week period. On the other hand, a persistent, periodic sea breeze can remove more than two-thirds of the particles from the domain over the same period. Tidal mixing disperses pollutants entering the upper Kennebec River to the offshore and through internecine passages in about one week.     

Velocity potential formulations of highly accurate Boussinesq-type models

The highly accurate Boussinesq-type equations of Madsen et al. (Madsen, P.A., Bingham, H.B., Schäffer, H.A., 2003. Boussinesq-type formulations for fully nonlinear and extremely dispersive water waves: Derivation and analysis. Proc. R. Soc. Lond. A 459, 1075–1104; Madsen, P.A., Fuhrman, D.R., Wang, B., 2006. A Boussinesq-type method for fully nonlinear waves interacting with a rapidly varying bathymetry. Coast. Eng. 53, 487–504); Jamois et al. (Jamois, E., Fuhrman, D.R., Bingham, H.B., Molin, B., 2006. Wave-structure interactions and nonlinear wave processes on the weather side of reflective structures. Coast. Eng. 53, 929–945) are re-derived in a more general framework which establishes the correct relationship between the model in a velocity formulation and a velocity potential formulation. Although most work with this model has used the velocity formulation, the potential formulation is of interest because it reduces the computational effort by approximately a factor of two and facilitates a coupling to other potential flow solvers. A new shoaling enhancement operator is introduced to derive new models (in both formulations) with a velocity profile which is always consistent with the kinematic bottom boundary condition. The true behaviour of the velocity potential formulation with respect to linear shoaling is given for the first time, correcting errors made by Jamois et al. (Jamois, E., Fuhrman, D.R., Bingham, H.B., Molin, B., 2006. Wave-structure interactions and nonlinear wave processes on the weather side of reflective structures. Coast. Eng. 53, 929–945). An exact infinite series solution for the potential is obtained via a Taylor expansion about an arbitrary vertical position z = zˆ. For practical implementation however, the solution is expanded based on a slow variation of zˆ and terms are retained to first-order. With shoaling enhancement, the new models obtain a comparable accuracy in linear shoaling to the original velocity formulation. General consistency relations are also derived which are convenient for verifying that the differential operators satisfy a potential flow and/or conserve mass up to the order of truncation of the model. The performance of the new formulation is validated using computations of linear and nonlinear shoaling problems. The behaviour on a rapidly varying bathymetry is also checked using linear wave reflection from a shelf and Bragg scattering from an undulating bottom. Although the new models perform equally well for Bragg scattering they fail earlier than the existing model for reflection/transmission problems in very deep water.     

Tsunami generation,propagation, and run-up with a high-order Boussinesq model

In this work we extend a high-order Boussinesq-type (finite difference) model, capable of simulating waves out to wavenumber times depth kh < 25, to include a moving sea-bed, for the simulation of earthquake- and landslide-induced tsunamis. The extension is straight forward, requiring only an additional term within the kinematic bottom condition. As first test cases we simulate linear and nonlinear surface waves generated from both positive and negative impulsive bottom movements. The computed results compare well against earlier theoretical, numerical, and experimental values. Additionally, we show that the long-time (fully nonlinear) evolution of waves resulting from an upthrusted bottom can eventually result in true solitary waves, consistent with theoretical predictions. It is stressed, however, that the nonlinearity used far exceeds that typical of geophysical tsunamis in the open ocean. The Boussinesq-type model is then used to simulate numerous tsunami-type events generated from submerged landslides, in both one and two horizontal dimensions. The results again compare well against previous experiments and/or numerical simulations. The new extension compliments recently developed run-up capabilities within this approach, and as demonstrated, the model can therefore treat tsunami events from their initial generation, through their later propagation, and final run-up phases. The developed model is shown to maintain reasonable computational efficiency, and is therefore attractive for the simulation of such events, especially in cases where dispersion is important.     

Fisheries traffic: The poor relation of port devolution. Lessons from Spanish state ports of general interest

The fisheries sector is currently contending with the hectic development of its own political economy framework being convulsed by the dynamics of decentralisation. This process is enshrouded in an environment of economic globalisation, taking place against the backdrop of the governance approach. With this situation as the starting point, the main goal of this paper is to quantify the effects that the Spanish port devolution process might have on the Spanish fisheries sector through the use of a transfer function model; the volumes of landings at State ports of general interest and their cash value are taken as dependent variables.     

The impact of scour processes on a smothered reef system in the Irish Sea

The Irish Sea, like many marine areas, is threatened by anthropogenic activities. In particular the Pisces Reef system, a series of smothered rocky reefs are subject to fishing pressures as a result of their position within a Nephrops norvegicus fishery. In an area of sediment deposition and retention the reefs modify the environment by increasing the energy of near-bottom currents which results in localised scouring. This is the first study to attempt to characterise and investigate the ecological functioning of the Pisces Reef system. A multidisciplinary approach was essential for accurate investigation of the area. To facilitate more effective management of the benthic habitats of the Reef system, this study integrates acoustic, seismic, grab sampling and video ground-truthing methods for benthic habitat discrimination. Orientation of the scour hollows also suggest that seabed features could be used to infer dominant flow regimes such as the Irish Sea Gyre. The data revealed significant geology–benthos relationships. A unique biotope was described for the reef habitat and it was demonstrated that scouring may influence community composition through disturbance mechanisms. This study provides preliminary information required for management of a unique habitat within a uniform region.     

Seasonal changes in community composition and trophic structure of fish populations of five salt marshes along the Essex coastline, United Kingdom

European intertidal salt marshes are important nursery sites for juvenile fish and crustaceans. Due to the increasing threat of habitat loss, the seasonal changes of salt marsh fish communities need to be understood in order to appreciate the ecological and economic importance of the saltmarsh habitat. This study was the first in Great Britain to investigate the seasonal changes of salt marsh fish communities and the variation in community structure between closely located marsh habitats. Between February 2007 and March 2008, five marshes on three estuaries of the Essex coastline were sampled using flume nets to block off intertidal creeks at high tide. Fourteen fish species were caught. The community overall was dominated by three species that made up 91.6% of the total catch: the common goby Pomatoschistus microps (46.2% of the total catch), juvenile herring Clupea harengus (24.3%), and juvenile and larval sea bass Dicentrarchus labrax (21.2%). Cluster analysis demonstrated clear seasonal patterns, with some community structures unique to specific marshes or estuaries. The marsh fish community shifts from a highly diverse community during spring, to a community dominated by D. labrax and P. microps in autumn, and low diversity during winter months. Gravimetric stomach content analysis of fish community identified three main trophic guilds; macroinvertivores, planktivores and omnivores. The macroinvertivore feeding guild contained D. labrax and P. microps, the two most frequently occurring species. This investigation demonstrates the importance of British salt marshes as nursery habitats for commercial fish species.     

Water level variations in the Neuse and Pamlico Estuaries,North Carolina due to local and remote forcing

Water level time series records from the Neuse and Pamlico River Estuaries were statistically compared to local and distant wind field data, water level records within the Pamlico Sound and also coastal ocean sites to determine the relative contribution of each time series to water levels in the Neuse and Pamlico Estuaries. The objectives of this study were to examine these time series data using various statistical methods (i.e. autoregressive, empirical orthogonal function analysis (EOF), exploratory data analysis (EDA)) to determine short- and long-time-scale variability, and to develop predictive statistical models that can be used to estimate past water level fluctuations in both the Neuse Estuary (NE) and Pamlico Estuary (PE). Short- and long-time-scale similarities were observed in all time series of estuarine, Pamlico Sound and subtidal coastal ocean water level and wind component data, due to events (nor'easters, fronts and tropical systems) and seasonality. Empirical orthogonal function analyses revealed a strong coastal ocean and wind field contribution to water level in the NE and PE. Approximately 95% of the variation was captured in the first two EOF components for water level data from the NE, sound and coastal ocean, and 70% for the PE, sound and coastal ocean. Spectral density plots revealed strong diurnal signals in both wind and water level data, and a strong cross correlation and coherency between the NE water level and the North/South wind component. There was good agreement between data and predictions using autoregressive statistical models for the NE (R² = 0.92) and PE (R² = 0.76). These methods also revealed significant autoregressive lags for the NE (days 1 and 3) and for the PE (days 1, 2 and 3). Significant departures from predictions are attributed to local meteorological and hydrological events. The autoregressive techniques showed significant predictive improvement over ordinary least squares methods. The results are considered within the context of providing long time-scale hindcast data for the two estuaries, and the importance of these data for multidisciplinary researchers and managers.