Observations of polar patches generated by solar wind Alfvén wave coupling to the dayside magnetosphere

A long series of polar patches was observed by ionosondes and an all-sky imager during a disturbed period (K_p = 7- and IMF B_z <0). The ionosondes measured electron densities of up to 9 × 10¹¹ m⁻³ in the patch center, an increase above the density minimum between patches by a factor of ≈4.5. Bands of F-region irregularities generated at the equatorward edge of the patches were tracked by HF radars. The backscatter bands were swept northward and eastward across the polar cap in a fan-like formation as the afternoon convection cell expanded due to the IMF B_y > 0. Near the north magnetic pole, an all-sky imager observed the 630-nm emission patches of a distinctly band-like shape drifting northeastward to eastward. The 630-nm emission patches were associated with the density patches and backscatter bands. The patches originated in, or near, the cusp footprint where they were formed by convection bursts (flow channel events, FCEs) structuring the solar EUV-produced photoionization and the particle-produced auroral/cusp ionization by segmenting it into elongated patches. Just equatorward of the cusp footprint Pc5 field line resonances (FLRs) were observed by magnetometers, riometers and VHF/HF radars. The AC electric field associated with the FLRs resulted in a poleward-progressing zonal flow pattern and backscatter bands. The VHF radar Doppler spectra indicated the presence of steep electron density gradients which, through the gradient drift instability, can lead to the generation of the ionospheric irregularities found in patches. The FLRs and FCEs were associated with poleward-progressing DPY currents (Hall currents modulated by the IMF B_y) and riometer absorption enhancements. The temporal and spatial characteristics of the VHF backscatter and associated riometer absorptions closely resembled those of poleward moving auroral forms (PMAFs). In the solar wind, IMP 8 observed large amplitude Alfvén waves that were correlated with Pc5 pulsations observed by the ground magnetometers, riometers and radars. It is concluded that the FLRs and FCEs that produced patches were driven by solar wind Alfvén waves coupling to the dayside magnetosphere. During a period of southward IMF the dawn-dusk electric field associated with the Alfvén waves modulated the subsolar magnetic reconnection into pulses that resulted in convection flow bursts mapping to the ionospheric footprint of the cusp.     

A comparative mineralogical study of gas-related sediments of the Gulf of Cádiz

The Gulf of Cádiz area has been extensively surveyed in recent years and several gas-related fluid escape seafloor structures have been identified. In this study, gravity cores, collected during the ANASTASYA/00 and ANASTASYA/01 cruises, on mud volcanoes, hemipelagic sediments and dredged material from diapiric structures, have been studied. A comparative mineralogical analysis by XRD and SEM of samples from different areas has been performed in order to determine whether there is a characteristic mineralogy related to these fluid escape structures, and also to determine the origin of the mud matrix and constrain the depth of the parent units. The mineralogical analysis reflects the different origins of the different units described in the cores: hemipelagic material of the slope, clays that underlie the mud volcanoes and are discharged at the sea bottom surface, and authigenic and diagenetic minerals possibly involved in the anaerobic oxidation of methane in the mud volcano sediments.     

Spatio-temporal variability of small copepods (especially Oithona plumifera) in shallow nearshore waters off the south coast of South Africa

Although small copepods are one of the main dietary sources for many commercially important fish, their role in the pelagic trophic dynamics has traditionally been underestimated due to the methodology commonly used in plankton sampling. Temporal variation in abundance of adults and nauplii of small copepods (particularly Oithona plumifera) in nearshore waters on the south coast of South Africa was investigated fortnightly over 14 months at site (km) and location (100 m) scales. Sampling was within <500 m of the shore, where depth was ca. 10 m, using vertical hauls of an 80-μm mesh plankton net from 1 m above the seabed to the surface. Twenty-seven adult copepod taxa were recorded, but Oithona spp. was consistently the most abundant. Taxon richness was 7–19 on each sampling occasion. There was strong temporal variation (Oithona varied between 0 and 2300 m⁻³), but much of this was short-term variability (e.g. between consecutive sampling sessions), with no seasonality or other long-term discernable patterns. There were periods of consistently low numbers, but very high numbers often followed samples with low abundances. Nor was there spatial structure at the location scale, though numbers differed between sites. Despite considerable variability at the location scale within sites, Kenton consistently showed higher densities than High Rocks. Separate analyses, with Bonferroni adjustment, showed that this difference was significant on eight out of 21 occasions for Oithona, six for other pelagic copepods and three for nauplii. This suggests that hydrodynamics favour aggregation of plankton at Kenton. A high degree of short-term variability, with a tendency for aggregation of small zooplankton at certain sites has implications for both pelagic processes and food-web links between the benthic and pelagic environments.     

High-resolution well-log derived dielectric properties of gas-hydrate-bearing sediments, Mount Elbert Gas Hydrate Stratigraphic Test Well, Alaska North Slope

A dielectric logging tool, electromagnetic propagation tool (EPT), was deployed in 2007 in the BPXA-DOE-USGS Mount Elbert Gas Hydrate Stratigraphic Test Well (Mount Elbert Well), North Slope, Alaska. The measured dielectric properties in the Mount Elbert well, combined with density log measurements, result in a vertical high-resolution (cm-scale) estimate of gas hydrate saturation. Two hydrate-bearing sand reservoirs about 20 m thick were identified using the EPT log and exhibited gas-hydrate saturation estimates ranging from 45% to 85%. In hydrate-bearing zones where variation of hole size and oil-based mud invasion are minimal, EPT-based gas hydrate saturation estimates on average agree well with lower vertical resolution estimates from the nuclear magnetic resonance logs; however, saturation and porosity estimates based on EPT logs are not reliable in intervals with substantial variations in borehole diameter and oil-based invasion.EPT log interpretation reveals many thin-bedded layers at various depths, both above and below the thick continuous hydrate occurrences, which range from 30-cm to about 1-m thick. Such thin layers are not indicated in other well logs, or from the visual observation of core, with the exception of the image log recorded by the oil-base microimager. We also observe that EPT dielectric measurements can be used to accurately detect fine-scale changes in lithology and pore fluid properties of hydrate-bearing sediments where variation of hole size is minimal. EPT measurements may thus provide high-resolution in-situ hydrate saturation estimates for comparison and calibration with laboratory analysis.     

Airborne imagery of a disintegrating Sargassum drift line

Airborne hyperspectral and thermal infrared imagery collected over the Florida Current provide a view of the disintegration of a Sargassum drift line in 5 m s⁻¹ winds. The drift line consists mostly of rafts 20-80 m² in size, though aggregations larger than 1000 m² also occur. Rafts tend to be elongated, curved in the upwind direction, and 0.1-0.5 °C warmer than the surrounding ocean surface. Long weed ‘trails’ extending upwind from the rafts are evidence of plants dropping out and being left behind more rapidly drifting rafts. The raft line may be a remnant of an earlier Sargassum frontal band, which is detectible as an upwind thermal front and areas of submerged weed. Issues are identified that require future field measurements.     

Formation rates of Subantarctic mode water and Antarctic intermediate water within the South Pacific

The formation of Subantarctic Mode Water (SAMW) and Antarctic Intermediate Water (AAIW) significantly contributes to the total uptake and storage of anthropogenic gases, such as CO₂ and chlorofluorocarbons (CFCs), within the world's oceans. SAMW and AAIW formation rates in the South Pacific are quantified based on CFC-12 inventories using hydrographic data from WOCE, CLIVAR, and data collected in the austral winter of 2005. This study documents the first wintertime observations of CFC-11 and CFC-12 saturations with respect to the 2005 atmosphere in the formation region of the southeast Pacific for SAMW and AAIW. SAMW is 94% and 95% saturated for CFC-11 and CFC-12, respectively, and AAIW is 60% saturated for both CFC-11 and CFC-12. SAMW is defined from the Subantarctic Front to the equator between potential densities 26.80-27.06 kg m⁻³, and AAIW is defined from the Polar Front to 20°N between potential densities 27.06-27.40 kg m⁻³. CFC-12 inventories are 16.0×10⁶ moles for SAMW and 8.7×10⁶ moles for AAIW, corresponding to formation rates of 7.3±2.1 Sv for SAMW and 5.8±1.7 Sv for AAIW circulating within the South Pacific. Inter-ocean transports of SAMW from the South Pacific to the South Atlantic are estimated to be 4.4±0.6 Sv. Thus, the total formation of SAMW in the South Pacific is approximately 11.7±2.2 Sv. These formation rates represent the average formation rates over the major period of CFC input, from 1970 to 2005. The CFC-12 inventory maps provide direct evidence for two areas of formation of SAMW, one in the southeast Pacific and one in the central Pacific. Furthermore, eddies in the central Pacific containing high CFC concentrations may contribute to SAMW and to a lesser extent AAIW formation. These CFC-derived rates provide a baseline with which to compare past and future formation rates of SAMW and AAIW.     

Analysis of southeast Australian zooplankton observations of 1938-42 using synoptic oceanographic conditions

The research vessel Warreen obtained 1742 planktonic samples along the continental shelf and slope of southeast Australia from 1938-42, representing the earliest spatially and temporally resolved zooplankton data from Australian marine waters. In this paper, Warreen observations along the southeast Australian seaboard from 28°S to 38°S are interpreted based on synoptic meteorological and oceanographic conditions and ocean climatologies. Meteorological conditions are based on the NOAA-CIRES 20th Century Reanalysis Project; oceanographic conditions use Warreen hydrological observations, and the ocean climatology is the CSIRO Atlas of Regional Seas. The Warreen observations were undertaken in waters on average 0.45 °C cooler than the climatological average, and included the longest duration El Niño of the 20th century. In northern New South Wales (NSW), week time-scale events dominate zooplankton response. In August 1940 an unusual winter upwelling event occurred in northern NSW driven by a stronger than average East Australian Current (EAC) and anomalous northerly winds that resulted in high salp and larvacean abundance. In January 1941 a strong upwelling event between 28° and 33°S resulted in a filament of upwelled water being advected south and alongshore, which was low in zooplankton biovolume. In southern NSW a seasonal cycle in physical and planktonic characteristics is observed. In January 1941 the poleward extension of the EAC was strong, advecting more tropical tunicate species southward. Zooplankton abundance and distribution on the continental shelf and slope are more dependent on weekly to monthly timescales on local oceanographic and meteorological conditions than continental-scale interannual trends. The interpretation of historical zooplankton observations of the waters off southeast Australia for the purpose of quantifying anthropogenic impacts will be improved with the use of regional hindcasts of synoptic ocean and atmospheric weather that can explain some of the physically forced natural variability.     

The strengthening East Australian Current, its eddies and biological effects — an introduction and overview

The poleward flowing East Australian Current (EAC) is characterised by its separation from the coast, 100-200 nautical miles north of Sydney, to form the eastward flowing Tasman Front and a southward flowing eddy field. The separation zone greatly influences coastal ecosystems for the relatively narrow continental shelf (only 15-50 km wide), particularly between 32-34°S. In this region the continental shelf has a marked shift in the seasonal temperature-salinity relationship and elevated surface nitrate concentrations. This current parallels the portion of the coast where Australia’s population is concentrated and has a long history of scientific research. However, understanding of physical and biological processes driven by the EAC, particularly in linking circulation to ecosystems, is limited. In this special issue of 16 papers on the EAC, we examine the effects of climatic wind-stress forced ocean dynamics on EAC transport variability and coastal sea level, from ENSO to multi-decadal time scales; eddy formation and structure; fine scale connectivity and larval retention. Comparisons with the poleward-flowing Leeuwin Current on Australia’s west coast show differences in ecosystem productivity that can be attributed to the underlying physics in each region. On average there is double the chlorophyll a concentration on the east coast than the west. In comparison to the Leeuwin, the EAC may have less local retention of larvae and act as a partial barrier to onshore transport, which may also be related to the local spawning and early life history of small pelagic fish on each coast. Inter-annual variations in the EAC transport produce a detectable sea-level signal in Sydney Harbour, which could provide a useful fisheries index as does the Fremantle sea level and Leeuwin Current relationship. The EAC’s eddy structure and formation by the EAC are examined. A particular cold-core eddy is shown to have a “tilt” towards the coast, and that during a rotation the flow of particles may rise up to the euphotic zone and then down beneath. In a warm-core eddy, surface flooding is shown to produce a new shallower surface mixed layer and promote algal growth. An assessment of plankton data from 1938-1942 showed that the local, synoptic conditions had to be incorporated before any comparison with the present. There are useful relationships of water mass characteristics in the Tasman Sea and separation zone with larval fish diversity and abundance, as well as with long-line fisheries. These fisheries-pelagic habitat relationships are invaluable for fisheries management, as well as for climate change assessments.There is further need to examine the EAC influence on rainfall, storm activity, dust deposition, and on the movements by fish, sharks and whales. The Australian Integrated Marine Observing System (IMOS) has provided new infrastructure to determine the changing behaviour of the EAC and its bio-physical interaction with the coasts and estuaries. The forecasting and hindcasting capability developed under the Bluelink project has provided a new tool for data synthesis and dynamical analysis. The impact of a strengthening EAC and how it influences the livelihoods of over half the Australian population, from Brisbane to Sydney, Hobart and Melbourne, is just being realised.     

Integration of biochemical, histochemical and toxicogenomic indices for the assessment of health status of mussels from the Tamar Estuary, U.K

The aim of this study was to examine whether a combination of biochemical, histopathological and toxicogenomic data could be used as a valuable tool for the assessment of biological risk associated with pollutants within the Tamar River and Estuary, S.W. England, U.K. Accordingly, biochemical and histopathological biomarkers (protein carbonyls, lipofuscin, neutral lipids, lysosomal stability [N-acetyl-β-hexosaminidase and neutral red], lysosomal volume, ferric reducing antioxidant power [FRAP] and malonaldehyde [MDA]) and gene expression profiles were assessed in 5 sites from the Tamar River and Estuary (Neal Point, Town Quay, Wilcove, Cremyll Ferry and Whitsand; and a reference site, Trebarwith Strand, N. Cornwall). PAHs were measured in mussel tissue and sediment and metals were measured in mussel tissue only. Data from the biomarkers was integrated into a Mussel Expert System (MES) model to produce a simple assessment of mussel stress. Clear gradients of mussel toxicity were identified by the biomarkers (with the exception of neutral lipids) with the highest impacted animals found furthest up the Tamar, whilst the MES was unable to identify a gradient of effect. Gene expression profiles also indicated a gradient of stress with the greatest number of significantly up- or down- regulated genes found at the uppermost 2 sites. The MES did, however, determine that mussels from all sites, except the reference site, were highly stressed; a conclusion that could not be inferred from the biomarker data alone. It is concluded that the MES is a valuable tool that permits integration and interpretation of complex sets of biomarker data by identifying the biological meaning of biomarker changes.