Documenting hurricane impacts on coral reefs using two-dimensional video-mosaic technology

Four hurricanes impacted the reefs of Florida in 2005. In this study, we evaluate the combined impacts of hurricanes Dennis, Katrina, Rita, and Wilma on a population of Acropora palmata using a newly developed video‐mosaic methodology that provides a high‐resolution, spatially accurate landscape view of the reef benthos. Storm damage to A. palmata was surprisingly limited; only 2 out of 19 colonies were removed from the study plot at Molasses Reef. The net tissue losses for those colonies that remained were only 10% and mean diameter of colonies decreased slightly from 88.4 to 79.6 cm. In contrast, the damage to the reef framework was more severe, and a large section (6 m in diameter) was dislodged, overturned, and transported to the bottom of the reef spur. The data presented here show that two‐dimensional video‐mosaic technology is well‐suited to assess the impacts of physical disturbance on coral reefs and can be used to complement existing survey methodologies.     

The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems: Part II - Performance and application to the California Current System

The Regional Ocean Modeling System (ROMS) 4-dimensional variational (4D-Var) data assimilation systems have been systematically applied to the mesoscale circulation environment of the California Current to demonstrate the performance and practical utility of the various components of ROMS 4D-Var. In particular, we present a comparison of three approaches to 4D-Var, namely: the primal formulation of the incremental strong constraint approach; the dual formulation “physical-space statistical analysis system”; and the dual formulation indirect representer approach. In agreement with theoretical considerations all three approaches converge to the same ocean circulation estimate when using the same observations and prior information. However, the rate of convergence of the dual formulation was found to be inferior to that of the primal formulation. Other aspects of the 4D-Var performance that relate to the use of multiple outer-loops, preconditioning, and the weak constraint are also explored. A systematic evaluation of the impact of the various components of the 4D-Var control vector (i.e. the initial conditions, surface forcing and open boundary conditions) is also presented. It is shown that correcting for uncertainties in the model initial conditions exerts the largest influence on the ability of the model to fit the available observations. Various important diagnostics of 4D-Var are also examined, including estimates of the posterior error, the information content of the observation array, and innovation-based consistency checks on the prior error assumptions. Using these diagnostic tools, we find that more than 90% of the observations assimilated into the model provide redundant information. This is a symptom of the large percentage of satellite data that are used and to some extent the nature of the data processing employed. This is the second in a series of three papers describing the ROMS 4D-Var systems.     

Altering intertidal sediment topography: effects on biodiversity and ecosystem functioning

Sedimentary marine systems are often highly productive and perform important nutrient regeneration functions as they efficiently decompose organic material. In recent years the role of habitat effects and of species composition in ecosystem functioning has become of interest. Estuarine environments are frequently subject to considerable anthropogenic pressures whilst supporting a variety of habitats ranging from well sorted soft muds through biogenically stable sediments to highly mobile coarse sands. There is therefore considerable spatial complexity in habitat type and faunal composition. This study set out to observe the effects of altering the topographical habitat features of an estuarine mudflat on a range of porewater nutrient concentrations (NH₄⁺, NO₃⁻, NO₂⁻, PO₄³⁻ and SiO) collected from four depths (3, 5, 9, and 12 cm) and on faunal composition. Two treatments (Shelled Nets and Net Controls) were used to alter the topography from simple mud to a mussel shell crumble and were compared to un-manipulated Control areas. Sediment granulometry and organic matter content analyses alongside biological traits analysis of the fauna were also conducted.
Differences were observed in porewater nutrient concentrations between the Control and both netted treatments at 5 cm depth only; the species diversity and abundance were also different in the netted treatments compared to the Controls, although no difference between the two manipulated treatments were observed. The changes in faunal composition were attributed solely to the altered topography and the observed nutrient changes were attributed to the faunal alteration rather than the topographical manipulation.     

Second-order wave maker theory using force-feedback control. Part I: A new theory for regular wave generation

Second-order wave maker theory has long been established; the most extensive and detailed approach given by Schäffer [1996. Second-order wave maker theory for irregular waves. Ocean Engineering 23, 47–88]. However, all existing theories assume the wave paddle is driven by a position-feedback motion controller. Early research in the wave power field led to the design of a force-controlled absorbing wave machine [Salter, S., 1982. Absorbing wave-makers and wide tanks. In: Directional Wave Spectra Applications, pp. 185–200]. In addition to operating as an excellent absorber, this machine seemed to introduce very little spurious harmonic content when driven with a first-order command signal. The present paper provides a mathematical model for the operation of wave makers using force-feedback control and seeks to explain this apparent advantage. The model is developed to second-order so that a command signal compensating for the remaining spurious wave is also provided. Due to the complexity of the problem, the model has been limited to flap-type wave machines and the generation of regular waves. A variety of numerical tests in force-control mode have been conducted, indicating that the spurious wave content is greatly reduced when compared to the position-control mode. A separate experimental study validating the theory is presented in a part II paper by the same authors.     

Turbulent dispersion in the ocean

The mathematical framework for turbulent transport in the ocean is reasonably well established. It may be applied to large-scale fields of scalars in the ocean and to the instantaneous or continuous discharge from a point. The theory and its physical basis can also provide an interpretation of passive scalar spectra. Spatial variations in the rate of turbulent transfer can be related to the movement of the center of mass of a scalar and to a formulation in terms of entrainment. The relative dispersion of a scalar with respect to its center of mass and the streakiness of the concentration field within the relative dispersion domain need to be considered. In many of these problems it is valuable to think in terms of simple models for individual streaks, as well as overall statistical properties.     

Detection of deep water benthic macroalgae using image-based classification techniques on multibeam backscatter at Cashes Ledge,Gulf of Maine,USA

Benthic macroalgae form an important part of temperate marine ecosystems, exhibiting a complex three-dimensional character which represents a vital foraging and spawning ground for many juvenile fish species. In this research, image-based techniques for classification of multibeam backscatter are explored for the detection of benthic macroalgae at Cashes Ledge in the Gulf of Maine, USA. Two classifications were performed using QTC-Multiview, differentiated by application of a threshold filter, and macroalgal signatures were independently extracted from the raw sonar datagrams in Matlab. All classifications were validated by comparison with video ground-truth data. The unfiltered classification shows a high degree of complexity in the shallowest areas within the study site; the filtered demonstrates markedly less variation by depth. The unfiltered classification shows a positive agreement with the video ground-truth data; 82.6% of observations recording Laminaria sp., 39.1% of Agarum cribrosum and 100.0% (n = 3) of mixed macroalgae occur within the same acoustically distinct group of classes. These are discrete from the 8.1% recorded agreement with absences and nulls (>40 m) of macrophytes (n = 32) from a total of 86 ground-truth locations. The results of the water column data extraction (WCDE) show similar success, accurately predicting 78.3% of Laminaria sp. and 30.4% of A. cribrosum observations.     

Improving the Coastal Mean Dynamic Topography by Geodetic Combination of Tide Gauge and Satellite Altimetry

Abstract

The ocean mean dynamic topography (MDT) is the surface representation of the ocean circulation. The MDT may be determined by the ocean approach, which involves temporal averaging of numerical ocean circulation model information, or by the geodetic approach, wherein the MDT is derived using the ellipsoidal height of the mean sea surface (MSS), or mean sea level (MSL) minus the geoid as the geoid. The ellipsoidal height of the MSS might be estimated either by satellite or coastal tide gauges by connecting the tide gauge datum to the Earth-centred reference frame. In this article we present a novel approach to improve the coastal MDT, where the solution is based on both satellite altimetry and tide gauge data using new set of 302 tide gauges with ellipsoidal heights through the SONEL network. The approach was evaluated for the Northeast Atlantic coast where a dense network of GNSS-surveyed tide gauges is available. The typical misfit between tide gauge and satellite or oceanographic MDT was found to be around 9?cm. This misfit was found to be mainly due to small scale geoid errors. Similarly, we found, that a single tide gauge places only weak constraints on the coastal dynamic topography.