Characterisation of Heterotrophic Microorganisms Isolated form the "Grotta Azzura" of Cape Palinuro (Salerno, Italy)

Abstract. Hydrothermal vent ecosystems have been extensively investigated during the last 20 years; shallow water hot springs (typically found below 50 m depth) have also been studied, and from these ecosystems many thermophilic and hyperthermophilic organisms were isolated and described.
The submarine caves of Cape Palinuro were discovered long ago, but only during the last decades were geological and biological investigations carried out, yielding a large number of reports on this fascinating environment. During the last two years, several samples of water, mud, and/or bacterial mat were collected within the "Grotta Azzurra", and enrichment experiments were performed using peptone, starch, glucose or pullulan as main organic nutrients. Many heterotrophic strains were isolated and most of them grew optimally between 37 and 43 ° C with the addition of 0-2 % NaCl. Growth was usually observed between 10 and 50 ° C the range of growth pH was 4 to 9, and NaCl concentrations up to 10–12 % were tolerated in most cases.
The analysis of 16S rDNA performed with the most representative isolates showed a close phylogenetic relationship with the genera Bacillus, Vibrio, Citrobacter and Escherichia. Moreover, an isolate showing morphological and physiological similarities with the genus Enterococcus was characterised and taxonomically described based on the 16S rDNA sequence.     

Temporal Variations in the Dissolved Nutrient Stocks in the Surface Water of the Western North Atlantic Ocean

Changes in patterns of undetectability and molar ratios of dissolved nutrients in the euphotic zone of the oligotrophic western North Atlantic Ocean were investigated utilizing the Bermuda Atlantic Time-series Study (BATS) data set of the US Joint Global Ocean Flux Study (JGOFS). Our aim was to examine the temporal dynamics of nutrient stocks over a decade (1989∼1998) and to gain insight into the interactions between the different biotic and abiotic factors underlying BATS. Patterns of nutrient undetectability clearly revealed the depleted nature of the nutrients in surface water at the BATS location, particularly phosphorous. The N:P ratio was consistently far above the nominal Redfield ratio (mean, 38.5) but was significantly lower during the 1993∼1994 period (22.1). Over the same period the proportion of samples depleted in N only increased while the proportion of samples depleted in P only decreased. This indicates an overall reduction of N relative to P in the surface water at BATS during the 1993∼1994 period, the reasons for this anomaly, though, are not clear. The correlation analysis between the biotic and abiotic variables at BATS has indicated some interesting relationships that can help understand some of the parameters affecting nutrient stocks in the euphotic zone and their consequent impacts on marine biota. Although nutrient stocks in the oligotrophic environment are limited, they might be subject to interannual variation that may become anomalous in some cases. These variations might underlay significant feedback mechanisms by affecting marine productivity, the prime factor controlling the sequestration of atmospheric CO₂ by the oceans. This revised version was published online in July 2006 with corrections to the Cover Date.     

N2 fixation variability in the oligotrophic Sulu Sea, western equatorial Pacific region over the past 83 kyr

N₂ fixation is an important biological process that adds new nitrogen to oceans and plays a key role in modulating the oceanic nitrate inventory. However, it is not known how, when, and where N₂ fixation rates have varied in response to past climate changes. This study presents a new record of nitrogen isotopic composition (δ¹⁵N) over the last 83 kyr from a sediment core (KH02-4 SUP8) taken in the Sulu Sea in the western equatorial Pacific region; data allow the N₂ fixation variability in the sea to be reconstructed. Sediments, sinking, and suspended particulate organic matter (POM) all have lighter isotopic values compared to the δ¹⁵N values of substrate nitrate (av. 5.8‰) in North Pacific Intermediate Water. These lighter δ¹⁵N values are regarded as reflecting N₂ fixation in the Sulu Sea surface water. A δ¹⁵N mass balance model shows that N₂ fixation rates were significantly enhanced during 54–34 kyr in MIS-3 and MIS-2. It has been speculated that higher interglacial denitrification rates in the Arabian Sea and the eastern tropical Pacific would have markedly decreased the global oceanic N inventory and contributed to the increase in N₂ fixation in oligotrophic regions, but such a model was not revealed by our study. It is possible that changes in N₂ fixation rates in the Sulu Sea were regional response, and accumulation of phosphate in the surface waters due to enhanced monsoon-driven mixing is thought to have stimulated enhancements of N₂ fixation during MIS-3 and MIS-2.     

Precipitation of authigenic uranium in suboxic continental margin sediments from the Okinawa Trough

Concentrations of U and Th isotopes in Okinawa Trough and East China Sea sediment cores were determined by isotope dilution inductively coupled plasma-mass spectrometry (ID-ICP-MS) to investigate the behavior of redox sensitive uranium in suboxic hemipelagic sediments and determine their significance in oceanic uranium balance. ²³⁸U concentrations and ²³⁸U/²³²Th activity ratios in the East China Sea sediments showed no remarkable variation with depth. However, ²³⁸U and ²³⁸U/²³²Th ratios in the Okinawa Trough sediments were low in the surface oxidizing layer but increased where the suboxic condition was encountered. The distribution profiles of ²³⁰Th and ²³²Th concentrations were relatively constant with depth in both the Okinawa Trough and East China Sea sediment cores. These results suggested that there has been post-depositional precipitation of authigenic uranium within the suboxic Okinawa Trough sediment column. The post-depositional precipitation rates of authigenic uranium were estimated to be 47 ± 5 to >62 ± 8 ng cm⁻² yr⁻¹; these rates were comparable to those previously reported for several anoxic sediments. A mechanism controlling precipitation of uranium may be the downward diffusion of uranium U(VI), reduction to U(IV) and finally precipitation onto the solid phase. The accumulation rate of uranium for the Okinawa Trough sediments was approximately eight times higher than the world average rate reported for suboxic sediments. This removal of uranium in the oceanic budget increases the importance of the suboxic sediment sink.     

Volume transport and distribution of deep circulation at 165°W in the North Pacific

We conducted full-depth hydrographic observations between 8°50′ and 44°30′N at 165°W in 2003 and analyzed the data together with those from the World Ocean Circulation Experiment and the World Ocean Database, clarifying the water characteristics and deep circulation in the Central and Northeast Pacific Basins. The deep-water characteristics at depths greater than approximately 2000 dbar at 165°W differ among three regions demarcated by the Hawaiian Ridge at around 24°N and the Mendocino Fracture Zone at 37°N: the southern region (10–24°N), central region (24–37°N), and northern region (north of 37°N). Deep water at temperatures below 1.15 °C and depths greater than 4000 dbar is highly stratified in the southern region, weakly stratified in the central region, and largely uniform in the northern region. Among the three regions, near-bottom water immediately east of Clarion Passage in the southern region is coldest (θ<0.90 °C), most saline (S>34.70), highest in dissolved oxygen (O₂>4.2 ml l^?1), and lowest in silica (Si<135 μmol kg^?1). These characteristics of the deep water reflect transport of Lower Circumpolar Deep Water (LCDW) due to a branch current south of the Wake–Necker Ridge that is separated from the eastern branch current of the deep circulation immediately north of 10°N in the Central Pacific Basin. The branch current south of the Wake–Necker Ridge carries LCDW of θ<1.05 °C with a volume transport of 3.7 Sv (1 Sv=10⁶ m³ s^?1) into the Northeast Pacific Basin through Horizon and Clarion Passages, mainly through the latter (～3.1 Sv). A small amount of the LCDW flows northward at the western boundary of the Northeast Pacific Basin, joins the branch of deep circulation from the Main Gap of the Emperor Seamounts Chain, and forms an eastward current along the Mendocino Fracture Zone with volume transport of nearly 1 Sv. If this volume transport is typical, a major portion of the LCDW (～3 Sv) carried by the branch current south of the Wake–Necker and Hawaiian Ridges may spread in the southern part of the Northeast Pacific Basin. In the northern region at 165°W, silica maxima are found near the bottom and at 2200 dbar; the minimum between the double maxima occurs at a depth of approximately 4000 dbar (θ～1.15 °C). The geostrophic current north of 39°N in the upper deep layer between 1.15 and 2.2 °C, with reference to the 1.15 °C isotherm, has a westward volume transport of 1.6 Sv at 39–44°30′N, carrying silica-rich North Pacific Deep Water from the northeastern region of the Northeast Pacific Basin to the Northwest Pacific Basin.     

Pixel-based and object-based classifications using high- and medium-spatial-resolution imageries in the urban and suburban landscapes

With the increasing availability of high-spatial-resolution remote sensing imageries and with the observed limitations of pixel-based techniques, the development and testing of geographic object-based image analysis (GEOBIA) techniques for image classification have become one of the main research areas in geospatial science. This paper examines and compares the classification performance of a pixel-based method and an object-based method as applied to high- (QuickBird satellite image) and medium- (Landsat TM image) spatial-resolution imageries in the context of urban and suburban landscapes. For the pixel-based classification, the maximum-likelihood supervised classification approach was employed. And for the object-based classification, the pixel-based classified maps were integrated with a set of image segments produced using various calibrations. The results show evidence that the object-based method can produce classifications that are more accurate for both high- and medium-spatial- resolution imageries in the context of urban and suburban landscapes.     

Wind-Tunnel and Numerical Simulations of the Coastal Thermal Internal Boundary Layer

Wind-tunnel experiments in a thermally stratified wind tunnel and direct numerical simulations were performed to simulate the thermal internal boundary layer (TIBL) that developed over a coastal area in a sea-breeze flow. The results of the simulations were analyzed to investigate turbulence structure in the TIBL. To study the effects of the atmospheric stability over the sea on the TIBL, two vertical profiles of temperature were created in the upstream portion of the wind-tunnel experiment and the direct numerical simulation. Turbulence statistics of the TIBL changed significantly according to the temperature profile over the sea, indicating that the stability of the flow over the sea has a significant effect on the structure and turbulence characteristics of the TIBL. Furthermore, the TIBL heights were estimated from the vertical profiles of the local Richardson number. The estimated TIBL heights agreed with those predicted by a pre-existing relation, suggesting that both the wind-tunnel experiment and the direct numerical simulation accurately reproduced the growth of the TIBL.     

Recovery of surface albedo and plant cover after wildfire in a Picea mariana forest in interior Alaska

Albedo influences vegetation structure, permafrost thawing, etc., in particular, after wildfires in Picea mariana forests in Alaska, USA, while albedo changes with plant succession. To understand interactions between albedo and ecosystem recovery after wildfire, surface albedo was measured in the spring and summer of 2005 at Poker Flat, interior Alaska, where P. mariana forest was dominant. The ground surface was mostly covered with Sphagnum moss before the 2004 wildfire, and was variously burned by the fire. The measured wavelengths ranged from 0.3 to 3.0 μm. We measured four independent variables, incidence, plant cover on the forest floor, cover of burned ground surface, canopy openness and incidence, to examine the determinants on surface albedo. Multiple regression analysis showed that total plant cover positively and mostly determines albedo, indicating that plant recovery is prerequisite to return high albedo. When the ground surface was damaged by fire, changes in albedo were mostly derived from decrease in reflectance wavelengths between 0.7 and 1.4 μm. The fluctuations of reflectance wavelengths did not differ greatly between damaged-moss and burned surfaces. We must mention the dynamics of Sphagnum to understand various environmental changes including surface albedo.     

Nitrogen as the carrier gas for helium emission along an active fault in NW Taiwan

Variations of He gas concentration are widely applied in studies devoted to the location of faults and to monitor seismic activities. Up to now, its migration mechanism in soil is not fully understood. A systematic soil gas survey across an active fault in NW Taiwan provides the opportunity to closely examine the mechanism of He migration in the fault zone. Significant spatial and temporal correlations observed between soil N₂ and He gas support the hypothesis that N₂ is the probable carrier gas for He emission in the studied area. Based on N₂/Ar ratios and N₂ isotopic results, the excess soil N₂ in this study is considered to be largely derived from ancient atmospheric air which was dissolved in groundwater. Furthermore, observations rule out the possibility of CO₂ being the dominant carrier gas for He in the studied area based on the C and He isotopic compositions and the relationship between concentrations of these gases. At least two soil gas sources, A and B, can be identified in the studied area. Source A is an abiogenic gas source characterized by excess N₂ and He, and very low O₂ and CO₂ content. Source B, on the other hand, is a mixture of biogenic gas and atmospheric air. The development of the fault system is an important factor affecting the degree of mixture between sources A and B. Therefore, variations of soil gas composition, in particular those derived from source A, could be a useful proxy for tracing faults in the area.