Atmospherically-promoted photosynthetic activity in a well-mixed ecosystem: Significance of wet deposition events of nitrogen compounds

Wet atmospheric deposition of dissolved N, P and Si species is studied in well-mixed coastal ecosystem to evaluate its potential to stimulate photosynthetic activities in nutrient-depleted conditions. Our results show that, during spring, seawater is greatly depleted in major nutrients: Dissolved Inorganic Nitrogen (DIN), Dissolved Inorganic Phosphorus (DIP) and Silicic acid (Si), in parallel with an increase of phytoplanktonic biomass. In spring (March–May) and summer (June–September), wet atmospheric deposition is the predominant source (>60%, relative to riverine contribution) for nitrates and ammonium inputs to this N-limited coastal ecosystem. During winter (October–February), riverine inputs of DIN predominate (>80%) and are annually the most important source of DIP (>90%). This situation allows us to calculate the possibility for a significant contribution to primary production in May 2003, from atmospheric deposition (total input for DIN ≈300 kg km⁻² month⁻¹). Based on usual Redfield ratios and assuming that all of the atmospheric-derived N (AD-N) in rainwater is bioavailable for phytoplankton growth, we can estimate new production due to AD-N of 950 mg C m⁻² month⁻¹, during this period of depletion in the water column. During the same episode (May 2003), photosynthetic activity rate, considered as gross primary production, was estimated to approximately 30 300 mg C m⁻² month⁻¹. Calculation indicates that new photosynthetic activity due to wet atmospheric inputs of nitrogen could be up to 3%.     

Turbidity characterizes the reproduction areas of pikeperch (Sander lucioperca (L.)) in the northern Baltic Sea

The pikeperch (Sander lucioperca (L.)) is an economically important fish species occurring in the fresh and brackish waters of Europe. To evaluate the distribution and extent of the reproduction areas in the northern Baltic Sea, a field survey was carried out in two separate coastal areas. Presence/absence data were used to develop a geographic information system (GIS)-based predictive spatial distribution model, where high resolution raster maps of the focal environmental variables and a logistic regression equation were used to predict the probability of larval occurrence. The results indicated that the pikeperch reproduction areas are located in the innermost archipelago zone where high water turbidity best explained their presence. Turbidity was related to several other variables such as fetch and depth. Contrary to our preliminary hypothesis, surface water temperatures measured during the survey had no significant effect in the model due to the low spatial variation in the measured values. Since turbidity is possible to determine by remote sensing methods, the probability maps can be cost-effectively extended to more extensive coastal areas with proper validation.     

Factors to consider in evaluating the management and conservation effectiveness of a whale sanctuary to protect and conserve the North Atlantic right whale (Eubalaena glacialis)

This paper examines key factors used in protecting the migratory North Atlantic right whale within the context of a marine protected area (MPA) system, using the Grand Manan Whale Conservation Area, in New Brunswick Canada, as a case study example. Designated as a conservation area in 1993, before the Oceans Act came into effect, the Grand Manan conservation area currently does not form part of the Canadian network of MPAs. Given the possibility that MPA designation may occur, the paper examines factors that should be considered in meeting International Union for Conservation of Nature (IUCN) MPA design criteria and IUCN evaluation model requirements. An MPA evaluation framework based on an IUCN evaluation model (Hockings et al., 2000 [1]) is designed to assess the effectiveness of an MPA in protecting a migratory right whale. Case study results indicate that current management and research activities for the Grand Manan conservation area address most governance, biophysical and socio-economic issues under an IUCN evaluation framework. On a site basis, it is recommended that the Grand Manan conservation area be designated as a component of the Canadian network of MPAs and that regulations be developed and implemented under the Species at Risk Act to clearly define activities considered damaging or destructive to right whale critical habitat. Recommendations also suggest the preparation of a combined site management-action plan for the Grand Manan conservation area indicating how activities specified in North Atlantic Right Whale Recovery Strategy will be implemented locally. On a regional and international basis, recommendations call for an internationally coordinated and integrated approach to right whale protection within the context of a network of designated critical habitat areas. Recommended activities include: continued Canadian participation in cross-border research and actions to mitigate threats to the right whales over their migratory range; development of a regional right whale management and monitoring strategy; and designation of additional critical habitats in national/international waters. It is further recommended that the evaluation framework developed by this paper be used as a model in assessing the conservation and management effectiveness of MPAs protecting other migratory marine species.     

Impact of mega-scale sand extraction on tidal dynamics in semi-enclosed basins: An idealized model study with application to the Southern North Sea

Long-term considerations of repeated and increasing sand extraction on the Netherlands Continental Shelf (North Sea) may lead to the creation of a mega-scale extraction trench in front of the Dutch coast (length hundreds of km, width over 10 km, depth several m). We investigate the impact of such a huge topographic intervention on tidal dynamics, which is a key aspect in hydrodynamics, and indirectly also affecting morphodynamics and ecology.     

Two phase modal analysis of nonlinear sloshing in a rectangular container

Sloshing, or liquid free surface oscillation, in containers has many important applications in a variety of engineering fields. The modal method can be used to solve linear sloshing problems and is the most efficient reduced order method that has been used during the previous decade. In the present article, the modal method is used to solve a nonlinear sloshing problem. The method is based on a potential flow solution that implements a two-phase analysis on sloshing in a rectangular container. According to this method, the solution to the mass conservation equation, with a nonpenetration condition at the tank walls, results in velocity potential expansion; this is similar to the mode shapes used in modal method. The kinematic and dynamic boundary conditions create a set of two-space-dimensional differential equations with respect to time. The numerical solution of this set of differential equations, in the time domain, predicts the time response of interfacial oscillations. Modal method solutions for the time response of container sloshing due to lateral harmonic oscillations show a good agreement with experimental and numerical results reported in the literature.     

Assessment of dissolved nutrients dispersal derived from offshore fish-farm using nitrogen stable isotope ratios (δ15N) in macroalgal bioassays

In this study, the dispersal of wastes from offshore fish farms was evaluated by analyzing nitrogen stable isotope ratios (δ¹⁵N) in macroalgae incubated in the water column at sites located at an increasing distance from the fish cages. Bioassays were performed at three fish farms situated in separate localities with different nutritional conditions (Canary Islands, Murcia and Catalonia) and varying in size, species of fish reared and annual production. Macroalgal bioassays were carried out in two different directions (DI and DII) and they were replicated at each distance in order to evaluate the effect of small-scale variability on the spatial extent of fish farm wastes. The results obtained with δ¹⁵N contribute to a better understanding of the application of nitrogen stable isotopes ratios in macroalgae as an effective bioindicator for tracing the dispersion of offshore fish farm wastes, and demonstrate that fish farm wastes can be traced even over distances of some km from the pollution source. In the Canary Islands, the maximum distance obtained for detection of fish farm wastes was between 450 and 700 m. Of the three installations studied, Murcia presented the greatest distance for detection of fish farm waste influence, ranging from between 1550 and 2450 m, whilst in Catalonia this distance was less than 120 m. In Catalonia, the results were masked by the influence of other sources of nitrogen, and thus fish farm wastes were detected at more reduced distances than expected. These results confirm that fish farm wastes can be traced using the nitrogen stable isotope ratios of macroalgae and that this method can also be useful for identifying areas of potential risk to some sensitive ecosystems, and as an early signal that changes in the community structure might occur.     

A gridded sea surface salinity data set for the tropical Pacific with sample applications (1950–2008)

We present a gridded data set of Sea Surface Salinity (SSS) for the tropical Pacific (120°E–70°W; 30°N–30°S), with a grid resolution of 1° longitude, 1° latitude and 1 month, from 1950 to 2008. The product, together with its associated error field, is derived from an objective analysis of about 10 million validated SSS records, with most of the data originating from Voluntary Observing Ships, TAO/TRITON moorings and Argo profilers (during the most recent period). We expect this product to benefit studies in oceanography, meteorology and paleoceanography. As examples of applications, we analyse: (a) the seasonal and ENSO (El Niño Southern Oscillation) modes of observed SSS variability, (b) the ability of 23 coupled models used in the Intergovernmental Panel for Climate Change 4th Assessment Report (IPCC AR4) to simulate the mean SSS and these two time varying modes, and (c) the usefulness of the SSS product and of its associated error field in calibrating and validating the paleo-salinity time series. We anticipate improvements and regular updates to our product, as more SSS data become available from in situ networks and from the ongoing and near-future satellite-derived observations by SMOS (Soil Moisture and Ocean Salinity) and Aquarius.     

Corrections to ocean surface forcing in the California Current System using 4D variational data assimilation

The option for surface forcing correction, recently developed in the 4D-variational (4DVAR) data assimilation systems of the Regional Ocean Model System (ROMS), is presented. Assimilation of remotely-sensed (satellite sea surface height anomaly and sea surface temperature) and in situ (from mechanical and expendable bathythermographs, Argo floats and CTD profiles) oceanic observations has been applied in a realistic, high resolution configuration of the California Current System (CCS) to sequentially correct model initial conditions and surface forcing, using the Incremental Strong constraint version of ROMS-4DVAR (ROMS-IS4DVAR). Results from both twin and real data experiments are presented where it is demonstrated that ROMS-IS4DVAR always reduces the difference between the model and the observations that are assimilated. However, without corrections to the surface forcing, the assimilation of surface data can degrade the temperature structure at depth. When using surface forcing adjustment in ROMS-IS4DVAR the system does not degrade the temperature structure at depth, because differences between the model and surface observations can be reduced through corrections to surface forcing rather than to temperature at depth. However, corrections to surface forcing can generate abnormal spatial and temporal variability in the structure of the wind stress or surface heat flux fields if not properly constrained. This behavior can be partially controlled via the choice of decorrelation length scales that are assumed for the forcing errors. Abnormal forcing corrections may also arise due to the effects of model error which are not accounted for in IS4DVAR. In particular, data assimilation tends to weaken the alongshore wind stress in an attempt to reduce the rate of coastal upwelling, which seems to be too strong due to other sources of error. However, corrections to wind stress and surface heat flux improve systematically the ocean state analyses. Trends in the correction of surface heat fluxes indicate that, given the ocean model used and its potential limitations, the heat flux data from the Coupled Ocean–Atmosphere Mesoscale Prediction System (COAMPS) used to impose surface conditions in the model are generally too low except in spring-summer, in the upwelling region, where they are too high. Comparisons with independent data provide confidence in the resulting forecast ocean circulation on timescales ～14 days, with less than 1.5 °C, 0.3 psu, and 9 cm RMS error in temperature, salinity and sea surface height anomaly, respectively, compared to observations.     

The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems: Part II - Performance and application to the California Current System

The Regional Ocean Modeling System (ROMS) 4-dimensional variational (4D-Var) data assimilation systems have been systematically applied to the mesoscale circulation environment of the California Current to demonstrate the performance and practical utility of the various components of ROMS 4D-Var. In particular, we present a comparison of three approaches to 4D-Var, namely: the primal formulation of the incremental strong constraint approach; the dual formulation “physical-space statistical analysis system”; and the dual formulation indirect representer approach. In agreement with theoretical considerations all three approaches converge to the same ocean circulation estimate when using the same observations and prior information. However, the rate of convergence of the dual formulation was found to be inferior to that of the primal formulation. Other aspects of the 4D-Var performance that relate to the use of multiple outer-loops, preconditioning, and the weak constraint are also explored. A systematic evaluation of the impact of the various components of the 4D-Var control vector (i.e. the initial conditions, surface forcing and open boundary conditions) is also presented. It is shown that correcting for uncertainties in the model initial conditions exerts the largest influence on the ability of the model to fit the available observations. Various important diagnostics of 4D-Var are also examined, including estimates of the posterior error, the information content of the observation array, and innovation-based consistency checks on the prior error assumptions. Using these diagnostic tools, we find that more than 90% of the observations assimilated into the model provide redundant information. This is a symptom of the large percentage of satellite data that are used and to some extent the nature of the data processing employed. This is the second in a series of three papers describing the ROMS 4D-Var systems.     

Quantifying the influence of channel sinuosity on the depositional mechanics of channelized turbidity currents: A laboratory study

Here we present results from a suite of laboratory experiments that highlight the influence of channel sinuosity on the depositional mechanics of channelized turbidity currents. We released turbidity currents into three channels in an experimental basin filled with water and monitored current properties and the evolution of topography via sedimentation. The three channels were similar in cross-sectional geometry but varied in sinuosity. Results from these experiments are used to constrain the run-up of channelized turbidity currents on the outer banks of moderate to high curvature channel bends. We find that a current is unlikely to remain contained within a channel when the kinetic energy of a flow exceeds the potential energy associated with an elevation gain equal to the channel relief; setting an effective upper limit for current velocity. Next we show that flow through bends induces a vertical mixing that redistributes suspended sediment back into the interiors of depositional turbidity currents. This mixing counteracts the natural tendency for suspended sediment concentration and grain size to stratify vertically, thereby reducing the rate at which sediment is lost from a current via deposition. Finally, the laboratory experiments suggest that turbidity currents might commonly separate from channel sidewalls along the inner banks of bends. In some cases, sedimentation rates and patterns within the resulting separation zones are sufficient to construct bar forms that are attached to the channel sidewalls and represent an important mechanism of submarine channel filling. These bar forms have inclined strata that might be mistaken for the deposits of point bars and internal levees, even though the formation mechanism and its implications to channel history are different.