Remotely sensed agricultural modification improves prediction of suitable habitat for a threatened lizard

The geographical distribution of a species is limited by factors such as climate, resources, disturbances and species interactions. Environmental niche models attempt to encapsulate these limits and represent them spatially but do not always incorporate disturbance factors. We constructed MaxEnt models derived from a remotely sensed vegetation classification with, and without, an agricultural modification variable. Including agricultural modification improved model performance and led to more sites with native vegetation and fewer sites with exotic or degraded native vegetation being predicted suitable for A. parapulchella. Analysis of a relatively well-surveyed sub-area indicated that including agricultural modification led to slightly higher omission rates but markedly fewer likely false positives. Expert assessment of the model based on mapped habitat also suggested that including agricultural modification improved predictions. We estimate that agricultural modification has led to the destruction or decline of approximately 30–35% of the most suitable habitat in the sub-area studied and approximately 20–25% of suitable habitat across the entire study area, located in the Australian Capital Territory, Australia. Environmental niche models for a range of species, particularly habitat specialists, are likely to benefit from incorporating agricultural modification. Our findings are therefore relevant to threatened species planning and management, particularly at finer spatial scales.     

Isotopes in the Hueco Bolson aquifer, Texas (USA) and Chihuahua (Mexico): local and general implications for recharge sources in alluvial basins

Stable isotope data for the Hueco Bolson aquifer (Texas, USA and Chihuahua, Mexico) distinguish four water types. Two types relate to recharge from the Rio Grande: pre-dam (pre-1916) river water with oxygen-18 and deuterium (δ¹⁸O, δD, ‰) from (?11.9, ?90) to (?10.1, ?82), contrasts with present-day river water (?8.5, ?74) to (?5.3, ?56). Pre-dam water is found beneath the Rio Grande floodplain and Ciudad Juárez, and is mixed with post-dam river water beneath the floodplain. Two other types relate to recharge of local precipitation; evidence of temporal change of precipitation isotopes is present in both types. Recharge from the Franklin and Organ Mountains plots between (?10.9, ?76) and (?8.5, ?60) on the global meteoric water line (GMWL), and is found along the western side of the Hueco Bolson, north of the Rio Grande. Recharge from the Diablo Plateau plots on an evaporation trend originating on the GMWL near (?8.5, ?58). This water is found in the southeastern Hueco Bolson, north of the river; evaporation may be related to slow recharge through fine-grained sediment. Pre-dam water, recognizable by isotope composition, provides information on groundwater residence times in this and other dammed river basins.     

Nutrient-Replete Benthic Microalgae as a Source of Dissolved Organic Carbon to Coastal Waters

Dissolved organic carbon (DOC) flux dynamics were examined in the context of other biogeochemical cycles in intertidal sediments inhabited by benthic microalgae. In August 2003, gross oxygenic photosynthetic (GOP) rates, oxygen penetration depths, and benthic flux rates were quantified at seven sites along the Duplin River, GA, USA. Sediments contained abundant benthic microalgal (BMA) biomass with a maximum chlorophyll a concentration of 201 mg chl a m^?2. Oxygen microelectrodes were used to determine GOP rates and O₂ penetration depth, which were tightly correlated with light intensity. Baseline and ¹⁵N-nitrate amended benthic flux core incubations were employed to quantify benthic fluxes and to investigate the impact of BMA on sediment water exchange under nitrogen (N)-limited and N-replete conditions. Unamended sediments exhibited tight coupling between GOP and respiration and served as a sink for water column dissolved inorganic nitrogen (DIN) and a source of silicate and dissolved inorganic carbon (DIC). The BMA response to the N addition indicated sequential nutrient limitation, with N limitation followed by silicate limitation. In diel (light–dark) incubations, biological assimilation accounted for 83% to 150% of the nitrate uptake, while denitrification (DNF) and dissimilatory nitrate reduction to ammonium (DNRA) accounted for <7%; in contrast, under dark conditions, DNF and DNRA accounted for >40% of the NO₃ ^? uptake. The N addition shifted the metabolic status of the sediments from a balance of autotrophy and heterotrophy to net autotrophy under diel conditions, and the sediments served as a sink for water column DIN, silicate, and DIC but became a source of DOC, suggesting that the increased BMA production was decoupled from sediment bacterial consumption of DOC.     

Characterization of uraninite nanoparticles produced by Shewanella oneidensis MR-1

The reduction of uranium(VI) by Shewanella oneidensis MR-1 was studied to examine the effects of bioreduction kinetics and background electrolyte on the physical properties and reactivity to re-oxidation of the biogenic uraninite, UO_2(s). Bioreduction experiments were conducted with uranyl acetate as the electron acceptor and sodium lactate as the electron donor under resting cell conditions in a 30 mM NaHCO₃ buffer, and in a PIPES-buffered artificial groundwater (PBAGW). MR-1 was cultured in batch mode in a defined minimal medium with a specified air-to-medium volume ratio such that electron acceptor (O₂) limiting conditions were reached just when cells were harvested for subsequent experiments. The rate of U(VI) bioreduction was manipulated by varying the cell density and the incubation temperature (1.0 × 10⁸ cell ml⁻¹ at 20 °C or 2.0 × 10⁸ cell ml⁻¹ at 37 °C) to generate U(IV) solids at “fast” and “slow” rates in the two different buffers. The presence of Ca in PBAGW buffer altered U(VI) speciation and solubility, and significantly decreased U(VI) bioreduction kinetics. High resolution transmission electron microscopy was used to measure uraninite particle size distributions produced under the four different conditions. The most common primary particle size was 2.9-3.0 nm regardless of U(VI) bioreduction rate or background electrolyte. Extended X-ray absorption fine-structure spectroscopy was also used to estimate uraninite particle size and was consistent with TEM results. The reactivity of the biogenic uraninite products with dissolved oxygen was tested, and neither U(VI) bioreduction rate nor background electrolyte had any statistical effect on oxidation rates. With MR-1, uraninite particle size was not controlled by the bioreduction rate of U(VI) or the background electrolyte. These results for MR-1, where U(VI) bioreduction rate had no discernible effect on uraninite particle size or oxidation rate, contrast with our recent research with Shewanella putrefaciens CN32, where U(VI) bioreduction rate strongly influenced both uraninite particle size and oxidation rate. These two studies with Shewanella species can be viewed as consistent if one assumes that particle size controls oxidation rates, so the similar uraninite particle sizes produced by MR-1 regardless of U(VI) bioreduction rate would result in similar oxidation rates. Factors that might explain why U(VI) bioreduction rate was an important control on uraninite particle size for CN32 but not for MR-1 are discussed.     

Plagioclase in the Skaergaard intrusion. Part 1: Core and rim compositions in the layered series

The anorthite content of plagioclase grains (X_An) in 12 rocks from the layered series of the Skaergaard intrusion has been studied by electron microprobe (typically ∼30 core and ∼70 rim analyses per thin section). Mean core compositions vary continuously from An₆₆ at the base of the layered series (LZa) to An_32–30 at the top. On the other hand, crystal rims are of approximately constant composition (An_{50 ± 1}) from the LZa to the lower Middle Zone (MZ). Above the MZ, core and rim compositions generally overlap. Profiles across individual plagioclase grains from the lower zone show that most crystals have an external zone buffered at X_An ∼50 ± 1. The simplest explanation for these features is that during postcumulus crystallization in the lower zone, interstitial liquids passed through a density maximum. This interpretation is consistent with proposed liquid lines of descent that predict silica enrichment of the liquid associated with the appearance of cumulus magnetite.     

Flood basalts and metallogeny: The lithospheric mantle connection

Continental flood basalts, derived from mantle plumes that rise from the convecting mantle and possibly as deep as the core–mantle boundary, are major hosts for world-class Ni–Cu–PGE ore deposits. Each plume may have a complex history and heterogeneous composition. Therefore, some plumes may be predisposed to be favourable for large-scale Ni–PGE mineralisation (“fertile”).Geochemical data from 10 large igneous provinces (LIPs) have been collected from the literature to search for chemical signatures favourable for Ni–PGE mineralisation. The provinces include Deccan, Kerguelen, Ontong Java, Paraná, Ferrar, Karoo, Emeishan, Siberia, Midcontinent and Bushveld. Among these LIPs, Bushveld, Siberia, Midcontinent, Emei Mt and Karoo are “fertile”, hosting magmatic ore deposits or mineralisation of various type, size and grade. They most commonly intruded through, or on the edges of, Archaean–Paleoproterozoic cratonic blocks. In contrast, the “barren” LIPs have erupted through both continental and oceanic crustal terranes of various ages.Radiogenic isotopic signatures indicate that almost all parental LIP magmas are generated from deep-seated mantle plumes, and not from the more widespread depleted asthenospheric mantle source: this confirms generally accepted plume models. However, several important geochemical signatures of LIPs have been identified in this study that can discriminate between those that are “fertile” or “barren” in terms of their Ni–PGE potential.The fertile LIPs generally contain a relatively high proportion of primitive melts that are high in MgO and Ni, low in Al₂O₃ and Na₂O, and are highly enriched in most of the strongly incompatible elements such as K, P, Ba, Sr, Pb, Th, Nb, and LREE. They have relatively high Os contents (≥ 0.03 to 10 ppb) and low Re/Os (< 10). The fertile LIP basalts display trends of Sr–Nd–Pb isotopic variation intermediate between the depleted plume and an EM1-type mantle composition (and thus could represent a mixing of these two source types), and have elevated Ba/Th, Ba/Nb and K/Ti ratios. These elemental and isotopic signatures suggest that interaction between plume-related magmas and ancient cratonic lithospheric mantle with pre-existing Ni- and PGE-rich sulfide phases may have contributed significantly to the PGE and Ni budget of the fertile flood basalts and eventually to the mineralisation. This observation is consistent with the location of fertile LIPs adjacent to deep old lithospheric roots (as inferred from tectonic environment and also seen in global tomographic images) and has predictive implications for exploration models.Barren LIPs contain fewer high-MgO lavas. The barren LIP lavas in general have low Os contents (mostly ≤ 0.02 ppb) with high Re/Os (10–≥ 200). They show isotopic variations between plume and EM2 geochemical signatures and have high Rb/Ba ratios. These signatures may indicate involvement of deep recycled material in the mantle sources or crustal contamination for barren LIPs, but low degrees of interaction with old lithospheric-type roots.     

Magma sources and gold mineralisation in the Mount Leyshon and Tuckers Igneous Complexes, Queensland, Australia: U-Pb and Hf isotope evidence

In situ LAM-ICPMS U-Pb, Hf-isotope and trace-element analyses of zircon have been used to evaluate the relative contributions of juvenile mantle and crustal sources to the intrusive rocks of the mafic to intermediate, gold-poor Tuckers Igneous Complex (TIC), and the spatially and temporally related, felsic Mount Leyshon Igneous Complex (MLIC), which hosts a gold-rich porphyry system.

The TIC intrusions range in age from 304.2 ± 9.1 Ma to 288.5 ± 6.4 Ma, and the MLIC intrusions from 291.0 ± 4.8 Ma to 288 ± 6 Ma. Cross-cutting relationships define the intrusion sequence from oldest to youngest; Diorite, Monzodiorite, Mafic Granodiorite and Biotite Microgranite within the TIC; Early Dyke, Southern Porphyry and Late Dyke within the MLIC.

Zircons from the earliest rock type within each complex have a wide range in _Hf (5.2 to 14.8 for the TIC Diorite, 2.0 to 12.4 for the MLIC Early Dykes) suggesting the mixing of juvenile and crustal magmas. This interpretation is supported by trace-element data that show the presence of two distinct zircon populations in the MLIC Early Dyke. The later intrusive rocks have narrower ranges in _Hf (typically < 4 _Hf units) and trace-element patterns of zircon. This homogeneity suggests derivation from magmas produced by further mixing and fractional crystallisation of the TIC Diorite and the MLIC Early Dyke magmas respectively. A greater crustal contribution to the gold-rich MLIC is inferred from the range of median _Hf (3.2 to 4.5 for the MLIC, 5.4 to 8.7 for the TIC). We suggest that the MLIC was derived by melting of more felsic crustal rocks, and with less input from juvenile mantle, then the TIC; it was not derived by fractional crystallisation of an intermediate to mafic TIC-like magma. Modelling of Hf isotope data yields a mean model age of 1040 ± 10 Ma (at ¹⁷⁶Lu/¹⁷⁷Hf = 0.015) for the crustal component in both complexes.

Gold was precipitated in the MLIC Breccia during the emplacement of the Late Dykes. The isotopically homogenous nature of the Late Dykes suggests that no additional juvenile-mantle input was involved at the mineralisation stage. This supports a model in which gold and other metals were indigenous to the Late Dykes magma and were concentrated by magma differentiation and fluid-evolution processes.     

A Numerical Case Study of the Implications of Secondary Circulations to the Interpretation of Eddy-Covariance Measurements Over Small Lakes

The CASES-99 experimental data are used to analyze turbulence behaviour under a range of stable conditions using an adaptive method based on Hilbert spectral analysis. The characteristic scales of intrinsic mode functions vary between different stratifications. The second-order Hilbert marginal spectra display clear separation between fine-scale turbulence and large-scale motions. After removing the large-scale motions, the statistical characteristics of the reconstructed signals confirm the distinction of different stratifications in the fine-scale range. The correlation coefficient analyses reveal that the Hilbert spectral analysis method separates turbulence from large-scale motions in the stable boundary layer.