Development of two novel CYP-antibodies and their use in a PCB exposure experiment with Mytilus edulis

In an attempt to learn more about the cytochrome P450 (CYP) system of mussels, we used protein databases and alignment software to extract highly conserved CYP sequences. From these alignments synthetic peptides were produced and used for rabbit immunisation, which yielded polyclonal antibodies against the CYP families 2 and 4. The antibodies were evaluated with Western Blot and ELISA assays, using digestive gland microsomal samples from the mussel Mytilus edulis. Western Blots revealed immunoreactions for both antibodies. The anti-CYP2 sequence rendered one major immunopositive protein of approximately 49 kDa size, and weak signals for proteins of approximately 41 and 56 kDa size. The anti-CYP4 sequence rendered two major bands of approximately 56 and 59 kDa size, and also a weak immunoreaction with a protein of approximately 43 kDa size. ELISA rendered only weak signals even with a 1:50 dilution of IgG-purified serum. A 10-day exposure to Aroclor 1254 did not appear to affect any of the immunopositive proteins, while total PCBs in soft bodies increased from 14-40 ng/g DW in controls to 373-638 ng/g DW in exposed mussels.     

Estimation of Sea Ice Thickness from SARAL/AltiKa in Drifting Orbit Phase

Abstract

Intra and inter-annual variations in the sea ice thickness are highly sensitive indicators of climatic variations undergoing in the earth’s atmosphere and oceans. This paper describes the method of estimating sea ice thickness using radar waveforms data acquired by SARAL/Altika mission during its drifting orbit phase from July 2016 onwards yielding spatially dense data coverage. Based on statistical analysis of return echoes, classification of the surface has been carried out in three different types, viz. floe, lead and mixed. Time delay correction methods were suitably selected and implemented to make corrections in altimetric range measurements and thereby freeboard. By assuming hydrostatic equilibrium, freeboard data were converted into sea ice thickness. Results show that sea ice thickness varies from 4 to 5?m near ice shelves and 1 to 2.5?m in the marginal sea ice regions. Freeboard and sea ice thickness estimates were also validated using NASA’s Operation Ice Bridge (OIB) datasets. Freeboard measurements show very high correlation (0.97) having RMSE of 0.13. Overestimation of approximately 1–2?m observed in the sea ice thickness, which could be attributed to distance between AltiKa footprint and OIB locations. Moreover, sensitivity analysis shows that snow depth and snow density over sea ice play crucial role in the estimation of sea ice thickness.     

Distribution and transport of organic matter along a filament-eddy system in the Canaries – NW Africa coastal transition zone region

The distribution and transport of chlorophyll a (Chla), particulate (POC) and dissolved (DOC) organic carbon, and the respiratory ETS activity of the microplankton community were studied along a filament-eddy system located in the transition zone between the NW Africa upwelling and Canary Islands waters. Two independent filaments (F1 and F2) stemming from the coastal jet, between Cape Juby and Cape Bojador, merged about 100 km offshore, turning southward and onshore forced by the circulation of a recurrent oceanic cyclonic eddy. In general, the coastal upwelling waters presented higher Chla, but lower POC, DOC and ETS activity than filament waters. However, differences in organic carbon distribution and respiratory activity were observed among stations from the two filaments. The bio-chemical fields were strongly influenced by a complex sub-mesoscale hydrography resulting from the interaction of cyclonic and anticyclonic island eddies with the filaments. The combined F1 + F2 filament system transported 97.1 kg s⁻¹ of excess (non-refractory) total organic carbon (e-TOC), a value comparable to other published estimates from upwelling filaments in the NE Atlantic. About 90% of e-TOC was exported as DOC, since eddy re-circulation precluded the offshore transport of POC. Assuming that the calculated transport of e-TOC is representative of the annual average, the yearly offshore transport (3.1 x 10⁹ kg C) would represent about 25% of the upwelling primary production of the region of study.     

Artificial upwelling induced by ocean currents —Theory and experiment

A submerged apparatus, which consists of a buoy, several horizontal contraction and expansion tubes (Venturi-type tubes) and a long pipe, is expected to be used to pump the subsurface sea-water (200–300 meter depth) containing abundant nutrients to surface layer (50–100 m) by the dynamic of ocean currents. i.e. an artificial upwelling without energy cost. A preliminary experiment and analysis are undertaken and shows that the capacity of pumping the nutrient-rich sea-water is worth to build a pilot prototype model.     

Ridge development as revealed by sub-bottom profiles on the central New Jersey shelf

Closely-spaced 3.5 kHz seismic profiles were collected over the north-easterly trending ridge and swale system 50 km east-southeast of Atlantic City, New Jersey. They yield information on the Late Quaternary depositional history of the area, and on the origin of the ridge system. Four of the sub-bottom reflectors identified were sufficiently persistent to warrant investigation and interpretation. These reflectors, which have been cored, lithologically identified, and radiocarbon dated, are stratigraphically higher than the reflectors dealt with by the majority of previous studies. The upper three reflectors are definitely mid- and post-Wisconsin in age and present a record of the most recent glacial cycle. The upper three units associated with the observed reflectors appear to exert a pronounced influence on the bathymetry. The gently corrugated ridge system of Holocene sand is formed over the regionally flat-lying upper unit, an Early Holocene lagoonal silty clay. The characteristically flat, broad depressions of the area are floored by this lagoonal material. Locally, however, marine scour has cut through the silty clay into an underlying unit of unconsolidated fine Pleistocene sand. Several stages of trough development appear to be represented. After penetrating the lagoonal clay, troughs are initially narrow, but when incised through the sand into a lower, Pleistocene, silty-clay unit, the troughs become notably wider. As downcutting is inhibited by the lower clay, the upper clay is undercut as the trough widens in a fashion similar to a desert blowout.

The sub-bottom reflectors indicate that ridge development on the central shelf has involved aggradation as well as erosion. Some ridges seem to have grown by vertical and lateral accretion from small cores. The internal structure of other ridges suggests that they formed by the coalescence of several small ridges. Others appear to have undergone appreciable lateral migration.

The ridges appear to be in a state of continuing adjustment to the hydraulic regime of the deepening post-Pleistocene water column.     

Estimation of winds over the sea from land-based measurements

Simultaneous measurements of wind velocities at two different sites, one over the sea and the other over land, can differ substantially and therefore cannot be interchanged. In situations where the wind data at an offshore site are missing while simultaneous measurements from a land-based station exist, a linear mean-square estimation (LMSE) technique can be used to estimate the missing data. This technique relies on past wind data gathered simultaneously at the two locations, and it generates from the associated correlation a set of four transfer functions capable of predicting one data set from the other. In the present case, the LMSE technique is outlined briefly, and is then applied to construct seasonal transfer functions between a land-based station and two coastal/offshore sites in Kuwait. Comparisons between the actually observed wind characteristics and those predicted by the LMSE technique are favorable, and thus tend to confirm the applicability of the technique under appropriate conditions.     

Offshore permafrost and gas hydrate stability zone on the shelf of East Siberian Seas

Dynamics of the submarine permafrost regime, including distribution, thickness, and temporal evolution, was modeled for the Laptev and East Siberian Sea shelf zones. This work included simulation of the permafrost-related gas hydrate stability zone (GHSZ). Simulations were compared with field observations. Model sensitivity runs were performed using different boundary conditions, including a variety of geological conditions as well as two distinct geothermal heat flows (45 and 70 mW/m²). The heat flows used are typical for the coastal lowlands of the Laptev Sea and East Siberian Sea. Use of two different geological deposits, that is, unconsolidated Cainozoic strata and solid bedrock, resulted in the significantly different magnitudes of permafrost thickness, a result of their different physical and thermal properties. Both parameters, the thickness of the submarine permafrost on the shelf and the related development of the GHSZ, were simulated for the last four glacial-eustatic cycles (400,000 years). The results show that the most recently formed permafrost is continuous to the 60-m isobath; at the greater depths of the outer part of the shelf it changes to discontinuous and patchy permafrost. However, model results suggest that the entire Arctic shelf is underlain by relic permafrost in a state stable enough for gas hydrates. Permafrost, as well as the GHSZ, is currently storing probable significant greenhouse gas sources, especially methane that has formed by the decomposition of gas hydrates at greater depth. During climate cooling and associated marine regression, permafrost aggradation takes place due to the low temperatures and the direct exposure of the shelf to the atmosphere. Permafrost degradation takes place during climate warming and marine transgression. However, the temperature of transgressing seawater in contact with the former terrestrial permafrost landscape remains below zero, ranging from –0.5 to –1.8°C, meaning permafrost degradation does not immediately occur. The submerged permafrost degrades slowly, undergoing a transformation in form from ice bonded terrestrial permafrost to ice bearing submarine permafrost that does not possess a temperature gradient. Finally the thickness of ice bearing permafrost decreases from its lower boundary due to the geothermal heat flow. The modeling indicated several other features. There exists a time lag between extreme states in climatic forcing and associated extreme states of permafrost thickness. For example, permafrost continued to degrade for up to 10,000 years following a temperature decline had begun after a climate optimum. Another result showed that the dynamic of permafrost thickness and the variation of the GHSZ are similar but not identical. For example, it can be shown that in recent time permafrost degradation has taken place at the outer part of the shelf whereas the GHSZ is stable or even thickening.     

Non-linear model for the generation of baroclinic tides over extensive inhomogeneities of the seabed relief

A numerical model is developed for the generation of internal waves induced by a barotropic tidal wave travelling over large bottom features. Motion equations consider the non-linear terms, as well as the terms responsible for horizontal turbulent exchange. The fluid is assumed to be continuously stratified. In the framework of the developed model, a packet of short non-linear internal waves is shown to occur together with a long baroclinic tide. In the absence of non-linear terms in the equations of motion, the model data are qualitatively and quantitatively consistent with the data provided by known linear models.Translated by V. Puchkin.     

A densely sampled core and climate variable aliasing

Undersampled records are susceptible to aliasing, in which a high frequency appears incorrectly as a lower one. We study the sampling requirements in a core taken from Rockall Trough using bulk density, P-wave velocity, and magnetic susceptibility as measured on an automated system. At 2-cm spacing (approximately 33 years in this core), all variables show a characteristic red-noise behavior, but with a spectral slope that is sufficiently weak so that significant aliasing appears to be present. P-wave velocity shows the largest potential corruption, probably owing to the weaker spatial averaging present in the sensor. Approximately 50% of the apparent low-frequency energy is aliased in all variables at some frequencies in both quiet and active regions of the record. In this core, a sampling interval of 0.2 cm appears to be "safe" in both active and quiet portions of the core, aliasing little or no energy, except in the P-wave record. For cores of different duration, sampling interval, and measurement type, the considerations will be identical, the importance of the problem depending directly upon the shape of the overall spectrum describing the entire frequency (wavenumber) range of physical variability.