Long-term precipitation and stream discharge records at seven forested experimental watersheds along a latitudinal transect in Japan: Jozankei,Kamabuchi, Takaragawa,Tsukuba, Tatsunokuchi-yama,Kahoku and Sarukawa

This data note introduces a database of long-term daily total precipitation and stream discharge data for seven forested watersheds in Japan that have been continuously monitored by the Forestry and Forest Products Research Institute. Three of the watersheds started data collection in the 1930s. Forest cover across the sites ranges from cool to warm temperate regions with the latitude spanning from 31 to 44° N and annual precipitation ranging from 1200 to 3000 mm yr⁻¹. The effects of vegetation change via clearcutting, thinning and forest fire (among other stressors) on stream discharge can be analysed from the long-term observation sites. Moreover, this multi-site dataset allows for inter- and intra-site comparisons of annual water loss (difference of annual precipitation and stream discharge). These long-term datasets can provide comprehensive insights into the effects of climate change and other stressors on forested ecosystems, not only in Japan but across a spectrum of forest types, if combined with other long-term records from other forested watersheds across the world.     

Petrographic and mineralogical study of hydrothermal alteration of the Rokko Granite at Hakusui-kyo and Horai-kyo along the Arima-Takatsuki Tectonic Line in western Japan

Field, hand specimen, and microscopic investigations alongside X-ray diffraction analyses revealed four types of hydrothermal alteration (Type-A, -B, -C, and -D) based on the mode of occurrence of altered rocks and alteration mineral assemblage at Hakusui-kyo and Horai-kyo along the Arima-Takatsuki Tectonic Line (ATTL) in western Japan. Type-A alteration locally occurred as gray alteration halos with sulfide minerals. Type-B and -C alterations were confined to fault gouge veins and occurred as greenish-gray veins and brown veins, respectively. Type-C alteration crosscut Type-B alteration. These alterations were associated with a number of granitic fragments including cohesive breccia and micrographic facies. Type-D alteration occurred locally in brown sediments. Different mineralogical features in the four alterations are summarized as (Type-A) illite; (Type-B) chlorite; (Type-C) limonite (Fe³⁺ hydroxides and goethite) and calcite; and (Type-D) limonite. We propose that the alterations can be broadly divided into Paleocene hydrothermal alteration (Type-A) and post-Late Miocene hydrothermal alteration (Type-B, -C, and -D): Type-A alteration occurred at approximately 200 °C during hydrothermal activity after a granitic intrusion in Late Cretaceous; Type-B, -C and -D alterations occurred under hydrothermal activity accompanying deep fluids with repeated ascents invoked by the seismicity of the ATTL after the Late Miocene. The fluids may have been the “Arima-type thermal waters” (i.e., mixtures of convective groundwater and Na-Ca-Cl-HCO₃-type fluids). Type-B alteration occurred in fractures at depths where the temperature was ≥150 °C. Type-C alteration overprinted Type-B alteration as a result of mixing of new deep fluids and descending oxidized meteoric water near the surface. Fe³⁺ hydroxides and calcite precipitated from the fluids due to the oxidation of Fe²⁺ and the degassing of CO₂, respectively, at ambient to near-boiling temperatures. When the ascending fluids gushed out from the fractures, they generated Type-D alteration at the surface under similar temperature conditions due to the oxidation of Fe²⁺.     

Geology ‘far from the madding crowd’, along the northern border of Vietnam

To the north of Hanoi, about a day's drive by car, lies Ha Giang Province, the northernmost region of Vietnam. Ha Giang is remote from the hustle and bustle of daily life, and beyond its eponymous provincial capital towards the border with China, mountains rise quickly to Quan Ba, ‘Heaven's Gate’. The mountains form an uneven landscape of steep‐sided karst rising from deep river‐cut gorges and form a formidable barrier on the northern frontier of Vietnam. Beyond ‘Heaven's Gate’ lies the little travelled region of Dong Van, with its majestic mountains of Palaeozoic strata rising precipitously to the sky. Here, a century ago, the French geologists Henri Mansuy and Jacques Deprat documented early finds of fossils from lower Palaeozoic strata on the border with China.     

Seasonal variation of volatile organic iodine compounds in the water column of Funka Bay,Hokkaido, Japan

Volatile organic iodine compounds (VOIs) emitted from the ocean surface to the air play an important role in atmospheric chemistry. Shipboard observations were conducted in Funka Bay, Hokkaido, Japan, bimonthly or monthly from March 2012 to December 2014, to elucidate the seasonal variations of VOI concentrations in seawater and their sea-to-air iodine fluxes. The bay water exchanges with the open ocean water of the North Pacific twice a year (early spring and autumn). Vertical profiles of CH₂I₂, CH₂ClI, CH₃I, and C₂H₅I concentrations in the bay water were measured bimonthly or monthly within an identified water mass. The VOI concentrations began to increase after early April at the end of the diatom spring bloom, and represented substantial peaks in June or July. The temporal variation of the C₂H₅I profile, which showed a distinct peak in the bottom layer from April to July, was similar to the PO₄ ^3? variation profile. Correlation between C₂H₅I and PO₄ ^3? concentrations (r = 0.93) suggests that C₂H₅I production was associated with degradation of organic matter deposited on the bottom after the spring bloom. CH₂I₂ and CH₂ClI concentrations increased substantially in the surface and subsurface layers (0–60 m) in June or July resulted in a clear seasonal variation of the sea-to-air iodine flux of the VOIs (high in summer or autumn and low in spring).     

The paleobiogeographical significance of the Silurian and Devonian trilobites of Japan

Six major groups of trilobites from the Silurian and Devonian of Japan are evaluated for their paleobiogeographical signature. Silurian illaenids and scutelluids show four generic‐level and at least two species‐level links with the Australian segment of the Gondwana paleocontinent; encrinurids also indicate two generic‐level links with Australia and also the South China paleocontinent; whilst Devonian phacopids, and possibly proetids, suggest at least two generic‐level links with the North China paleocontinent. These different patterns may reflect the fragmentary biostratigraphical record of Japanese trilobites, but they also appear to reflect paleoenvironmental parameters associated with lithofacies, and paleoecology. Thus, Japanese assemblages of proetids and phacopids occurring in deep‐water clastic lithofacies have counterparts in similar settings in North China, and Japanese scutelluids and illaenids are strongly associated with shallow marine carbonate lithofacies that are similar to those of their occurrences in Australia. Japanese encrinurids occur in carbonate rocks indicative of shallow marine settings in the Kurosegawa Terrane, and they demonstrate a consistent paleobiogeographical affinity with Australia and South China. Larval ecology cannot be directly assessed for Japanese trilobite groups. However, proetids have consistently been shown to have planktonic protaspides, whereas illaenids, scutelluids, and encrinurids have benthic protaspides. Planktonic protaspides would have a greater propensity for distribution in ocean currents than benthic ones, and therefore may be of more limited paleobiogeographical utility. The combined data from the six different groups indicates that the complex paleobiogeographical patterns of the Japanese trilobite assemblages need to be interpreted with caution, and similarity of taxa does not necessarily denote paleogeographical proximity to other regions.     

The Kellwasser events in the Upper Devonian Frasnian to Famennian transition in the Toc Tat Formation,northern Vietnam

Upper Devonian carbonates of the Toc Tat Formation in the Si Phai Pass area of Dong Van District, northern Vietnam were deposited in carbonate platform, slope, and basin environments. These carbonates yield abundant conodonts indicative of the Palmatolepis nasuta, Pa. linguiformis and Pa. triangularis zones, the Frasnian–Famennian stage boundary being identified by the first occurrence of Pa. triangularis. Two positive carbon isotope excursions are recognized, the lower excursion peaking in the interval of the lower to middle Pa. nasuta Zone, whilst the upper excursion peaks just above the local Frasnian–Famennian boundary. Based on the biostratigraphy, these excursions equate to the Lower and Upper Kellwasser events. Locally, tentaculitoid taxa (Nowakia, Styliolina, Homoctenus, and Metastyliolina?) are abundant in the interval of the Pa. nasuta Zone, but show a drastic decline in abundance before the Lower Kellwasser Event, and only two taxa survived into the Famennian.     

Disturbance of recruitment success of mantis shrimp in Tokyo Bay associated with effects of hypoxia on the early life history

We investigated effects of severe hypoxia (dissolved oxygen <1 ml l⁻¹) on recruitment of mantis shrimp Oratosquilla oratoria in Tokyo Bay. Ten-year field surveys were conducted to examine quantitative relationships in annual mean densities of larvae and juveniles, and spatial distribution of juveniles and severe hypoxia. There was no significant correlation between annual mean densities of larvae and juveniles, suggesting that mortality during larval or juvenile stages varies among years, which might have regulated abundance of young-of-the-year juveniles. Juvenile density was low in the severely hypoxic area, implying that hypoxia could affect survivals and spatial distribution of juveniles. Meanwhile, there are yearly fluctuations in juvenile density in normoxic areas of both northern and southern part of the bay. This evidence suggests that abundance of post-settled juveniles might have been determined by not only effects of hypoxia, but also other factors influencing mortality during the early life stages.     

Reaction-induced grain boundary cracking and anisotropic fluid flow during prograde devolatilization reactions within subduction zones

Devolatilization reactions during prograde metamorphism are a key control on the fluid distribution within subduction zones. Garnets in Mn-rich quartz schist within the Sanbagawa metamorphic belt of Japan are characterized by skeletal structures containing abundant quartz inclusions. Each quartz inclusion was angular-shaped, and showed random crystallographic orientations, suggesting that these quartz inclusions were trapped via grain boundary cracking during garnet growth. Such skeletal garnet within the quartz schist formed related to decarbonation reactions with a positive total volume change (?V _t > 0), whereas the euhedral garnet within the pelitic schists formed as a result of dehydration reaction with negative ?V _t values. Coupled hydrological–chemical–mechanical processes during metamorphic devolatilization reactions were investigated by a distinct element method (DEM) numerical simulation on a foliated rock that contained reactive minerals and non-reactive matrix minerals. Negative ?V _t reactions cause a decrease in fluid pressure and do not produce fractures within the matrix. In contrast, a fluid pressure increase by positive ?V _t reactions results in hydrofracturing of the matrix. This fracturing preferentially occurs along grain boundaries and causes episodic fluid pulses associated with the development of the fracture network. The precipitation of garnet within grain boundary fractures could explain the formation of the skeletal garnet. Our DEM model also suggests a strong influence of reaction-induced fracturing on anisotropic fluid flow, meaning that dominant fluid flow directions could easily change in response to changes in stress configuration and the magnitude of differential stress during prograde metamorphism within a subduction zone.     

A new algorithm for distance cartogram construction

A distance cartogram is a diagram that visualizes the proximity indices between points in a network, such as time–distances between cities. The Euclidean distances between the points on the distance cartogram represent the given proximity indices. This is a useful visualization tool for the level of service of transport, e.g. difference in the level of service between regions or points in a network and its improvement in the course of time. The two previously proposed methods—multidimensional scaling (MDS) and network time–space mapping—have certain advantages and disadvantages. However, we observe that these methods are essentially the same, and the merits of both these methods can be combined to formulate a generalized solution. In this study, we first formulate the time–space mapping problem, which includes the key features of both of the above stated methods, and propose a generalized solution. We then apply this solution to the time–distances of Japan's railway networks to confirm its applicability.