cDNA cloning and expression of a cytochrome P450 1A (CYP1A) gene from the hermaphroditic fish Rivulus marmoratus

We previously described the genomic structure of the cytochrome P450 1A (CYP1A) gene from the hermaphroditic fish Rivulus marmoratus [Kim, I.-C., Kim, Y.J., Yoon, Y.-D, Kawamura, S., Lee, Y.-S., Lee, J.-S., 2004a. Cloning of cytochrome P450 1A (CYP1A) genes from the hermaphroditic fish Rivulus marmoratus and the Japanese medaka Oryzias latipes. Mar. Environ. Res. 58, 125–129]. To further characterize R. marmoratus CYP1A, we cloned the cDNA sequence of a CYP1A gene from this species and also expressed its recombinant protein in an E. coli system. We exposed R. marmoratus to 4-nonylphenol, and found a small induction of CYP1A mRNA in the treated animals. In this paper, we discuss the characteristics of R. marmoratus CYP1A gene as well as its potential use in a biomonitoring assay.     

Placing geographies of public health

Following the move to a 'post–medical' geography, a large amount of research has come to focus on public health issues. This paper explores these current geographies of public health and argues for the development of a more critical perspective. In particular, it draws on commentary that has emerged out of debates that have taken place within a body of literature usually identified as the critical 'new' public health. The paper goes on to argue that such scholarship offers crucial insights for the production of a critical geography of public health.     

Factors controlling the interannual variations of MJO intensity

The interannual variations of intensity of the Madden-Julian Oscillation (MJO) during boreal winter are investigated by using the observed outgoing longwave radiation (OLR) and the reanalysis data of ECMWF and NCEP. The standard deviation of 20-80-day filtered OLR anomaly is used to measure the MJO intensity. The dominant spatial structure of the interannual variability is revealed by an EOF analysis of the MJO intensity field. It is found that the leading mode is associated with eastern Pacific type ENSO, whereas the second mode is related to central Pacific type ENSO. A simple atmospheric model is used to investigate the relative roles of background moisture and wind changes in affecting the overall strength of MJO. The numerical experiments indicate that the background moisture effect is dominant while the background wind change has a minor effect.     

CONNECTION OF THE SOUTH CHINA SEA SUMMER MONSOON TO MARITIME CONTINENT CONVECTION AND ENSO

The relationship between the intensity of the South China Sea summer monsoon (SCSSM) and the Nino3.4 index and anomalous atmospheric circulation patterns associated with a strong and weak SCSSM are investigated using the NCEP/NCAR reanalysis data, Extended Reconstructed Sea Surface Temperature (ERSST) data and Climate Prediction Center Merged Analysis of Precipitation (CMAP) data. The SCSSM is significantly positively correlated with the Nino3.4 index in the succeeding northern autumn and winter. In the strong minus weak SCSSM composite, a positive East Asia-Pacific teleconnection (EAP) pattern and a negative Europe-Asian-Pacific teleconnection (EUP) pattern appear in the 500 hPa height difference field; low-level cross-equatorial flows are strengthened over the Maritime Continent (MC) region; positive (negative) precipitation anomalies occur in the South China Sea and western north Pacific (MC). A possible mechanism through which SCSSM affects ENSO is proposed. A strong (weak) SCSSM strengthens (weakens) cross-equatorial flows over the MC. The anomalous cross-equatorial flows cool (warm) the SST around the MC through enhanced (reduced) surface latent heat fluxes. The cooling (warming) further leads to suppressed (enhanced) convection over the MC, and causes the anomalous westerly (easterly) in the equatorial western Pacific, which favors the onset of El Ni?o (La Ni?a) through modulating the positive air-sea feedback process.     

Assessment of atmosphere-ocean general circulation model simulations of winter northern hemisphere atmospheric blocking

An assessment of six coupled Atmosphere-Ocean General Circulation Models (AOGCMs) is undertaken in order to evaluate their ability in simulating winter atmospheric blocking highs in the northern hemisphere. The poor representation of atmospheric blocking in climate models is a long-standing problem (e.g. D’Andrea et?al. in Clim Dyn 4:385–407, 1998), and despite considerable effort in model development, there is only a moderate improvement in blocking simulation. A modified version of the Tibaldi and Molteni (in Tellus A 42:343–365, 1990) blocking index is applied to daily averaged 500?hPa geopotential fields, from the ERA-40 reanalysis and as simulated by the climate models, during the winter periods from 1957 to 1999. The two preferred regions of blocking development, in the Euro-Atlantic and North Pacific, are relatively well captured by most of the models. However, the prominent error in blocking simulations consists of an underestimation of the total frequency of blocking episodes over both regions. A more detailed analysis revealed that this error was due to an insufficient number of medium spells and long-lasting episodes, and a shift in blocking lifetime distributions towards shorter blocks in the Euro-Atlantic sector. In the Pacific, results are more diverse; the models are equally likely to overestimate or underestimate the frequency at different spell lengths. Blocking spatial signatures are relatively well simulated in the Euro-Atlantic sector, while errors in the intensity and geographical location of the blocks emerge in the Pacific. The impact of models’ systematic errors on blocking simulation has also been analysed. The time-mean atmospheric circulation biases affect the frequency of blocking episodes, and the maximum event duration in the Euro-Atlantic region, while they sometimes cause geographical mislocations in the Pacific sector. The analysis of the systematic error in time-variability has revealed a negative relationship between the high-frequency variability of the transient eddies in the areas affected by blocking and blocking frequency. The blocking responses to errors in the low-frequency variability are different according to the region considered; the amplitude of the low-frequency variability is positively related to the blocking frequency and persistence in the Euro-Atlantic sector, while no such consistency is observed in the Pacific.     

A mechanism for formation of the western North Pacific monsoon trough: nonlinear upscale cascade

Linear and nonlinear barotropic vorticity model frameworks are constructed to understand the formation of the monsoon trough in boreal summer over the western North Pacific. The governing equation is written with respect to specified zonal background flows, and a wave perturbation is prescribed in the eastern boundary. Whereas a uniform background mean flow leads no scale contraction, a confluent background zonal flow causes the contraction of zonal wavelength. Under linear dynamics, the wave contraction leads to the development of smaller scale vorticity perturbations. As a result, there is no upscale cascade. Under nonlinear dynamics, cyclonic (anticyclonic) wave disturbances shift northward (southward) away from the central latitude due to the vorticity segregation process. The merging of small-scale cyclonic and anticyclonic perturbations finally leads to the generation of a pair of large-scale cyclonic and anti-cyclonic vorticity gyres, straddling across the central latitude. The large-scale cyclonic circulation due to nonlinear upscale cascade can be further strengthened through a positive convection-circulation feedback.

     

Late Miocene evaporite geochemistry of Lorca and Fortuna basins (Eastern Betics,SE Spain): Evidence of restriction and continentalization

The Lorca and Fortuna basins are two intramontane Neogene basins located in the eastern Betic Cordillera (SE Spain). During the Late Tortonian—Early Messinian, marine and continental evaporites precipitated in these basins as a consequence of increased marine restriction and isolation. Here we show a stratigraphic correlation between the evaporite records of these basins based on geochemical indicators. We use SO₄ isotope compositions and Sr isotopic ratios in gypsum, and halite Br contents to characterize these units and to identify the marine or continental source of the waters feeding the evaporite basins. In addition, we review the available chronological information used to date these evaporites in Lorca (La Serrata Fm), including a thick saline deposit, that we correlate with the First Evaporitic Group in Fortuna (Los Baños Fm). This correlation is also supported by micropalaeontological data, giving a Late Tortonian age for this sequence. The Second Evaporitic Group, (Chicamo Fm), and the Third Evaporitic Group (Rambla Salada Fm) developed only in Fortuna during the Messinian. According to the palaeogeographical scheme presented here, the evaporites of the Lorca and Fortuna basins were formed during the Late Tortonian—Early Messinian, close to the Betic Seaway closure. Sulphate isotope compositions and Sr isotopic ratios of the Ribera Gypsum Mb, at the base of the Rambla Salada Fm (Fortuna basin), match those of the Late Messinian selenite gypsum beds in San Miguel de Salinas, in the near Bajo Segura basin (40 km to the East), and other Messinian Salinity Crisis gypsum deposits in the Mediterranean. According to these geochemical indicators and the uncertainty of the chronology of this unit, the assignment of the Rambla Salada Fm to the MSC cannot be ruled out.     

AWAPer: An R package for area weighted catchment daily meteorological data anywhere within Australia

Meteorological time-series data are a fundamental input to hydrological investigations. But sourcing data is often laborious and plagued with difficulties. In an effort to improve efficiency and rigor we present an R-package, named AWAPer ( https://github.com/peterson-tim-j/AWAPer ), for the efficient estimation of daily area weighted catchment average and spatial variance of meteorological variables, including evapotranspiration. The package allows creation and updating of a data-cube of gridded daily data from 1900 onwards. Once created, point and area weighted estimates can be extracted at user-defined locations and time periods for anywhere within Australia. Examples of point and catchment average extraction are presented.