The development of Fe-nodules surrounding biological material mediated by microorganisms

Takashikozo is a phenomenon of Quaternary sediments in Japan. They are cylindrical Fe-oxyhydroxide nodules that form as plaques round plant roots, where Fe is preferentially concentrated to develop a solid wall. Structural features suggest that after the roots have decayed, the central space where the roots were situated acts as a flow path for oxidized water. Analysis of microbial 16S rDNA extracted from the nodules identified iron-oxidizing bacteria encrusted round the roots where they are the likely initiators of nodule formation. Direct microscopic observation revealed an accumulation of Fe-oxyhydroxides that fill the pore spaces and is also likely to be linked with the encrusting microbial colonies. Geological history and nanofossil evidence suggest that these Fe-nodules may have been buried at a depth of up to several tens of meters for at least 10⁵ years in reducing Quaternary sediments. Thus Fe-oxyhydroxide nodules that have formed in a geological environment at the interfaces between water and rock by microbial mediation can persist under reducing conditions. If this is the case, the phenomenon is significant as an analogue of post-closure conditions in radioactive waste repositories, since it could influence nuclide migration.     

Chromium solubility in anhydrous Phase B

The crystal structure and chemical composition of a crystal of (Mg_14?x Cr _x )(Si_5?x Cr _x )O₂₄ (x ≈ 0.30) anhydrous Phase B (Anh-B) synthesized in the model system MgCr₂O₄–Mg₂SiO₄ at 12 GPa and 1600 °C have been investigated. The compound was found to be orthorhombic, space group Pmcb, with lattice parameters a = 5.900(1), b = 14.218(2), c = 10.029(2) Å, V = 841.3(2) Å³ and Z = 2. The structure was refined to R ₁ = 0.065 using 1492 independent reflections. Chromium was found to substitute for both Mg at the M3 site (with a mean bond distance of 2.145 Å) and Si at the octahedral Si1 site (mean bond distance: 1.856 Å), according to the reaction Mg²⁺ + Si⁴⁺ = 2Cr³⁺. Such substitutions cause a reduction in the volume of the M3 site and an increase in the volume of the Si-dominant octahedron with respect to the values typically observed for pure Anh-B and Fe²⁺-bearing Anh-B. Taking into account that Cr³⁺ is not expected to be Jahn–Teller active, it appears that both the Cr³⁺–for–Mg and Cr³⁺–for–Si substitutions in the Anh-B structure decrease the distortion of the octahedra. Electron microprobe analysis gave the Mg_13.66(8)Si_4.70(6)Cr_0.62(4)O₂₄ stoichiometry for the studied phase. The successful synthesis of this phase provides new information for the possible mineral assemblages occurring in the Earth’s deep upper mantle and shed new light on the so-called X discontinuity that has been observed at 275–345 km depth in several subcontinental and subduction zone environments.     

Measurements of wave normal direction of whistler mode signals in the ionosphere by means of the Rocket-Doppler technique

Wave normal directions of VLF signals propagating through the ionosphere can be determined by measuring Doppler frequency shift of the signals by means of rocket borne receivers. Two rockets were launched to detect the NWC signal of 22.3 kHz which was transmitted from Australia and propagated on two completely different paths, one being propagated through the Earth-ionosphere waveguide and up to the rocket, the other propagated down to the rocket by the whistler mode directly from the source in the opposite hemisphere. The wave normal directions of the latter mode were almost vertically downward in the ionosphere in the northern hemisphere, although substantial error was involved in the determination of the wave normal direction for a part of the upgoing flight of the rockets, due to the relative geometry of the directions of the rocket flight and the geomagnetic field. The effect of the horizontal gradients of the ionosphere on the above results were found to be not significant. From the experimental results it is concluded that field aligned ducts stretching down to the rocket altitudes did not exist, at least, during the rocket flights.     

Seasonal Variation of Stratification in the Gulf of Thailand

Intensive hydrographic observations were carried out in the western part of the Gulf of Thailand and the east coastal sea of Peninsular Malaysia in September 1995 and April–May 1996. The characteristics of seasonal variation of oceanic condition in that area are discussed basis of an analysis of observed water temperature, salinity and density distributions in these cruises and NAGA cruises (Yanagi and Takao, 1998a). Stratification is most developed in March–May mainly due to large sea surface heating and weak sea surface wind, which weakened until September–October, vanishing in December–January. The horizontal distribution of bottom cold, saline and heavy water masses, which are found during the stratified season, is governed by the tidal mixing and the water depth. Water exchange between the Gulf of Thailand and the South China Sea becomes large in March–May due to a coupled effect of the intensified estuarine circulation and the Ekman transport by the southwest monsoon. This revised version was published online in August 2006 with corrections to the Cover Date.     

Generation mechanisms of tidal residual circulation

Two new types of mechanism for the generation of tidal residual flow are revealed with the use of a hydraulic model experiment. A remarkable anticlockwise tidal residual circulation is formed in a model bay due to the presence of a tidal current, the Coriolis force and a horizontal boundary. A similar circulation is also formed due to the presence of a bottom slope, a horizontal boundary and a tidal current which flows normal to the inclination of the bottom slope. The residual circulation in the Sea of Iyo in the Seto Inland Sea is considered to be due to a combination of the effects of the Coriolis force, a bottom slope, a horizontal boundary and the tidal current. We classified some of the generation mechanisms of tidal residual flow which have been described to date into seven types on the basis of vorticity considerations.     

Dynamics of elastically moored floating objects

The two-dimensional problem of wave transformation by, and motions of, moored floating objects is solved numerically as a boundary value problem by direct use of Green's identity formula for a potential function. The cross-sectional shape of the floating object, the bottom configuration and the mooring arrangements may be all arbitrary. For a given incident wave, the three modes of body motion, the wave system and mooring forces are all solved at the same time. A laboratory experiment is conducted to verify the theory. Generally good agreements between the theory and experiments are obtained as long as the viscous damping due to flow separation is small. A numerical experiment indicates that a conventional sluck mooring is to worsen the wave attenuation by a floating breakwater and that a properly arranged elastic mooring can considerably improve the wave attenuation by a floating breakwater.     

Algal Growth Potential and the limiting nutrient in Mikawa Bay

The Algal Growth Potential (AGP) of water samples collected off Gamagori in Mikawa Bay was measured from May 1978 through February 1979, and the limiting nutrient was determined using regression analysis and enrichment bioassays. The surface and bottom water samples had AGP that produced increments of chemical oxygen demand (COD) of 2.1 mg l^–1 and 3.1 mg l^–1, respectively, on average. These values ofCOD correspond to 46% and 97% of the average COD values of the raw water samples at the surface and bottom, respectively. Seasonal changes of AGP showed a close correlation with those of dissolved inorganic nitrogen (DIN) concentration. Enrichment bioassays showed that DIN was the most deficient nutrient. The DIN:phosphate-phosphorus (PO₄ ^3–-P) ratios and DIN: dissolved phosphorus (DP) ratios in the water samples were below the cellular N:P ratios of the natural algal populations. These results suggest that AGP was mainly limited by DIN concentration.     

Baroclinic eddies south of Cheju Island in the East China Sea

The detailed structures of baroclinic eddies, that is, an anticlockwise circulation in the upper layer and a clockwise one in the lower layer south of Cheju Island in the East China Sea have been revealed by intensive field observation. Such baroclinic eddies are accompanied by the southward spreading of the Yellow Sea Bottom Cold Water.     

Interannual fluctuations in recruitment of walleye pollock in the Oyashio region related to environmental changes

The Japanese Pacific walleye pollock (Theragra chalcogramma) stock is the largest stock of this species in Japanese waters. It is a key component of the Oyashio ecosystem. In southern Hokkaido waters, these fish spawn mainly during January and February near the mouth of Funka Bay (FB), and most eggs and larvae are transported into FB. During midsummer juvenile pollock migrate along the southern coast of Hokkaido to a nursery ground on the continental shelf off eastern Hokkaido (Doto area). However, some eggs and larvae are transported southward to the Tohoku region (TR). Transport depends largely on the Oyashio, which generally flows southward along the eastern coasts of Hokkaido and Tohoku. Thus, this stock has two different recruitment routes: FB–Doto and FB–TR. In the 1980s, when the southward flow of the Oyashio was strong, the number of age-2 pollock estimated from a virtual population analysis (VPA) indicated that recruitment to the entire stock remained at a medium level. In the 1990s, when the Oyashio weakened, strong year-classes occurred in 1991, 1994, and 1995, but not in the latter half of the 1990s. Juvenile catches in the TR by commercial fisheries, which can be taken as indices of recruitment level via FB–TR, were high during the 1980s and decreased in the 1990s. Although there was no significant difference in the average number of recruits between the 1980s and the 1990s as estimated from a VPA, the recruitment patterns differed between the two decades. Here, we propose that recruitment routes of this stock shifted in response to environmental changes.