Upstream—Downstream Shifts in Peak Recruitment of the Native Olympia Oyster in San Francisco Bay During Wet and Dry Years

Understanding the conditions that drive variation in recruitment of key estuarine species can be important for effective conservation and management of their populations. The Olympia oyster (Ostrea lurida) is native to the Pacific coast of North America and has been a target of conservation efforts, though relatively little information on larval recruitment exists across much of its range. This study examined the recruitment of Olympia oysters at biweekly to monthly intervals at four sites in northern San Francisco Bay from 2010 to 2015 (except 2013). Mean monthly temperatures warmed at all sites during the study, while winter (January–April) mean monthly salinity decreased significantly during a wet year (2011), but otherwise remained high as a result of a drought. A recurring peak in oyster recruitment was identified in mid-estuary, in conditions corresponding to a salinity range of 25–30 and >16 °C at the time of settlement (April–November). Higher average salinities and temperatures were positively correlated with greater peak recruitment. Interannual variation in the timing of favorable conditions for recruitment at each site appears to explain geographic and temporal variation in recruitment onset. Higher winter/spring salinities and warmer temperatures at the time of recruitment corresponded with earlier recruitment onset within individual sites. Across all sites, higher winter/spring salinities were also correlated with earlier onset and earlier peak recruitment. Lower winter salinities during 2011 also resulted in a downstream shift in the location of peak recruitment.     

A new interpretation of measured ionic diffusion coefficient in compacted bentonite-based materials

Previous model based on free-water properties to interpret the measured diffusion coefficient in compacted bentonite-based materials is demonstrated to be inadequate. A model considering ionic diffusion in clay surface (bound) and interstitial (free) water is presented to interpret the measured diffusion coefficients and to explain the possible reasons for the discrepancies in the data. The measured diffusion coefficient is determined by the predominant diffusion pathway, which depends on the charge of diffusing species, soil fabric, diffusion time and by the starting concentration condition of the method used.     

Flow,stress and sediment resuspension in a shallow tidal channel

In October of 2004, a 3-d observational program to measure flow and sediment resuspension within a coastal intertidal salt marsh was conducted in the North Inlet/Winyah Bay National Estuarine Research Reserve located near Georgetown, South Carolina. Current and acoustic backscatter profiles were obtained from a moored acoustic Doppler current profiler (ADCP) deployed in a shallow tidal channel during the spring phase of the tidal cycle under high discharge conditions. The channel serves as a conduit between Winyah Bay, a large brackish estuary, and North Inlet, a saline intertidal coastal salt marsh with little freshwater input. Salinity measurements indicate that the water column is vertically well mixed during flood, but becomes vertically stratified during early ebb. The stratification results from brackish (15 psu) Winyah Bay water entering North Inlet via the tidal channel, suggesting an exchange mechanism that permits North Inlet to receive a fraction of the poor water quality and high discharge flow from upland rivers. Although maximum flood currents exceed maximum ebb currents by 0.2 m s⁻¹, suspended sediment concentrations are highest during the latter ebb phase and persist for a longer fraction of the ebb cycle. Even though the channel is flood-dominated, the higher concentrations occurring over a longer fraction of the ebb phase indicate net particulate transport from Winyah Bay to North Inlet during spring tide accompanied by high discharge. Our evidence suggests that the higher concentrations during ebb result from increased bed friction caused by flow asymmetries and variations in water depth in which the highest stresses occur near the end of ebb near low water despite stronger maximum currents during flood.     

Principal Slip Zones in Limestone: Microstructural Characterization and Implications for the Seismic Cycle (Tre Monti Fault, Central Apennines, Italy)

Earthquakes in central Italy, and in other areas worldwide, often nucleate within and rupture through carbonates in the upper crust. During individual earthquake ruptures, most fault displacement is thought to be accommodated by thin principal slip zones. This study presents detailed microstructural observations of the slip zones of the seismically active Tre Monti normal fault zone. All of the slip zones cut limestone, and geological constraints indicate exhumation from <2?km depth, where ambient temperatures are ?100°C. Scanning electron microscope observations suggest that the slip zones are composed of 100% calcite. The slip zones of secondary faults in the damage zone contain protocataclastic and cataclastic fabrics that are cross-cut by systematic fracture networks and stylolite dissolution surfaces. The slip zone of the principal fault has much more microstructural complexity, and contains a 2?C10?mm thick ultracataclasite that lies immediately beneath the principal slip surface. The ultracataclasite itself is internally zoned; 200?C300???m-thick ultracataclastic sub-layers record extreme localization of slip. Syn-tectonic calcite vein networks spatially associated with the sub-layers suggest fluid involvement in faulting. The ultracataclastic sub-layers preserve compelling microstructural evidence of fluidization, and also contain peculiar rounded grains consisting of a central (often angular) clast wrapped by a laminated outer cortex of ultra-fine-grained calcite. These ??clast-cortex grains?? closely resemble those produced during layer fluidization in other settings, including the basal detachments of catastrophic landslides and saturated high-velocity friction experiments on clay-bearing gouges. An overprinting foliation is present in the slip zone of the principal fault, and electron backscatter diffraction analyses indicate the presence of a weak calcite crystallographic preferred orientation (CPO) in the fine-grained matrix. The calcite c-axes are systematically inclined in the direction of shear. We suggest that fluidization of ultracataclastic sub-layers and formation of clast-cortex grains within the principal slip zone occurred at high strain rates during propagation of seismic ruptures whereas development of an overprinting CPO occurred by intergranular pressure solution during post-seismic creep. Further work is required to document the range of microstructures in localized slip zones that cross-cut different lithologies, and to compare natural slip zone microstructures with those produced in controlled deformation experiments.     

The age of the martian meteorite Northwest Africa 1195 and the differentiation history of the shergottites

Samarium-neodymium isotopic analyses of unleached and acid-leached mineral fractions from the recently identified olivine-bearing shergottite Northwest Africa 1195 yield a crystallization age of 347 ± 13 Ma and an value of +40.1 ± 0.9. Maskelynite fractions do not lie on the Sm-Nd isochron and appear to contain a martian surface component with low ¹⁴⁷Sm/¹⁴⁴Nd and ¹⁴³Nd/¹⁴⁴Nd ratios that was added during shock. The Rb-Sr system is disturbed and does not yield an isochron. Terrestrial Sr appears to have affected all of the mineral fractions, although a maximum initial ⁸⁷Sr/⁸⁶Sr ratio of 0.7016 is estimated by passing a 347 Ma reference line through the maskelynite fraction that is least affected by contamination. The high initial value and the low initial ⁸⁷Sr/⁸⁶Sr ratio, combined with the geologically young crystallization age, indicate that Northwest Africa 1195 is derived from a source region characterized by a long-term incompatible-element depletion.The age and initial Sr and Nd isotopic compositions of Northwest Africa 1195 are very similar to those of Queen Alexandra Range 94201, indicating these samples were derived from source regions with similar Sr-Nd isotopic systematics. These similarities suggest that these two meteorites share a close petrogenetic relationship and might have been erupted from a common volcano. The meteorites Yamato 980459, Dar al Gani 476, Sayh al Uhaymir 005/008, and Dhofar 019 also have relatively old ages between 474 and 575 Ma and trace element and/or isotopic systematics that are indicative of derivation from incompatible-element-depleted sources. This suggests that the oldest group of meteorites is more closely related to one another than they are to the younger meteorites that are derived from less incompatible-element-depleted sources. Closed-system fractional crystallization of this suite of meteorites is modeled with the MELTS algorithm using the bulk composition of Yamato 980459 as a parent. These models reproduce many of the major element and mineralogical variations observed in the suite. In addition, the rare earth element systematics of these meteorites are reproduced by fractional crystallization using the proportions of phases and extents of crystallization that are calculated by MELTS. Other shergottites that demonstrate enrichments in incompatible-elements and have evolved Sr and Nd isotopic systematics have some geochemical systematics that are similar to those observed in the depleted group. Most notably, although they exhibit a very limited range of incompatible trace element and isotopic compositions, they have highly variable major element compositions. This is also consistent with evolution from a common mantle source region by variable amounts of fractional crystallization. If this scenario is correct, it suggests that the combined effects of source composition and fractional crystallization are likely to account for the major element, trace element, and isotopic diversity of all shergottites.     

Voltammetric estimation of iron(III) thermodynamic stability constants for catecholate siderophores isolated from marine bacteria and cyanobacteria

Thermodynamic stability constants have been estimated for the complexation of iron(III) with catecholate-type siderophores isolated from the marine bacterium Alteromonas luteoviolacea and from the marine cyanobacterium Synechococcus sp. PCC 7002. Stability constants were determined utilizing the “chelate scale” of Taylor et al. (1994). The scale is based upon a linear relationship between the reduction potentials and the pH-independent thermodynamic stability constants for known iron(III) complexes. Log K values for the alterobactin B ferric iron complex are 43.6 ± 1.5 at pH 8.2 and 37.6 ± 1.2 at pH 6, consistent with a shift from bis-catecholate to monosalicylate/monocatecholate iron coordination with decreasing pH. Synechococcus isolates PCC 7002 Nos. 1 and 3 formed iron(III) complexes with stability constants of approximately 38.1 ± 1.2 and 42.3 ± 1.5, respectively. The binding strengths of the iron(III) complexes examined in this study are quite high, suggesting that catecholate siderophores may play a role in the solubilization and biological uptake of iron in the marine environment.     

Viruses as potential regulators of regional brown tide blooms caused by the alga,Aureococcus anophagefferens

Blooms of the brown tide organismAureccoccus anophagefferens have recurred in the coastal bays in New Jersey since 1995 and in the coastal bays of Long Island since 1985. Intracellular viral-like particles (VLPs) were documented during 1999–2000 brown tide blooms in Little Egg Harbor, New Jersey, but it was not determined whether cells were infected during the termination of the bloom. The objective of this study was to determine if VLPs infected and lysed natural populations ofA. anophagefferens in coastal bays of New Jersey and New York in 2002 with the same frequency as in 1999–2000 and especially at the termination of the bloom. Our results confirmed that the highest percentage (37.5%) of VLP-infected cells occurred at the termination of the brown tide bloom in New Jersey in 2002. Intracellular VLPs were present throughout the bloom event. The percentage of visibly infected cells was higher at the beginning of the bloom than during the peak of the bloom. The intracellular VLPs in natural populations ofA. anophagefferens were consistent in size and shape (approximately 140 nm in diameter) and comparable to those in previous studies. Concentrated viral isolates, prepared from waters during brown tide blooms in New York and New Jersey in 2002, infected healthy laboratoryA. anophagefferens cultures in vitro. The viral isolates associated with the highest laboratory viral activity (lysis positive) were concentrated from water samples having the highest viral and bacteria concentrations. The intracellular viruses in these virally infected laboratory cultures ofA. anophagefferens were similar in size and shape to those found in natural populations. The successful isolation of a virus specific toA. anophagefferens from a brown tide bloom in the field, the similarity of ultrastructure of VLPs infecting both natural populations and laboratory infected cultures, and the pattern of VLP infection during bloom activity in combination with the observed high percentage of VLP-infected cells during bloom termination, supports, the hypothesis that viruses may be a major source of mortality for brown tide blooms in regional coastal bays of New Jersey and New York.     

Adjoint analysis of Buckley-Leverett and two-phase flow equations

This paper analyzes the adjoint equations and boundary conditions for porous media flow models, specifically the Buckley-Leverett equation, and the compressible two-phase flow equations in mass conservation form. An adjoint analysis of a general scalar hyperbolic conservation law whose primal solutions include a shock jump is initially presented, and the results are later specialized to the Buckley-Leverett equation. The non-convexity of the Buckley-Leverett flux function results in adjoint characteristics that are parallel to the shock front upstream of the shock and emerge from the shock front downstream of the shock. Thus, in contrast to the behavior of Burgers’ equation where the adjoint is continuous at a shock, the Buckley-Leverett adjoint, in general, contains a discontinuous jump across the shock. Discrete adjoint solutions from space-time discontinuous Galerkin finite element approximations of the Buckley-Leverett equation are shown to be consistent with the derived closed-form analytical solutions. Furthermore, a general result relating the adjoint equations for different (though equivalent) primal equations is used to relate the two-phase flow adjoints to the Buckley-Leverett adjoint. Adjoint solutions from space-time discontinuous Galerkin finite element approximations of the two-phase flow equations are observed to obey this relationship.