A comparison of cytochrome P4501A (CYP1A) mRNA inducibility in four species of Atlantic coast anadromous fishes

Quantification of levels of cytochrome P4501A (CYP1A) gene expression in sentinel species of fishes has been proposed as a management tool to evaluate contamination of aquatic systems. Based on preliminary studies, we hypothesized that differences in CYP1A mRNA inducibility among individuals, populations, or species might lead to spurious conclusions when using this approach in environmental monitoring programs. To address this possibility, we quantitated and compared CYP1A mRNA induction levels in four species of common Atlantic Coast estuarine fish: smooth flounder, hogchoker, striped bass, and Atlantic tomcod, which were treated with model chemicals (beta naphthoflavone (β-NF), or benzo[a]pyrene at 10 ppm) known to induce CYP1A mRNA, or were exposed to contaminated environments. Species-specific CYP1A DNA probes were generated from PCR (polymerase chain reaction) amplification of genomic DNA using conserved oligonucleotide primers, and, along with cloned rainbow trout and Atlantic tomcod CYP1A cDNA probes were used to quantify CYP1A mRNA levels in northern blot analyses. Successful PCR amplification of CYP1A hybridizable DNA fragments was observed for all four species. Results from northern blot analyses showed large differences in CYP1A mRNA induction among species; only Atlantic tomcod exhibited significant induction of CYP1A mRNA for both chemically treated (97-fold) and environmentally exposed fish (34-fold). Significant, although lower, levels of induction were observed in β-NF treated (14-fold) smooth flounder, but not in environmentally exposed smooth flounder. Only low levels (not significant) of CYP1A gene induction were detected in hogchokers and striped bass. We conclude that CYP1A mRNA inducibility differed significantly among fish taxa perhaps due to differences in regulation of gene expression, suggesting that careful selection of sentinel species should be exercised prior to the use of CYP1A mRNA induction in environmental monitoring programs. However, the significance of differences in CYP1A mRNA inducibility in relation to higher level biological endpoints has yet to be determined.     

The influence of coupled physical swelling and chemical reactions on deformable geomaterials

Coupled thermo‐hydro‐mechanical‐chemical modelling has attracted attention in past decades due to many contemporary geotechnical engineering applications (e.g., waste disposal, carbon capture and storage). However, molecular‐scale interactions within geomaterials (e.g., swelling and dissolution/precipitation) have a significant influence on the mechanical behaviour, yet are rarely incorporated into existing Thermal‐Hydro‐Mechanical‐Chemical (THMC) frameworks. This paper presents a new coupled hydro‐mechanical‐chemical constitutive model to bridge molecular‐scale interactions with macro‐physical deformation by combining the swelling and dissolution/precipitation through an extension of the new mixture‐coupling theory. Entropy analysis of the geomaterial system provides dissipation energy, and Helmholtz free energy gives the relationship between solids and fluids. Numerical simulation is used to compare with the selected recognized models, which demonstrates that the swelling and dissolution/precipitation processes may have a significant influence on the mechanical deformation of the geomaterials.     

Multi-scale characterization of a complex karst and alluvial aquifer system in southern Germany using a combination of different tracer methods

Water suppliers face major challenges such as climate change and population growth. To prepare for the future, detailed knowledge of water resources is needed. In southern Germany, the state water supplier Zweckverband Landeswasserversorgung provides 3 million people with drinking water obtained from a complex karst and alluvial aquifer system and the river Danube. In this study, a combination of different tracing techniques was used with the goal of a multi-scale characterization of the aquifer system and to gain additional knowledge about groundwater flow toward the extraction wells in the Danube Valley. For the small-scale characterization, selected groundwater monitoring wells were examined using single-borehole dilution tests. With these tests, a wide range of flow behavior could be documented, including fast outflow within just a few hours in wells with good connection to the aquifer, but also durations of many weeks in low-permeability formations. Vertical flow, caused by multiple flow horizons or uprising groundwater, was detected in 40% of the tested wells. A regional multi-tracer test with three injections was used to investigate the aquifer on a large scale. For the highly karstified connection between a swallow hole and a spring group, high flow velocities of around 80 m/h could be documented. Exceptionally delayed arrivals, 250 and 307 days after the injection, respectively showing maximum velocities of 0.44 and 0.39 m/h, were observed in an area where low-permeability sediments overlay the karst conduits. With the chosen methods, a distinct heterogeneity caused by the geological setting could be documented on both scales.

     

In situ measurement of Re-Os isotopes in mantle sulfides by laser ablation multicollector-inductively coupled plasma mass spectrometry: analytical methods and preliminary results

A method has been developed for the in situ determination of Re-Os isotopes in single grains of sulfides in mantle-derived peridotites using a laser ablation microprobe attached to a multicollector-induced coupled plasma mass spectrometer (MC-ICPMS). High-precision Os isotope analysis by MC-ICPMS is demonstrated by the measurement of interlaboratory Os standards. Evaluation of mass bias correction procedures shows that the exponential law provides the best fit to the Os isotope data and that the ratio of the mass fractionation coefficients for Re and Os remains constant for the range of typical instrument operating conditions. This relationship enables the accurate and precise correction of the isobaric interference of ¹⁸⁷Re on ¹⁸⁷Os for ¹⁸⁷Re/¹⁸⁸Os values up to 1.6.Results are presented for single sulfide inclusions in olivine macrocryts from kimberlites in the Siberian and Slave Cratons, and sulfides enclosed in silicates and interstitial to silicates in peridotite xenoliths from the Slave Craton and Massif Central, France. Enclosed sulfides larger than 50 μm in diameter and with Os contents ≥40 ppm give ¹⁸⁷Os/¹⁸⁸Os ratios with a precision of 0.1% (2 SE), which is equivalent to N-TIMS whole-rock data. Interstitial sulfides typically have lower Os (10 to 30 ppm) and give analyses with lower precision (∼1 to 2%) but still provide valuable information on the movement of Os within the lithosphere. The sulfide inclusions in silicates preserve significantly less radiogenic Os isotopic compositions than interstitial sulfides and accordingly produce significantly older and more realistic Re-Os age information. Whole-rock Os isotope compositions reflect the proportions of different generations of enclosed and interstitial sulfides; this calls into question the significance of many published “depletion ages.”     

Contact Partial Melting of Granitic Country Rock, Melt Segregation, and Re-injection as Dikes into Ferrar Dolerite Sills, McMurdo Dry Valleys, Antarctica

Numerous, interconnected, granitic dikes (<30 cm in widthand hundeds of meters in length) cut Ferrar dolerite sills ofthe McMurdo Dry Valleys, Antarctica. The source of the graniticdikes is partial melting of granitic country rock, which tookplace in the crust at a depth of about 2–3 km adjacentto contacts with dolerite sills. Sustained flow of doleriticmagma through the sill generated a partial melting front thatpropagated into the granitic country rock. Granitic partialmelts segregated and collected at the contact in a melt-rich,nearly crystal-free reservoir adjacent to the initial doleritechilled margin. This dolerite chilled margin was subsequentlyfractured open in the fashion of a trapdoor by the graniticmelt, evacuating the reservoir to form an extensive complexof granitic dikes within the dolerite sills. At the time ofdike injection the dolerite was nearly solidified. Unusuallycomplete exposures allow the full physical and chemical processesof partial melting, segregation, and dike formation to be examinedin great detail. The compositions of the granitic dikes andthe textures of partially melted granitic wall rock suggestthat partial melting was characterized by disequilibrium mineraldissolution of dominantly quartz and alkali feldspar ratherthan by equilibrium melting. It is also unlikely that meltingoccurred under water-saturated conditions. The protolith granitecontains only 7 vol.% biotite and estimated contact temperaturesof 900–950°C suggest that melting was possible ina dry system. Granite partial melting, under closed conditions,extended tens of meters away from the dolerite sill, yet meltsegregation occurred only over less than one-half a meter fromthe dolerite chilled margin where the degree of partial meltingwas of the order of 50 vol.%. This segregation distance is consistentwith calculated length scales expected in a compaction-drivenprocess. We suggest that the driving force for compaction wasdifferential stress generated by a combination of volume expansionas a result of granite partial melting, contraction during doleritesolidification, and relaxation of the overpressure driving doleriteemplacement. On a purely chemical basis, the extent of meltsegregation necessary under fractional and batch melting tomatch the Rb concentrations between melt and parent rock isa maximum of 48 and 83 vol.% melt, respectively. KEY WORDS: Antarctica; dike injection; disequilibrium; granite partial melting; silicic melt segregation     

<Superscript>10</Superscript>Be, <Superscript>18</Superscript>O and radiogenic isotopic constraints on the origin of adakitic signatures: a case study from Solander and Little Solander Islands,New Zealand

Subduction-related Quaternary volcanic rocks from Solander and Little Solander Islands, south of mainland New Zealand, are porphyritic trachyandesites and andesites (58.20–62.19 wt% SiO₂) with phenocrysts of amphibole, plagioclase and biotite. The Solander and Little Solander rocks are incompatible element enriched (e.g. Sr ~931–2,270 ppm, Ba ~619–798 ppm, Th ~8.7–21.4 ppm and La ~24.3–97.2 ppm) with MORB-like Sr and Nd isotopic signatures. Isotopically similar quench-textured enclaves reflect mixing with intermediate (basaltic-andesite) magmas. The Solander rocks have geochemical affinities with adakites (e.g. high Sr/Y and low Y), whose origin is often attributed to partial melting of subducted oceanic crust. Solander sits on isotopically distinct continental crust, thus excluding partial melting of the lower crust in the genesis of the magmas. Furthermore, the incompatible element enrichments of the Solander rocks are inconsistent with partial melting of newly underplated mafic lower crust; reproduction of their major element compositions would require unrealistically high degrees of partial melting. A similar argument precludes partial melting of the subducting oceanic crust and the inability to match the observed trace element patterns in the presence of residual garnet or plagioclase. Alternatively, an enriched end member of depleted MORB mantle source is inferred from Sr, Nd and Pb isotopic compositions, trace element enrichments and εHf ? 0 CHUR in detrital zircons, sourced from the volcanics. ¹⁰Be and Sr, Nd and Pb isotopic systematics are inconsistent with significant sediment involvement in the source region. The trace element enrichments and MORB-like Sr and Nd isotopic characteristics of the Solander rocks require a strong fractionation mechanism to impart the high incompatible element concentrations and subduction-related (e.g. high LILE/HFSE) geochemical signatures of the Solander magmas. Trace element modelling shows that this can be achieved by very low degrees of melting of a peridotitic source enriched by the addition of a slab-derived melt. Subsequent open-system fractionation, involving a key role for mafic magma recharge, resulted in the evolved andesitic adakites.     

Statistical landslide susceptibility assessment of the Mansehra and Torghar districts,Khyber Pakhtunkhwa Province,Pakistan

This paper presents laboratory experiments and numerical simulations of effects of submerged obstacles on tsunami-like solitary wave and its run-up. This study was carried out for the breaking and non-breaking solitary waves on 1:19.85 uniform slope which contains a submerged obstacle. New laboratory experiments are performed to describe the mitigation of tsunami amplitude and run-up under the effect of submerged obstacles. We are based on experimental results obtained to validate the numerical model. The numerical modeling using COULWAVE aims essentially to show the effect of the obstacle on the shape of solitary wave and the limit of this effect. Using a multiple nonlinear regression, we have determined a model to estimate height of run-up according to the amplitude of the wave and the obstacle peak depth.     

Middle Pleistocene environments,landscapes and tephrostratigraphy of the Armenian Highlands: evidence from Bird Farm 1, Hrazdan Valley

The significance of the southern Caucasus in understanding Pleistocene hominin expansions is well established. However, the palaeoenvironments in which Palaeolithic occupation of the region took place are presently poorly defined. The Hrazdan river valley, Armenian Highlands, contains a rich Palaeolithic record alongside Middle Pleistocene volcanic, fluvial and lacustrine strata, and thus offer exciting potential for palaeoenvironmental reconstruction. We present the first results of sedimentological, geochemical, tephrostratigraphical and biological (diatoms) study of the sequence of Bird Farm 1, located in the central part of the valley. These data show six phases of landscape development during the interval 440–200 ka. The sequence represents the first quantitative Pleistocene diatom record from the Armenian Highlands and the southern Caucasus, and indicates the persistence of a deep, stratified lacustrine system, with evidence for changing lake productivity that is tentatively linked to climate. Furthermore, major element chemical characterization of visible and crypto-tephra horizons in the sequence enables the first stages of the development of a regional tephrostratigraphy. Together, the evidence from Bird Farm 1 demonstrates the importance of lacustrine archives in the region for palaeoenvironmental reconstruction and highlights the potential for linkages between archives on both a local and regional scale.     

Hydrothermal alteration and zeolitization of the Fohberg phonolite,Kaiserstuhl Volcanic Complex,Germany

The subvolcanic Fohberg phonolite (Kaiserstuhl Volcanic Complex, Germany) is an economic zeolite deposit, formed by hydrothermal alteration of primary magmatic minerals. It is mined due to the high (>40 wt%) zeolite content, which accounts for the remarkable zeolitic physicochemical properties of the ground rock. New mineralogical and geochemical studies are carried out (a) to evaluate the manifestation of hydrothermal alteration, and (b) to constrain the physical and chemical properties of the fluids, which promoted hydrothermal replacement. The alkaline intrusion is characterized by the primary mineralogy: feldspathoid minerals, K-feldspar, aegirine–augite, wollastonite, and andradite. The rare-earth elements-phase götzenite is formed during the late-stage magmatic crystallization. Fluid-induced re-equilibration of feldspathoid minerals and wollastonite caused breakdown to a set of secondary phases. Feldspathoid minerals are totally replaced by various zeolite species, calcite, and barite. Wollastonite breakdown results in the formation of various zeolites, calcite, pectolite, sepiolite, and quartz. Zeolites are formed during subsolidus hydrothermal alteration (<150 °C) under alkaline conditions. A sequence of Ca–Na-dominated zeolite species (gonnardite, thomsonite, mesolite) is followed by natrolite. The sequence reflects an increase in \(\log [(a_{{{\text{Na}}^{ + } }} )/(a_{{{\text{H}}^{ + } }} )]\) and decrease in \(\log [(a_{{{\text{Ca}}^{2 + } }} )/(a_{{{\text{H}}^{ + } }}^{2} )]\) of the precipitating fluid. Low radiogenic ⁸⁷Sr/⁸⁶Sr values indicate a local origin of the elements necessary for secondary mineral formation from primary igneous phases. In addition, fractures cut the intrusive body, which contain zeolites, followed by calcite and a variety of other silicates, carbonates, and sulfates as younger generations. Stable isotope analysis of late-fracture calcite indicates very late circulation of meteoric fluids and mobilization of organic matter from surrounding sedimentary units.