鳗鲡目鱼类线粒体蛋白质编码基因易位及系统演化关系分析

鳗鲡目鱼类线粒体基因组的基因组成较为保守,在58个线粒体基因组中,仅有3个物种存在基因数量的差异。在19个鳗鲡目鱼类线粒体基因组中存在主编码基因的重排。主编码基因的变异位点分析结果支持nad5、nad4和nad2基因作为cox1和lrRNA基因辅助的分子标记。鳗鲡科Anguillidae的20个种(亚种)聚在一起,强烈支持鳗鲡科为单系群(BPP=100)。鳗鲡科下属的3个类群(大洋洲类群、大西洋类群和印度洋-太平洋类群)也同时得到有力的验证(BPP均为100)。线鳗科Nemichthyidae和锯齿鳗科Serrivomeridae亲缘关系最近,二者聚类后,与鳗鲡科Anguillidae构成姊妹群(BPP=100)。在囊喉鱼亚目Saccopharyngoidei中,宽咽鱼科Eurypharyngidae与囊鳃鳗科Saccopharyngidae聚类(BPP=100),同时,单颌鳗科Monognathidae与月尾鳗科Cyematidae聚类(BPP=100),4个科聚在一支,支持囊喉鱼亚目为单系群(BPP=100)。在囊喉鱼亚目线粒体基因组中,3个物种(吞鳗Eurypharynx pelecanoides、拉文囊鳃鳗Saccopharynx lavenbergi和杰氏单颌鳗Monognathus jesperseni)存在主编码基因的重排。16种鳗鲡(细美体鳗Ariosoma shiroanago、短吻颈鳗Derichthys serpentinus、凯氏短尾康吉鳗Coloconger cadenati、鸭颈鳗Nessorhamphus ingolfianus、龟草鳗Thalassenchelys sp.、粗犁齿海鳗Cynoponticus ferox、百吉海鳗Muraenesox bagio、巨斑花蛇鳗Myrichthys maculosus、大吻沙蛇鳗Ophisurus macrorhynchos、几内亚副康吉鳗Paraconger notialis、哈氏异康吉鳗Heteroconger hassi、小头鸭嘴鳗Nettastoma parviceps、弱头鳗Leptocephalus sp.、斑点长犁齿鳗Hoplunnis punctata、尖吻小鸭嘴鳗Facciolella oxyrhyncha和星康吉鳗Conger myriaster),与鳗鲡目线粒体主编码基因的原始排列相比,共享nad6基因的易位。同时,基于线粒体基因组13个蛋白质编码基因构建的系统演化树,强烈支持这16个物种聚为一支(BPP=100)。然而,由此而带来的海鳗科Muraenesocidae、拟鯙科Chlopsidae和糯鳗科Congridae是否为单系群的问题,值得今后深入探究。     

分段多项式拟合在动三轴试验数据处理中的应用

动三轴采集的试验数据点(剪应变与动剪模量和阻尼比之间)具有离散性和有限性,为方便应用需要对数据点进行拟合,但现有经验公式不一定很好吻合试验数据。为得到不同剪应变与对应的动剪模量和阻尼比之间的关系,本文利用最小二乘原理,对渤海某海洋平台地基土进行动三轴试验获得的动剪模量、阻尼比与剪切应变的数据进行了分段多项式的拟合。数据处理过程是先对剪应变值进行了压缩处理,然后再分段低次多项式拟合,得到多项式拟合参数。通过此项改进解决了正规方程解中的病态问题,且拟合效果良好。     

应用样条插值提高GRAPES模式物理过程反馈精度

GRAPES (Global/Regional Assimilation and PrEdiction System) 模式动力框架中垂直方向变量的跳层设置采用Charney-Phillips分布,在整层上进行位温、水物质的计算,物理过程中在半层上对其进行处理。这样在GRAPES模式中,进入物理过程之前和物理过程计算完毕之后,都要采用线性插值进行整层和半层之间物理量的转换。由于线性插值精度欠佳,为提高上述反馈过程的精度,并保证水物质的正定性,该研究引入样条插值,并在水物质的插值过程中进行保单调处理,有效减小了位温场、水物质场的预报偏差,并提升了模式的综合预报性能。     

基于MapReduce计算模型的气象资料处理调优试验

云计算技术使用分布式的计算技术实现了并行计算的计算能力和计算效率,解决了单机服务器计算能力低的问题。基于长序列历史资料所计算得出的气候标准值对于气象领域实时业务、准实时业务及科学研究中均具有重要的意义。由于长序列历史资料数据量大、运算逻辑较复杂,在传统单节点计算平台上进行整编计算耗时非常长。该文基于Hadoop分布式计算框架搭建了集群模式的云计算平台,以长序列历史资料作为源数据,基于MapReduce计算模型实现了部分整编算法,提高计算时效。同时,由于数据源本身具有文件个数多、单个文件小等特点,对数据源存储形式及数据文件大小进行改造,分别利用SequenceFile方式及文本文件合并方式对同一种场景进行计算时效对比测试,分别测试了10个文件合并、100个文件合并两种情况,使时效性得到了更大程度的提升。     

Signal acquisition of Luojia-1A low earth orbit navigation augmentation system with software defined receiver

Low Earth Orbit (LEO) satellite navigation signal can be used as an opportunity signal in the case of a Global Navigation Satellite System (GNSS) outage, or as ...     

Spatiotemporal filtering of regional GNSS network’s position time series with missing data using principle component analysis

The existing spatiotemporal analysis methods suppose that the involved time series are complete and have the same data interval. However missing data inevitably occur in the position time series of Global Navigation Satellite Systems networks for many reasons. In this paper, we develop a modified principal component analysis to extract the Common Mode Error (CME) from the incomplete position time series. The principle of the proposed method is that a time series can be reproduced from its principle components. The method is equivalent to the method of Dong et al. (J Geophys Res 111:3405–3421, 2006) in case of no missing data in the time series and to the extended ‘stacking’ approach under the assumption of a uniformly spatial response. The new method is first applied to extract the CME from the position time series of the Crustal Movement Observation Network of China (CMONOC) over the period of 1999–2009 where the missing data occur in all stations with the different gaps. The results show that the CMEs are significant in CMONOC. The size of the first principle components for the North, East and Up coordinates are as large as 40, 41 and 37 % of total principle components and their spatial responses are not uniform. The minimum amplitudes of the first eigenvectors are only 41, 15 and 29 % for the North, East and Up coordinate components, respectively. The extracted CMEs of our method are close to the data filling method, and the Root Mean Squared error (RMS) values computed from the differences of maximum CMEs between two methods are only 0.31, 0.52 and 1.55 mm for North, East and Up coordinates, respectively. The RMS of the position time series is greatly reduced after filtering out the CMEs. The accuracies of the reconstructed missing data using the two methods are also comparable. To further comprehensively test the efficiency of our method, the repeated experiments are then carried out by randomly deleting different percentages of data at some stations. The results show that the CMEs can be extracted with high accuracy at the non missing-data epochs. And at the missing-data epochs, the accuracy of extracted CMEs has a strong dependence on the number of stations with missing data.     

Variability of Atlantic Meridional Overturning Circulation in FGOALS-g2简

The variability of Atlantic Meridional Overturning Circulation （AMOC） in the pre-industrial control experiment of the Flexible Global Ocean-Atmosphere-Land System model, Grid-point Version 2 （FGOALS-g2） was investigated using the model outputs with the most stable state in a 512-yr time window from the total 1500-yr period of the experiment. The period of AMOC in FGOALS-g2 is double peaked at 20 and 32 years according to the power spectrum, and 22 years according to an auto-correlation analysis, which shows very obvious decadal variability. Like many other coupled climate models, the decadal variability of AMOC in FGOALS-g2 is closely related to the convection that occurs in the Labrador Sea region. Deep convection in the Labrador Sea in FGOALS-g2 leads the AMOC maximum by 3-4 years. The contributions of thermal and haline effects to the variability of the convection in three different regions [the Labrador, Irminger and Greenland-Iceland- Norwegian （GIN） Seas] were analyzed for FGOALS-g2. The variability of convection in the Labrador and Irminger Seas is thermally dominant, while that in the colder GIN Seas can be mainly attributed to salinity changes due to the lower thermal expansion. By comparing the simulation results from FGOALS-g2 and 11 other models, it was found that AMOC variability can be attributed to salinity changes for longer periods （longer than 35 years） and to temperature changes for shorter periods.     

Exploring the dynamics of the disaggregated intercity corporate network in the Yangtze River Delta,China: a relational event approach

Journal of Geographical Systems - There has been a proliferation of studies trying to explain the driving forces behind the formation and evolution of intercity corporate networks. Previous...     

Spatial heterogeneity of cyanobacteria-inoculated sand dunes significantly influences artificial biological soil crusts in the Hopq Desert (China)

Artificial biological soil crusts (ABSCs), formed by inoculating Microcoleus vaginatus Gom. and Scytonema javanicum Born. et Flah. onto the topsoil of desert dunes, proved to be effective tools for the stabilization of moving dunes and promotion of soil fertility. As dominant driving forces in arid habitats, the abiotic environmental conditions of undulating dunes produce a gradient of abiotic stresses on cyanobacteria. Cyanobacteria are considered pioneering phototrophs in early soil crust communities in deserts. In this study, the development of ABSCs under various environmental site conditions was investigated using 16S rRNA-based polymerase chain reaction, denaturing gradient gel electrophoresis (DGGE), and soil property measurements. After inoculation in 2002 and long-term development, patchy moss crusts were observed on the dunes. All of the available sequenced bands in the DGGE gels belonged to Oscillatoriales and Nostocales. The dominant Nostocales genus in the ABSCs was still Scytonema; however, more Oscillatoriales genera were identified, which belonged to Microcoleus and Phormidium. The cyanobacterial compositions of different slope types were significantly distinct (p < 0.05), particularly those from windward slopes. The crusts of the top-dune slopes were more heterogeneous. In addition, the soil physicochemical properties and richness indices of the windward slopes were significantly lower than those of the leeward and interdune slopes (p < 0.05). Compared with uninoculated control dunes, all of the inoculated dunes had far higher biodiversities.     

Decoupling of the East Asian summer monsoon and Indian summer monsoon between 20 and 17 ka

Marine Oxygen Isotope Stage (MIS) 2, with its profound environmental and climatic changes from before the last glacial maximum (LGM) to the last deglaciation, is an ideal period for understanding the evolution of the East Asian summer monsoon (EASM) and Indian summer monsoon (ISM), two Asian monsoon sub-systems. With 875 stable oxygen isotope ratios and 43 ²³⁰Th dates from stalagmites in Sanxing Cave, southwestern China, we construct and interpret a new, replicated, Asian summer monsoon (ASM) record covering 30.9–9.7 ka with decadal resolution. δ¹⁸O records from this site and other reported Chinese caves display similar long-term orbitally dominated trends and synchronous millennial-scale strong and weak monsoonal events associated with climate changes in high northern latitudes. Interestingly, Sanxing δ¹⁸O and Arabian Sea records show a weakening ISM from 22 to 17 ka, while the Hulu and Qingtian records from East and Central China express a 3-ka intensifying EASM from 20 to 17 ka. This decoupling between EASM and ISM may be due to different sensitivities of the two ASM sub-systems in response to internal feedback mechanisms associated with the complex geographical or land-ocean configurations.