Reflection on the first five years of South Africa’s Acoustic Tracking Array Platform (ATAP): status,challenges and opportunities

The Acoustic Tracking Array Platform (ATAP) is a marine science programme that monitors the movements and migrations of inshore marine animals along the South African coastline. Acoustically tagged animals are monitored by an expanded network of approximately 100 automated data-logging acoustic receivers moored at strategic node sites, from Cape Point in the west to the South Africa–Mozambique border in the east. During five years since its inception, in 2011, the ATAP has achieved outstanding progress in terms of the numbers of animals and the variety of species tagged. To date, the ATAP has yielded over 2.6 million detections from more than 700 acoustically tagged animals, representing 27 different species from 20 families, including the African penguin Spheniscus demersus, fishery-at-risk species (e.g. dusky kob Argyrosomus japonicus) and iconic elasmobranchs (e.g. white shark Carcharodon carcharias). Following a period of considerable equipment loss in 2014, refinement of the receiver network was required and the deeper receivers at each site were decommissioned without influencing the integrity of the nationwide array. The platform, managed by the South African Institute for Aquatic Biodiversity, ultimately represents a low-cost method of collecting long-term data that currently benefits approximately 25 researchers from 14 organisations. Case studies are presented to expose the opportunities provided by the ATAP, which will undoubtedly yield new discoveries and provide a greater understanding of the movement patterns and migrations of a wide variety of inshore marine and estuary-associated species.     

Abundance estimates of an isolated population of common bottlenose dolphins Tursiops truncatus in Walvis Bay,Namibia, 2008–2012

The coastal population of common bottlenose dolphins Tursiops truncatus found in Namibia is regionally isolated and unique. This population faces several potential anthropogenic threats, especially in Walvis Bay, including boat-based tourism, a commercial harbour undergoing expansion, and aquaculture for oysters and mussels. Between 2008 and 2012, 238 boat-based surveys were conducted, resulting in 170 encounters with bottlenose dolphins. Overall, group sizes varied from 1 to 45 individuals (mean 10.7). Encounter rates, group sizes and total numbers of animals identified were higher in winter than in summer field seasons. The number, and survival and immigration parameters, of bottlenose dolphins using Walvis Bay was investigated using robust design and Huggins closed-population mark-recapture models. The highest numbers estimated were in the first and last years of the study, with estimates of 74–82 in 2008 and 76–77 in 2012 (numbers identified and upper 95% confidence limits). The only previously available data, from an incomplete study in the early 1990s, suggested that the population was between 100 and 150 individuals at the time. Although no linear trend in population size was obvious during the current study, the clear evidence of isolation, small population size, low annual birth rate, and potential long-term decrease in numbers since the early 1990s is concerning. Further work to collect data on demographic parameters is urgently recommended with a view to obtaining increased protection for this species.     

In Situ Chemical Oxidation of RDX-Contaminated Groundwater with Permanganate at the Nebraska Ordnance Plant

Groundwater beneath the former Nebraska Ordnance Plant (NOP) is contaminated with the explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). The current pump and treat facility is preventing offsite migration but does not offer a short-term solution. Our objective was to quantify the effectiveness of permanganate to degrade RDX in situ. This was accomplished by performing laboratory treatability experiments, aquifer characterization, and a pilot-scale in situ chemical oxidation (ISCO) demonstration. Treatability experiments confirmed that permanganate could mineralize RDX in the presence of NOP aquifer solids. The pilot-scale ISCO demonstration was performed using an extraction-injection well configuration to create a curtain of permanganate between two injection wells. RDX destruction was then quantified as the RDX-permanganate plume migrated downgradient through a monitoring well field. Electrical resistivity imaging (ERI) was used to identify the subsurface distribution of permanganate after injection. Results showed that RDX concentrations temporally decreased in wells closest to the injection wells by 70% to 80%. Observed degradation rates (0.12 and 0.087/d) were lower than those observed under laboratory batch conditions at 11.5 °C (0.20/d) and resulted from lower than projected permanganate concentrations. Both ERI and spatial electrical conductivity measurements verified that permanganate distribution was not uniform throughout the 6.1-m (20 feet) well screens and that groundwater sampling captured both treated and nontreated groundwater during pumping. Although heterogeneous flow paths precluded a uniform permanganate distribution, pilot-scale results provided proof-of-concept that permanganate can degrade RDX in situ and support permanganate as a possible remedial treatment for RDX-contaminated groundwater.     

Genetic stock structure of white steenbras Lithognathus lithognathus (Cuvier, 1829), an overexploited fishery species in South African waters

White steenbras Lithognathus lithognathus (Teleostei: Sparidae) is an overexploited marine fish species endemic to South Africa. Overexploitation in recreational, subsistence and commercial fisheries has resulted in stock collapse and the need for improved management of the species. Adults are thought to undertake large-scale annual spawning migrations, yet studies of their movement indicate low levels of connectivity among coastal regions. To address this, mitochondrial DNA sequencing and genotyping of microsatellite loci in the nuclear genome were conducted to determine the genetic stock structure and level of gene flow in this species. Genetic diversity was high throughout the species’ core distribution, with no evidence of isolation by way of distance or localised spawning. Low, non-significant pairwise fixation indices (F_ST, R_ST and Jost’s D_est) indicated low genetic differentiation and high levels of gene flow. The observed results, and agreement between mitochondrial and microsatellite DNA, confirm that white steenbras exists as a single genetic stock with high levels of gene flow throughout its distribution.     

广东东莞地区中侏罗统塘厦组凝灰质沉积物的元素地球化学特征及构造背景

东莞地区中侏罗统塘厦组为富含凝灰质的湖泊沉积。对样品进行全岩分析和ICP-MS微量元素分析,并计算Sr/Ba、B/Ga和Ca/Mg比值,其比值变化与古盐度变化成正相关,特征显示塘厦组为咸水湖泊沉积,由下至上古盐度逐渐降低,水体深度也逐渐变浅。对样品进行ICP-MS稀土元素分析,计算各样品δCe值和(La/Yb)_N比值,δCe值介于0.83 ~ 1.31之间,(La/Yb)_N值均明显大于1或小于1,其特征反映湖泊沉积物沉积速率较低,只在塘厦组底部和上部出现相对高的沉积。元素P和Sr/Cu值反映其富集与迁移,受到气候的控制。元素P平均值在0.205×10^-2; Sr/Cu平均值大于4.0×10^-6,在中晚期出现最低值1.42×10^-6,这是塘厦组以干热气候为主,中晚期出现了短暂温湿气候所造成的。塘厦组为干热气候下缓慢沉积的咸水湖泊沉积。Zr-Th、La-Th-Sc判别图解、稀土元素特征及区域构造分析,显示中侏罗世东莞地区构造背景为活动大陆边缘的弧后盆地。受伸展作用影响,本区发育弧后裂谷型湖盆。泥岩La/Yb-∑REE源岩判别图解显示,源岩为玄武岩、花岗岩和沉积岩。     

Effective velocity power laws for electron-neutral collision frequencies

Calculations of electron transport coefficients in the ionosphere are simplified if the electron-neutral collision frequency can be expressed as a power law in velocity. A new method for determining the effective power law representation for electron-neutral collision frequencies of arbitrary velocity dependence is presented. This method is applied to ionospheric gases in a model calculation. Comparison with similar results of Schunk and Walker and with exact calculations of transport coefficient correction factors demonstrates this technique to be more accurate than the other. Effective power law indexes are computed for both Banks' and Itikawa's collision frequencies. Relative differences between these indexes are found to be considerably larger than the differences between the collision frequencies themselves; however, the effects on transport calculations are shown to be smaller.     

Inter-organizational coordination in extreme events: The World Trade Center attacks, September 11, 2001

This paper addresses the problem of inter-organizational coordination in response to extreme events. Extreme events require coordinated action among multiple actors across many jurisdictions under conditions of urgent stress, heavy demand and tight time constraints. The problem is socio-technical in that the capacity for inter-organizational coordination depends upon the technical structure and performance of the information systems that support decision making among the participating organizations. Interactions among human managers, computers and organizations under suddenly altered conditions of operation are complex and not well understood. Yet, coordinating response operations to extreme events is an extraordinarily complex task for public and nonprofit managers. This paper will analyze the interactions among public, private and nonprofit organizations that evolved in response to the 11 September 2001 attacks, examining the relationships among organizations in terms of timely access to information and types of supporting infrastructure. The performance of the inter-organizational system is examined in the context of the events of 11 September 2001 from the theoretical perspective of complex adaptive systems. A model of auto-adaptation is proposed for implementation to improve inter- organizational performance in extreme events. This model is based on the concept of individual, organizational and collective learning in environments exposed to recurring risk, guided by a shared goal. Such a model requires public investment in the development of an information infrastructure that can support the intense demand for communication, information search, exchange and feedback that characterizes an auto-adaptive system.     

Latitudinal gradients and poleward expansion of mangrove ecosystems in South Africa: 50 years after Macnae’s first assessment

Mangroves occur in South African estuaries at their poleward distribution limits, extending into temperate habitats. In 1963, William Macnae published the first comprehensive assessment of mangrove swamps in South Africa and made firsthand observations of these mangrove ecosystems. This article reassesses South African mangrove habitats, highlighting changes since Macnae’s assessment, through a literature review of research done in the past 50 years and using the results of a dedicated mangrove survey spanning 2012–2017. Until now, changes have been recorded mostly for mangrove vegetation, including a change in mangrove cover and a poleward shift of mangrove species. While some mangrove-associated fauna have disappeared from most sites (e.g. the gastropod Terebralia palustris), others, such as fiddler crabs, have spread farther south. The effects of decreasing diversity with an increase in latitude were not observed along the South African coast. Instead, habitat quality and estuarine mouth state seem to exert greater influence on species diversity in the mangroves, and a poleward shift in species distribution is now evident not just for the mangrove flora but for the fauna as well. South African mangrove research needs to include a continuous monitoring plan, especially if we are to contribute to global knowledge on blue carbon, the effects of sea-level rise, and the resilience of the mangrove ecosystem.     

Quantifying the largest aggregation of giant trevally Caranx ignobilis (Carangidae) on record: implications for management

The giant trevally Caranx ignobilis (Forsskål) is an important apex predatory fish typically associated with coral reef communities. It is prized in recreational and commercial fisheries, yet little is known about its aggregation dynamics and susceptibility to fishing pressure. This study reports on a previously undocumented aggregation of mature giant trevally observed over a period of eight years (2010–2017) at Ponta do Ouro Partial Marine Reserve in southern Mozambique. The aggregation is one of the few recorded for this carangid in the western Indian Ocean and represents the first subtropical aggregation of giant trevally. The aggregation is also the largest recorded for this species, with up to 2 413 individuals representing an estimated biomass of approximately 30 tonnes. The size and predictability of this annual aggregation make it vulnerable to overexploitation and point towards the need for an appropriate conservation management strategy.     

Conservation status of New Zealand marine mammals (suborders Cetacea and Pinnipedia), 2009

The conservation status of New Zealand (NZ) marine mammals (suborders Cetacea and Pinnipedia) is reappraised using the 2008 version of the NZ Threat Classification System. The list comprises 56 taxa (named species or subspecies, and as yet unnamed forms or types) in the following categories: Threatened—eight taxa (five Nationally Critical and three Nationally Endangered); Vagrant—six taxa; Migrant—20 taxa; and Data Deficient—13 taxa. A further nine taxa are listed as Not Threatened. Relative to the previous listing, the threat status of two species worsened: the NZ sea lion (Phocarctos hookeri) was uplisted to Nationally Critical and the bottlenose dolphin (Tursiops truncatus) was uplisted to Nationally Endangered. No species was considered to have an improved status. With the uplisting of the NZ sea lion and the continued listing of the Hector's dolphin (Cephalorhynchus hectori hectori) as Endangered and Maui's dolphin (C. hectori maui) as Nationally Critical, all three endemic NZ marine mammals are now considered threatened with extinction. We considered future research or management actions that would allow the downlisting of the eight taxa currently listed as Threatened.