Adaptations and lifestyle in polar marine environments: a biological challenge for the study of fish evolution

The climatic features of Antarctic waters are more extreme and constant than in the Arctic. The Antarctic has been isolated and cold longer than the Arctic. The polar ichthyofaunas differ in age, endemism, taxonomy, zoogeographic distinctiveness and physiological tolerance to environmental parameters. The Arctic is the connection between the Antarctic and the temperate-tropical systems. Paradigmatic comparisons of the pathways of adaptive evolution of fish from both poles address the oxygen-transport system and the antifreezes of northern and southern species, (i) Haemoglobin evolution has included adaptations at the biochemical, physiological and molecular levels. Within the study of the molecular bases offish cold adaptation, and taking advantage of the information on haemoglobin amino acid sequence, we analysed the evolutionary history of the α and β globins of Antarctic, Arctic and temperate haemoglobins as a basis for reconstructing phylogenetic relationships. In the trees, the constant physico-chemical conditions of the Antarctic waters are matched by clear grouping of globin sequences, whereas the variability typical of the Arctic ecosystem corresponds to high sequence variation, reflected by scattered intermediate positions between the Antarctic and non-Antarctic clades. (ii) Antifreeze (glyco)proteins and peptides allow polar fish to survive at sub-zero temperatures. In Antarctic Notothenioidei the antifreeze gene evolved from a trypsinogen-like serine protease gene. In the Arctic polar cod the genome contains genes which encode nearly identical proteins, but have evolved from a different genomic locus–a case of convergent evolution.     

The role of the ocean feedback on Asian and African monsoon variations at 6 kyr and 9.5 kyr BP

The role of ocean feedback on monsoon variations at 6 and 9.5 kyr Before Present (BP) compared to present-day is investigated by using sets of simulations computed with the IPSL–CM4 ocean–atmosphere coupled model and simulations with the atmospheric model only with the SST prescribed to the present-day simulation for the coupled model. This work is complementary to the study by Marzin and Braconnot (2009) who have analyzed in detail the response of Indian and African monsoons to changes in insolation at 6 and 9.5 kyr BP using the IPSL–CM4 coupled model. The monsoon rainfall was intensified at 6 and 9.5 kyr BP compared to 0 kyr BP as a result of the intensified seasonal cycle of insolation in the Northern Hemisphere. In this paper, the impact of the ocean feedback is analysed for the Indian, East-Asian and African monsoons. The response of the ocean to the 6 and 9.5 kyr BP insolation forcing shares similarities between the two periods, but we highlight local differences and a delay in the response of the surface ocean between 6 and 9.5 kyr BP. The ocean feedback is shown to be positive for the early stage of the African monsoon. A dipole of SST in the tropical Atlantic favouring the earlier build-up of the monsoon in the 6 and 9.5 kyr BP coupled simulations. However, it is strongly negative for the Indian and East Asian monsoons, and of stronger amplitude at 9.5 than at 6 kyr BP over India. In these Asian regions, the convection is more active over the ocean than over the continent during the late monsoon season due to the ocean feedback. The results are consistent with previous studies about 6 kyr BP climate. In addition, it is shown that the ocean feedback is not sufficient to explain the relative amplifications of the different monsoon systems within the three periods of the Holocene, but that the mechanisms such as the effect of the precession on the seasonal cycle of monsoons as discussed in Marzin and Braconnot (2009) are more plausible.     

Sensitivity of simulated flow fields and bathymetries in meandering channels to the choice of a morphodynamic model

Morphodynamic models are used by river practitioners and scientists to simulate geomorphic change in natural and artificial river channels. It has long been recognized that these models are sensitive to the choice of parameter values, and proper calibration is now common practice. This paper investigates the less recognized impact of the choice of the model itself. All morphodynamic models purport to simulate the same flow and sediment dynamics, often relying on the same governing equations. Yet in solving these equations, the models have different underlying assumptions, for example regarding spatial discretization, turbulence, sediment inflow, lateral friction, and bed load transport. These differences are not always considered by the average model user, who might expect similar predictions from calibrated models. Here, a series of numerical simulations in meandering channels was undertaken to test whether six morphodynamic codes (BASEMENT, CCHE‐2D, NAYS, SSIIM‐1, TELEMAC‐2D and TELEMAC‐3D) would yield significantly different equilibrium bathymetries if subjected to identical, initial flow conditions. We found that, despite producing moderately similar velocity patterns on a fixed‐flat bed (regression coefficient r of 0.77 ± 0.20), the codes disagree substantially with respect to simulated bathymetries (r = 0.49 ± 0.31). We relate these discrepancies to differences in the codes' assumptions. Results were configuration specific, i.e. codes that perform well for a given channel configuration do not necessarily perform well with higher or lower sinuosity configurations. Finally, limited correlation is found between accuracy and code complexity; the inclusion of algorithms that explicitly account for the effects of local bed slope and channel curvature effects on transport magnitude and direction does not guarantee accuracy. The range of solutions obtained from the evaluated codes emphasizes the need for carefully considering the choice of code. We recommend the creation of a central repository providing universal validation cases and documentation of recognized fluvial codes in commonly studied fluvial settings. Copyright © 2016 John Wiley & Sons, Ltd.     

Seismic response of nonstructural components in case of nonlinear structures based on floor response spectra method

This paper investigates the response of nonstructural components in the presence of nonlinear behavior of the primary structure using floor response spectra method (FRS). The effect of several parameters such as initial natural frequency of the primary structure, natural frequency of the nonstructural components (subsystem), strength reduction factor and hysteretic model have been studied. A database of 164 registered ground acceleration time histories from the European Strong-Motion Database is used. Results are presented in terms of amplification factor and resonance factor. Amplification factor quantifies the effect of inelastic deformations of the primary structure on subsystem response. Resonance factor quantifies the variation of the subsystem response considering the primary structure acceleration. Obtained results differed from precedent studies, particularly for higher primary structure periods. Values of amplification factor are improved. Obtained results of resonance factor highlight an underestimation of peak values according to current design codes such as Eurocode 8. Therefore a new formulation is proposed.     

Relationships between water flow rate and geophysical measurements in an alluvial aquifer

Our study focuses on the potential usefulness of surface geophysical data to constrain the water content within an alluvial aquifer. On a study area where two wells have been drilled, we have performed several geophysical measurements, including ground penetrating radar, DC resistivity prospecting, seismic refraction survey and magnetic resonance soundings. From these data, we estimated several parameters, namely, the water height in the deposits, the effective porosity, the water content, the permeability, and the transmissivity of alluvial deposits. These physical parameters allow us to characterize the alluvial deposits in order to constrain the estimation of the potential water flow. The lithology and water flow rate known from the wells enabled us to compare geophysical results obtained in a high water flow rate zone to those in a low water flow rate zone. Correlation has been found between the water flow rate observed in both wells and the geophysical data obtained in the vicinity of these wells.     

A comparison of peak and plate electrodes in electrical resistivity tomography: application to the chalky groundwater of the Beauvais aquifer (northern part of the Paris basin,France)

Electrical resistivity tomography was used in order to explore an experimental site of the LaSalle Beauvais Polytechnic Institute (France). The test was conducted along a profile line of 315 m length, using 64 electrodes deployed at an inter‐electrode spacing of 5 m, and the data were recorded using gradient, Wenner and pole–dipole arrays. The performance of plate electrodes (non‐conventional flat‐based) is compared with the performance of peak electrodes (conventional spike). The hydrogeophysical investigation of the chalk aquifer system of Beauvais shows that the performance of plate electrodes is satisfactory, leading to inversions of small root‐mean‐square errors. Peak and the plate electrodes were tested before and after injection of a salt tracer in the piezometer of the experimental site. The study demonstrates the usefulness of plate electrodes (efficient, less time consuming) and the possibility of aquifer characterization by a salt tracer. Copyright © 2010 John Wiley & Sons, Ltd.     

The vibrational spectrum of calcite (CaCO<Subscript>3</Subscript>): an ab initio quantum-mechanical calculation

The vibrational spectrum of calcite (CaCO₃) is evaluated at an ab initio periodic quantum-mechanical level by using the CRYSTAL package. A localized basis set of Gaussian-type functions and the B3LYP hybrid Hamiltonian are adopted. The dynamical matrix is obtained by differentiating numerically the analytical first derivatives of the energy. The accuracy with respect to all computational parameters is documented. The calculated frequencies are compared with available IR and RAMAN data (16 and 5 peaks, respectively), the mean absolute error being less than 12 cm^–1 (frequencies range from 100 to 1600 cm^–1). Overall, the agreement with experiment is very satisfactory, and shows that simulation can produce at a relatively low cost the full spectra of crystalline compounds of mineralogical interest.     

The Iberian Pyrite Belt: a mineralized system dismembered by voluminous high-level sills

The Iberian Pyrite Belt is a world-ranking massive sulphide province in which a reassessment of the palaeovolcanology has dramatically changed understanding of the source of metals and mechanism of ore formation. In the northern sector, the deposits are hosted by a sill–sediment complex in which more than 90% of the sills post-date the sulphide sheets. Because of a very high sill/sediment ratio, these late intrusions dominate the host succession and have severely disrupted the post-mineralization configuration thus obscuring the true genetic relationships. For example, some oxide deposits have been separated by hectometric sills from sulphide deposits they originally capped, creating seemingly totally independent mineralizing systems. In addition, stratiform sulphide sheets without underlying stockworks are not necessarily allochthonous. An early timing for the mineralization with respect to volcanism means that metals had to be predominantly sourced from the sedimentary basin and the continental crust below the volcanogenic sequence.     

Liquefied vs stratified sediment mobilization processes: Insight from the South of the Barbados accretionary prism

This paper discusses the nature and origin of subsurface sediment mobilization processes in deep marine clay-rich environments. In the studied area of the southern Barbados accretionary prism, new geophysical acquisitions have emphasized the spectacular widespread development of mud volcanoes that are well-developed along ramp anticlines and along sigmoidal rises with trends that are oblique to the axes of the main folds of the accretionary wedge. On some active mud volcanoes, heat-flow measurements show high positive anomalies related to high fluxes of mud transfer. The mobilized solid fraction expelled by the mud volcanoes does not originate from a unique source bed but from various formations pierced by the mud conduits and is driven by the water phase. The area studied also exhibits trends of structures corresponding to sub-circular massive local uplifts of deformed but well-preserved stratified sediments (turbidites and hemipelagics). No piercing shale diapirs have been encountered in this area. Some of these local uplift structures are complicated by the development of collapses, calderas, and superimposed mud volcanoes. Mud volcanism corresponds fundamentally to fluid displacement (water and gas), whereas massive sedimentary uplift corresponds to large vertical displacements of stratified solid levels but for which the deep cause could be partly the intrusion of mud plugs. Both are dynamic phenomena controlled by the development of overpressure at depth, contributing to sedimentary mobilizations.     

Internal and forced variability along a section between Greenland and Portugal in the CLIPPER Atlantic model

Numerical models are used to estimate the meridional overturning and transports along the paths of two hydrographic cruises, carried out in 1997 and 2002 from Greenland to Portugal. We have examined the influence of the different paths of the two cruises and found that it could explain 0.4 to 2 Sv of difference in overturning (the precise value is model-dependent). Models show a decrease in the overturning circulation between 1997 and 2002, with different amplitudes. The CLIPPER ATL6 model reproduces well the observed weakening of the overturning in density coordinates between the cruises; in the model, the change is due to the combination of interannual and high-frequency forcing and internal variability associated with eddies and meanders. Examination of the -coordinate overturning reveals model–data discrepancies: the vertical structure in the models does not change as much as the observed one. The East Greenland current variability is mainly wind-forced in the ATL6 model, while fluctuations due to eddies and instabilities explain a large part of the North Atlantic Current variability. The time-residual transport of dense water and heat due to eddy correlations between currents and properties is small across this section, which is normal to the direction of the main current.