Sand dunes as a major proximal dust source for late Pleistocene loess in the Negev Desert, Israel

Grain size analyses of three hilltop, primary eolian loess sequences in the Negev desert, southern Israel, show a bimodal grain-size distribution at 50-60 μm and 3-8 μm. Using analyses of mineralogy and OSL ages we demonstrate that the coarse mode is composed mostly of quartz grains and its relative magnitude increases regionally with time, suggesting an enhancement of a time-transgressive proximal dust source compared to a distal, Saharan fine-grain dust. The only proximal dust source for large amount of coarse silt quartz grains is the sands that advanced into Sinai and the Negev concurrently with the loess accretion during the late Pleistocene as a result of the exposure of the Mediterranean shelf. We therefore propose that the coarse silt quartz grains were formed through eolian abrasion within the margins of an advancing sand sea. This relationship between desert sand seas as a source for proximal coarse dust and desert margin loess deposits can be applicable to other worldwide deserts such as Northern Africa, China and Australia.     

Flow conditions of the 2004 Indian Ocean tsunami in Thailand,inferred from capping bedforms and sedimentary structures

The 2004 Indian Ocean tsunami deposited a sheet of sand with surficial bedforms at the Andaman coast of Thailand. Here we show the recognition of bedforms and the key internal sedimentary structures as criteria of the tsunami supercritical flow condition. The presence of well‐preserved capping bedforms implied a dominant tsunami inflow. Sets of internal sedimentary structures including parallel lamination, seaward and landward inclined‐laminations, and downstream dipping laminae indicated antidune structures that were generated by a supercritical flow current in a depositional stage during the inflow. A set of seaward dipping cross‐laminations containing sand with mud drape on the surface of one depositional layer are a unique indication of an outflow structure. A majority of deposits show normal grading, but in some areas, localized reverse grading was also observed. The recognition of these capping bedforms and determination of the internal sedimentary structures provides new key criteria to help derive a better understanding of tsunami flow conditions.     

Seasonal and interannual variation of the phytoplankton and copepod dynamics in Liverpool Bay

The seasonal and interannual variability in the phytoplankton community in Liverpool Bay between 2003 and 2009 has been examined using results from high frequency, in situ measurements combined with discrete samples collected at one location in the bay. The spring phytoplankton bloom (up to 29.4 mg chlorophyll m⁻³) is an annual feature at the study site and its timing may vary by up to 50 days between years. The variability in the underwater light climate and turbulent mixing are identified as key factors controlling the timing of phytoplankton blooms. Modelled average annual gross and net production are estimated to be 223 and 56 g C m⁻² year⁻¹, respectively. Light microscope counts showed that the phytoplankton community is dominated by diatoms, with dinoflagellates appearing annually for short periods of time between July and October. The zooplankton community at the study site is dominated by copepods and use of a fine mesh (80 μm) resulted in higher abundances of copepods determined (up to 2.5 × 10⁶ ind. m⁻²) than has previously reported for this location. There is a strong seasonal cycle in copepod biomass and copepods greater than 270 μm contribute less than 10% of the total biomass. Seasonal trends in copepod biomass lag those in the phytoplankton community with a delay of 3 to 4 months between the maximum phytoplankton biomass and the maximum copepod biomass. Grazing by copepods exceeds net primary production at the site and indicates that an additional advective supply of carbon is required to support the copepod community.     

Alteration of gene expression profiles in the brain of Japanese medaka (Oryzias latipes) exposed to KC-400 or PCB126

Polychlorinated biphenyls (PCBs) are known as neurotoxic chemicals and possibly alter animal behavior. We previously reported that PCB-exposure induced abnormal schooling behavior in Japanese medaka (Oryzias latipes). This abnormal behavior might be caused by the functional alteration of central or terminal nervous system. To understand the mechanism(s) of behavioral change by PCB-exposure, we analyzed the gene expression profiles in the brain of medaka exposed to 3,3′,4,4′,5-pentachlorobiphenyl (PCB126) or a PCB mixture (Kanechlor-400: KC-400) using a cDNA microarray that we constructed. Twelve FLF-II strain medaka (six individuals per treatment) were dietary exposed to PCB126 (0.01 μg/g b.w./day) or KC-400 (1 μg/g b.w./day) for three weeks. For the control, six fish were fed a control diet. After the exposure period, fish were dissected, and the brain samples were collected. The samples from control fish were pooled and used as a common reference in the microarray experiment. Microarray data were normalized by the LOWESS method, and we screened the genes whose expression levels were altered more than 1.5-fold. Gene expression profiling showed 97 down-regulated and 379 up-regulated genes in the brain of medaka exposed to PCB126. KC-400 exposure suppressed 15 genes and induced 266 genes in medaka brain. Among these genes, the expression levels of 7 and 188 genes were commonly down- or up-regulated, respectively in both treatment groups. On the other hand, 31 gene expressions were significantly different between PCB126 and KC-400 treatment groups, and three out of 31 genes were received opposite effects. In addition, the microarray data showed that thyroid hormone-responsive genes were up-regulated by PCB-exposure, which may imply that PCBs or their metabolites mimic thyroid hormone effects in the brain of PCB-exposed medaka.     

Navy sonar and cetaceans: just how much does the gun need to smoke before we act?

Cetacean mass stranding events associated with naval mid-frequency sonar use have raised considerable conservation concerns. These strandings have mostly involved beaked whales, with common pathologies, including "bubble lesions" similar to decompression sickness symptoms and acoustic traumas. However, other cetacean species have also stranded coincident with naval exercises. Possible mechanisms for the strandings include a behavioral response that causes deep divers to alter their diving behavior, which then results in decompression sickness-like impacts. Current mitigation measures during military exercises are focused on preventing auditory damage (hearing loss), but there are significant flaws with this approach. Behavioral responses, which occur at lower sound levels than those that cause hearing loss, may be more critical. Thus, mitigation measures should be revised. A growing number of international bodies recognize this issue and have urged increasing scrutiny of sound-producing activities, but many national jurisdictions have resisted calls for increased protection.     

Alteration of gene expression profiles in the brain of Japanese medaka (Oryzias latipes) exposed to KC-400 or PCB126

Polychlorinated biphenyls (PCBs) are known as neurotoxic chemicals and possibly alter animal behavior. We previously reported that PCB-exposure induced abnormal schooling behavior in Japanese medaka (Oryzias latipes). This abnormal behavior might be caused by the functional alteration of central or terminal nervous system. To understand the mechanism(s) of behavioral change by PCB-exposure, we analyzed the gene expression profiles in the brain of medaka exposed to 3,3',4,4',5-pentachlorobiphenyl (PCB126) or a PCB mixture (Kanechlor-400: KC-400) using a cDNA microarray that we constructed. Twelve FLF-II strain medaka (six individuals per treatment) were dietary exposed to PCB126 (0.01 microg/g b.w./day) or KC-400 (1 microg/g b.w./day) for three weeks. For the control, six fish were fed a control diet. After the exposure period, fish were dissected, and the brain samples were collected. The samples from control fish were pooled and used as a common reference in the microarray experiment. Microarray data were normalized by the LOWESS method, and we screened the genes whose expression levels were altered more than 1.5-fold. Gene expression profiling showed 97 down-regulated and 379 up-regulated genes in the brain of medaka exposed to PCB126. KC-400 exposure suppressed 15 genes and induced 266 genes in medaka brain. Among these genes, the expression levels of 7 and 188 genes were commonly down- or up-regulated, respectively in both treatment groups. On the other hand, 31 gene expressions were significantly different between PCB126 and KC-400 treatment groups, and three out of 31 genes were received opposite effects. In addition, the microarray data showed that thyroid hormone-responsive genes were up-regulated by PCB-exposure, which may imply that PCBs or their metabolites mimic thyroid hormone effects in the brain of PCB-exposed medaka.     

Bathymetry of Lake Lisan controls late Pleistocene and Holocene stream incision in response to base level fall

This paper examines the millennial-scale evolution of the longitude profile of Nahal (Wadi) Zin in the Dead Sea basin in the northern Arava valley, Israel. Nahal Zin has incised ~ 50 m into relatively soft late Pleistocene Lake Lisan sediments. Incision was forced by the regressive (> 10 km) lake level fall of a total of > 200 m of Lake Lisan from its highest stand at ~ 25 ka and exposure of the lake-floor sediments to fluvial and coastal processes. Alluvial cut terraces of the incising channel are well preserved along the 17.5 km of the lowermost reach of Nahal Zin. At its outlet into the Dead Sea basin, Nahal Zin deposited a Holocene alluvial fan at the base of a 10–80 m high escarpment in unconsolidated sediments. The escarpment is associated with the Amazyahu fault, which forms the southern structural boundary of the present Dead Sea basin. Geomorphic mapping, optically stimulated luminescence (OSL) ages, and soil stratigraphy allowed correlation of terrace remnants and reconstruction of several past longitudinal profiles of Nahal Zin and its incision history. Together with the published lake level chronology, these data provide an opportunity to examine stream incision related to base level lowering at a millennial scale. OSL ages of the terraces fit relatively well with the established lake level chronology and follow its regression and fall. For a few thousands of years the longitudinal profile response to the lake level fall was downstream lengthening onto the exposed former lake bed. Most of the incision (~ 40 m) occurred later, when the lake level reached the top of the Amazyahu fault escarpment and continued to drop. The incision was a relatively short episode at about 17 ka and cut through this escarpment almost to its base. The fast incision, its timing, and the profiles of the incising channels indicate that the escarpment was an underwater feature and was not formed after the lake retreated.This fairly simple scenario of regressive lake level fall and knickpoint exposure and incision is modeled here using a one-dimensional numerical incision model based on a linear diffusion equation. The calculated diffusion coefficient fits earlier results and data obtained from other streams in the area and confirms the upscaling of this simple model to the millennial scale.     

Measuring the hydraulic conductivity of shallow submerged sediments

The hydraulic conductivity of submerged sediments influences the interaction between ground water and surface water, but few techniques for measuring K have been described with the conditions of the submerged setting in mind. Two simple, physical methods for measuring the hydraulic conductivity of submerged sediments have been developed, and one of them uses a well and piezometers similar to well tests performed in terrestrial aquifers. This test is based on a theoretical analysis that uses a constant-head boundary condition for the upper surface of the aquifer to represent the effects of the overlying water body. Existing analyses of tests used to measure the hydraulic conductivity of submerged sediments may contain errors from using the same upper boundary conditions applied to simulate terrestrial aquifers. Field implementation of the technique requires detecting minute drawdowns in the vicinity of the pumping well. Low-density oil was used in an inverted U-tube manometer to amplify the head differential so that it could be resolved in the field. Another technique was developed to measure the vertical hydraulic conductivity of sediments at the interface with overlying surface water. This technique uses the pan from a seepage meter with a piezometer fixed along its axis (a piezo-seep meter). Water is pumped from the pan and the head gradient is measured using the axial piezometer. Results from a sandy streambed indicate that both methods provide consistent and reasonable estimates of K. The pumping test allows skin effects to be considered, and the field data show that omitting the skin effect (e.g., by using a single well test) can produce results that underestimate the hydraulic conductivity of streambeds.     

Genetic diversity and metal tolerance of two marine species: a comparison between populations from contaminated and reference sites

Long-term contamination of the marine environment surrounding a lead smelter offered a unique opportunity to examine how pollutants might have acted to alter genetic characteristics of populations of organisms in the receiving system. This study used random amplified polymorphic DNA analysis to compare the genetic diversity of populations of the prawn, Leander intermedius, and the isopod, Platynympha longicaudata from the smelter discharge site with reference populations. The genetic diversity of the prawn population from the smelter discharge site (Port Pirie) was lower than that found in one reference population, and not significantly different from the other two reference populations. Genetic diversity of the Port Pirie population of isopods was found to be significantly lower than that of all reference populations. Prawns and isopods were also exposed to metal mixtures in the laboratory in a similar ratio to that found in seston near the smelter effluent discharge site. Both pre-exposed and reference populations of prawns tolerated elevated levels of metals and exhibited no significant difference in response. This contrasted with the isopods, with the pre-exposed isopod population showing greater tolerance to elevated metal levels compared with the reference population. These results highlight the need to include a number of reference populations for comparative purposes in genetic diversity studies, and the need to assess the influence of pollution on the genetic diversity of more than one species if genetic diversity analyses are to be used to gauge remediation success.