Evidence for microbiological manganese oxidation in the river Tamar Estuary, South West England

Water samples from the Tamar Estuary oxidized manganese when supplemented with Mn²⁺ (2 mgl⁻¹). The rates of oxidation were depressed in the presence of various metabolic inhibitors. The effect of Mn²⁺ and temperature on the rate of manganese oxidation suggested that a biological process was largely responsible for converting Mn²⁺ to Mn⁴⁺. Rates of manganese oxidation were much higher in freshwater (3·32 μgl⁻¹ h⁻¹ in water containing 30 mgl⁻¹ of suspended matter) than in saline water (0·7 μgl⁻¹ h⁻¹ in water of salinity 32‰) containing the same amount of particulate matter. The rate of manganese oxidation was proportional to the particulate load (up to 100 mgl⁻¹ particulates).     

Effects of CO2 on benthic biota: An in situ benthic chamber experiment in Storfjorden (Norway)

Carbon capture and storage (CCS) methods, either sub-seabed or in ocean depths, introduces risk of CO₂ leakage and subsequent interaction with the ecosystem. It is therefore important to obtain information on possible effects of CO₂. In situ CO₂ exposure experiments were carried out twice for 10 days during 2005 using a Benthic Chamber system at 400 m depth in Storfjorden, Norway. pCO₂ in the water above the sediment in the chambers was controlled at approximately 500, 5000 and 20,000 μatm, respectively. This article describes the experiment and the results from measured the biological responses within the chamber sediments. The results show effects of elevated CO₂ concentrations on biological processes such as increased nanobenthos density. Methane production and sulphate reduction was enhanced in the approximately 5000 μatm chamber.     

Rock warming and drying under simulated intertidal conditions,part II: weathering and biological influences on evaporative cooling and near‐surface micro‐climatic conditions as an example of biogeomorphic ecosystem engineering

The way in which rocks and engineering materials heat‐up and dry‐out in the intertidal zone is of relevance to both weathering and ecology. These behaviours can be measured in the laboratory under controlled conditions designed to replicate those occurring in the field. Previous studies have demonstrated differences in thermal behaviours between rock types and through time as a result of soiling in terrestrial environments, but the influence of weathering and colonization on rock behaviours in the intertidal zone has not been previously assessed. We measured the warming and drying of blocks of rock (limestone and granite) and marine concrete during ‘low‐tide’ events simulated in the laboratory, before and after a period of exposure (eight months) on rock platforms in Cornwall, UK. As well as differences between the material types, temperatures of control (unexposed) and field‐exposed blocks differed in the order of 1 to 2 °C. Drying behaviours were also different after field exposure. Differences during the first few hours of exposure to air and heat were attributed to discolouration and albedo effects. Over longer periods of time, changes in the availability of near‐surface pore water as a result of micro‐scale bioerosion of limestone and the development of bio‐chemical crusts on marine concrete [observed using scanning electron microscopy (SEM)] are suggested as mechanisms enhancing and reducing, respectively, the efficiency of evaporative cooling. The retention of moisture by epilithic biofilms may also influence thermal and drying behaviours of granite. These observations represent one of the first examples of cross‐scalar biogeomorphic linkages in the intertidal zone. The significance of the results for the subsequent efficiency of weathering, and near‐surface micro‐climatic conditions experienced by colonizing organisms is discussed. The involvement of microorganisms in the creation of more (or less) ecologically stressful conditions through the alteration of substratum geomorphic properties and behaviours is suggested as an example of ‘biogeomorphic ecosystem engineering’. Copyright © 2011 John Wiley & Sons, Ltd.     

Liquefaction mitigation in silty soils using composite stone columns and dynamic compaction

The objective of this study is to develop an analytical methodology to evaluate the effectiveness ofvibro stone column (S. C.) and dynamic compaction (D.C.) techniques supplemented with wick drains to densify and mitigate liquethctionin saturated sands and non-plastic silty soils. It includes the following: (i) develop numerical models to simulate and analyze soil densification during S.C. installation and D.C. process, and (ii) identify parameters controlling post-improvement soil density in both cases, and (iii) develop design guidelines for densification of silty soils using the above techniques. An analytical procedure was developed and used to simulate soil response during S.C. and D.C. installations, and the results were compared with available case history data. Important construction design parameters and soil properties that affect the effectiveness of these techniques, and construction design choices suitable for sands and non-plastic silty soils were identified. The methodology is expected to advance the use of S.C. and DC. in silty soils reducing the reliance on expensive field trials as a design tool. The ultimate outcome of this research will be design charts and design guidelines for using composite stone columns and composite dynamic compaction techniques in liquefaction mitigation of saturated silty soils.     

Indirect Boundary Element Method applied to fluid–solid interfaces

In this paper scattering of elastic waves in fluid–solid interfaces is investigated. We use the Indirect Boundary Element Method to study this wave propagation phenomenon in 2D models. Three models are analyzed: a first one with an interface between two half-spaces, one fluid on the top part and the other solid in the bottom; a second model including a fluid half-space above a layered solid; and finally, a third model with a fluid layer bounded by two solid half-spaces. The source, represented by Hankel's function of the second kind, is always applied in the fluid. This indirect formulation can give to the analyst a deep physical insight on the generated diffracted waves because it is closer to the physical reality and can be regarded as a realization of Huygens' principle. In any event, mathematically it is fully equivalent to the classical Somigliana's representation theorem. In order to gauge accuracy we test our method by comparing with an analytical solution known as Discrete Wave Number. A near interface pulse generates scattered waves that can be registered by receivers located in the fluid and it is possible to infer wave velocities of solids. Results are presented in both time and frequency domain, where several aspects related to the different wave types that emerge from this kind of problems are pointed out.     

Effects of self-attraction and loading at a regional scale: a test case for the Northwest European Shelf

The impact of the self-attraction and loading effect (SAL) in a regional 2D barotropic tidal model has been assessed, a term with acknowledged and well-understood importance for global models but omitted for boundary-forced, regional models, for which the implementation of SAL is non-trivial due to its non-local nature. In order to understand the impact of the lack of SAL effects in a regional scale, we have forced a regional model of the Northwest European Continental Shelf and the North Sea (continental shelf model (CSM)) with the SAL potential field derived from a global model (GTSM), in the form of a pressure field. Impacts have been studied in an uncalibrated setup and with only tidal forcing activated, in order to isolate effects. Additionally, the usually adopted simple SAL parameterization, in which the SAL contribution to the total tide is parameterized as a percentage of the barotropic pressure gradient (typically chosen 10%), is also implemented and compared to the results obtained with a full SAL computation. A significant impact on M2 representation is observed in the English Channel, Irish Sea and the west (UK East coast) and south (Belgian and Dutch Coast) of the North Sea, with an impact of up to 20 cm in vector difference terms. The impact of SAL translates into a consistent M2 amplitude and propagation speeds reduction throughout the domain. Results using the beta approximation, with an optimal domain-wide constant value of 1.5%, show a somewhat comparable impact in phase but opposite direction of the impact in amplitude, increasing amplitudes everywhere. In relative terms, both implementations lead to a reduction of the tidal representation error in comparison with the reference run without SAL, with the full SAL approach showing further impacted, improved results. Although the overprediction of tidal amplitudes and propagation speeds in the reference run might have additional sources like the lack of additional dissipative processes and non-considered bottom friction settings, results show an overall significant impact, most remarkable in tidal phases. After showing evidence of the SAL impact in regional models, the question of how to include this physical process in them in an efficient way arises, since SAL is a non-local effect and depends on the instantaneous water levels over the whole ocean, which is non-trivial to implement.     

Using Diurnal Temperature Signals to Infer Vertical Groundwater‐Surface Water Exchange

Heat is a powerful tracer to quantify fluid exchange between surface water and groundwater. Temperature time series can be used to estimate pore water fluid flux, and techniques can be employed to extend these estimates to produce detailed plan‐view flux maps. Key advantages of heat tracing include cost‐effective sensors and ease of data collection and interpretation, without the need for expensive and time‐consuming laboratory analyses or induced tracers. While the collection of temperature data in saturated sediments is relatively straightforward, several factors influence the reliability of flux estimates that are based on time series analysis (diurnal signals) of recorded temperatures. Sensor resolution and deployment are particularly important in obtaining robust flux estimates in upwelling conditions. Also, processing temperature time series data involves a sequence of complex steps, including filtering temperature signals, selection of appropriate thermal parameters, and selection of the optimal analytical solution for modeling. This review provides a synthesis of heat tracing using diurnal temperature oscillations, including details on optimal sensor selection and deployment, data processing, model parameterization, and an overview of computing tools available. Recent advances in diurnal temperature methods also provide the opportunity to determine local saturated thermal diffusivity, which can improve the accuracy of fluid flux modeling and sensor spacing, which is related to streambed scour and deposition. These parameters can also be used to determine the reliability of flux estimates from the use of heat as a tracer.