Considering river structure and stability in the light of evolution: feedbacks between riparian vegetation and hydrogeomorphology

River ecological functioning can be conceptualized according to a four‐dimensional framework, based on the responses of aquatic and riparian communities to hydrogeomorphic constraints along the longitudinal, transverse, vertical and temporal dimensions of rivers. Contemporary riparian vegetation responds to river dynamics at ecological timescales, but riparian vegetation, in one form or another, has existed on Earth since at least the Middle Ordovician (c. 450 Ma) and has been a significant controlling factor on river geomorphology since the Late Silurian (c. 420 Ma). On such evolutionary timescales, plant adaptations to the fluvial environment and the subsequent effects of these adaptations on fluvial sediment and landform dynamics resulted in the emergence, from the Silurian to the Carboniferous, of a variety of contrasted fluvial biogeomorphic types where water flow, morphodynamics and vegetation interacted to different degrees. Here we identify several of these types and describe the consequences for biogeomorphic structure and stability (i.e. resistance and resilience), along the four river dimensions, of feedbacks between riparian plants and hydrogeomorphic processes on contrasting ecological and evolutionary timescales. Copyright © 2014 John Wiley & Sons, Ltd.     

Heterogeneous distributions of CO2 may be more important for dissolution and karstification in coastal eogenetic limestone than mixing dissolution

Mixing dissolution, a process whereby mixtures of two waters with different chemical compositions drive undersaturation with respect to carbonate minerals, is commonly considered to form cavernous macroporosity (e.g. flank margin caves and banana holes) in eogenetic karst aquifers. On small islands, macroporosity commonly originates when focused dissolution forms globular chambers lacking entrances to the surface, suggesting that dissolution processes are decoupled from surface hydrology. Mixing dissolution has been thought to be the primary dissolution process because meteoric water would equilibrate rapidly with calcium carbonate as it infiltrates through matrix porosity and because pCO₂ was assumed to be homogeneously distributed within the phreatic zone. Here, we report data from two abandoned well fields in an eogenetic karst aquifer on San Salvador Island, Bahamas, that demonstrate pCO₂ in the phreatic zone is distributed heterogeneously. The pCO₂ varied from less than log ?2.0 to more than log ?1.0 atm over distances of less than 30 m, generating dissolution in the subsurface where water flows from regions of low to high pCO₂ and cementation where water flows from regions of high to low pCO_2. Using simple geochemical models, we show dissolution caused by heterogeneously distributed pCO₂ can dissolve 2.5 to 10 times more calcite than the maximum amount possible by mixing of freshwater and seawater. Dissolution resulting from spatial variability in pCO₂ forms isolated, globular chambers lacking initial entrances to the surface, a morphology that is characteristic of flank margin caves and banana holes, both of which have entrances that form by erosion or collapse after cave formation. Our results indicate that heterogeneous pCO₂, rather than mixing dissolution, may be the dominant mechanism for observed spatial distribution of dissolution, cementation and macroporosity generation in eogenetic karst aquifers and for landscape development in these settings. Copyright © 2015 John Wiley & Sons, Ltd.     

In‐Situ Sonication for Enhanced Recovery of Aquifer Microbial Communities

Sampling methods for characterization of microbial communities in aquifers should target both suspended and attached microorganisms (biofilms). We investigated the effectiveness and reproducibility of low‐frequency (200 Hz) sonication pulses on improving extraction efficiency and quality of microorganisms from a petroleum‐contaminated aquifer in Studen (Switzerland). Sonication pulses at different power levels (0.65, 0.9, and 1.1 kW) were applied to three different groundwater monitoring wells. Groundwater samples extracted after each pulse were compared with background groundwater samples for cell and adenosine tri‐phosphate concentration. Turbidity values were obtained to assess the release of sediment fines and associated microorganisms. The bacterial community in extracted groundwater samples was analyzed by terminal‐restriction‐fragment‐length polymorphism and compared with communities obtained from background groundwater samples and from sediment cores. Sonication enhanced the extraction efficiency up to 13‐fold, with most of the biomass being associated with the sediment fines extracted with groundwater. Consecutive pulses at constant power were decreasingly effective, while pulses with higher power yielded the best results both in terms of extraction efficiency and quality. Our results indicate that low‐frequency sonication may be a viable and cost‐effective tool to improve the extraction of microorganisms from aquifers, taking advantage of existing groundwater monitoring wells.     

Real‐time distributed hybrid testing: coupling geographically distributed scientific equipment across the Internet to extend seismic testing capabilities

Large‐scale testing and qualification of structural systems and their components is crucial for the development of earthquake engineering knowledge and practice. However, laboratory capacity is often limited when attempting larger experiments due to the sheer size of the structures involved. To overcome traditional laboratory capacity limitations, we present a new earthquake engineering testing method: real‐time distributed hybrid testing. Extending current approaches, the technique enables geographically distributed scientific equipment including controllers, dynamic actuators and sensors to be coupled across the Internet in real‐time. As a result, hybrid structural emulations consisting of physical and numerical substructures need no longer be limited to a single laboratory. Larger experiments may distribute substructures across laboratories located in different cities whilst maintaining correct dynamic coupling, required to accurately capture physical rate effects. The various aspects of the distributed testing environment have been considered. In particular, to ensure accurate control across an environment not designed for real‐time testing, new higher level control protocols are introduced acting over an optimised communication system. New large time‐step prediction algorithms are used, capable of overcoming both local actuation and distributed system delays. An overview of the architecture and algorithms developed is presented together with results demonstrating a number of current capabilities. Copyright © 2013 John Wiley & Sons, Ltd.     

Numerical Modeling of Ice Fog in Interior Alaska Using the Weather Research and Forecasting Model

An ice microphysics parameterization scheme has been modified to better describe and understand ice fog formation. The modeling effort is based on observations in the Sub-Arctic Region of Interior Alaska, where ice fog occurs frequently during the cold season due to abundant water vapor sources and strong inversions existing near the surface at extremely low air temperatures. The microphysical characteristics of ice fog are different from those of other ice clouds, implying that the microphysical processes of ice should be changed in order to generate ice fog particles. Ice fog microphysical characteristics were derived with the NCAR Video Ice Particle Sampler during strong ice fog cases in the vicinity of Fairbanks, Alaska, in January and February 2012. To improve the prediction of ice fog in the Weather Research and Forecasting model, observational data were used to change particle size distribution properties and gravitational settling rates, as well as to implement a homogeneous freezing process. The newly implemented homogeneous freezing process compliments the existing heterogeneous freezing scheme and generates a higher number concentration of ice crystals than the original Thompson scheme. The size distribution of ice crystals is changed into a Gamma distribution with the shape factor of 2.0, using the observed size distribution. Furthermore, gravitational settling rates are reduced for the ice crystals since the crystals in ice fog do not precipitate in a similar manner when compared to the ice crystals of cirrus clouds. The slow terminal velocity plays a role in increasing the time scale for the ice crystals to settle to the surface. Sensitivity tests contribute to understanding the effects of water vapor emissions as an anthropogenic source on the formation of ice fog.     

Exploring the influence of biofilm on short‐term expansion and contraction of supratidal rock: an example from the Mediterranean

Previous geomorphological investigations using the traversing micro‐erosion meter (TMEM) have identified daily and hourly contractions and expansions of littoral rock on a range of lithologies. While organic influences on these patterns have been inferred, this has rarely been tested in a controlled way. Here, a TMEM was used to measure micro‐scale (<mm) topographic changes on supratidal limestone of the Massif des Calanques, southern France. Four TMEM monitoring sites (each 64 cm²) were set up in total, two in the Calanque de Morgiou and two in the Presqu'ile de Cassis. On both shores one TMEM bolt site was positioned on bare rock and the other on colonized rock. TMEM data were collected and the surface micro‐topography mapped for each site at two‐hourly intervals from early morning to late evening across one day in mid‐summer. Significant relative expansion and contraction was observed between measurement periods at all four sites, regardless of biofilm colonization (P < 0.001 in all instances), and sometimes between adjacent zones on the rock surface (at a scale of centimetres). Rock with and without biofilm behaved broadly similarly, but the magnitude of topographic change varied: average movement from one interval to the next was 0.03 mm on bare sites and 0.06 mm on biofilm‐colonized sites. As expected, patterns of surface change related largely to insolation, with greatest movement occurring in the morning and evening when thermal gradients were steepest. Interestingly, the presence of a biofilm intensified rock expansion, but delayed surface response to microclimatic variability. We largely attribute this effect to biofilm influences on surface albedo, and hypothesize that episodes of contraction and expansion are superimposed onto longer (annual to decadal) episodes of surface movement and downwearing. Short‐term TMEM studies therefore need to be coupled with longer‐term seasonal and annual measurements to improve understanding of rock surface dynamics. Copyright © 2014 John Wiley & Sons, Ltd.     

The history and dynamics of a welded pyroclastic dam and its failure

Igneous intrusions in coal seams are found in 80 % of coal mines in the Huaibei coalfield, China, and coal and gas outburst accidents have occurred 11 times under a 120-m-thick sill in the Haizi mining field. The magma’s heat had a significant controlling effect on coal seam gas occurrence. Based on theoretical analysis, experimental tests and site validation, we analyzed the temperature distribution following magma intrusion into coal measure strata and the variations in multiple physical parameters and adsorption/desorption characteristics between the underlying coal seams beneath the sill in the Haizi mining field and coal seams uninfluenced by magma intrusion in the adjacent Linhuan mining field. The research results show that the main factors controlling the temperature distribution of the magma and surrounding rocks in the cooling process include the cooling time and the thickness and initial temperature of the magmatic rock. As the distance from sill increases, the critical effective temperature and the duration of sustained high temperatures decrease. The sill in the Haizi mining field significantly promoted coal seam secondary hydrocarbon generation in the thermally affected area, which generated approximately 340 m³/t of hydrocarbon. In the magma-affected area, the metamorphic grade, micropore volume, amount of gas adsorption, initial speed of gas desorption, and amount of desorption all increase. Fluid entrapment by sills usually causes the gas pressure and gas content of the underlying coal seams to increase. As a result, the outburst risks from coal seams increases as well.     

Estimating ventilation time scales using overturning stream functions

A simple method for estimating ventilation time scales from overturning stream functions is proposed. The stream function may be computed using either geometric coordinates or a generalized vertical coordinate, such as potential density (salinity in our study). The method is tested with a three-dimensional circulation model describing an idealized semi-enclosed ocean basin ventilated through a narrow strait over a sill, and the result is compared to age estimates obtained from a passive numerical age tracer. The best result is obtained when using the stream function in salinity coordinates. In this case, the reservoir-averaged advection time obtained from the overturning stream function in salinity coordinates agrees rather well with the mean age of the age tracer, and the corresponding maximum ages agree very well.     

Modelling the effects of Zostera noltei meadows on sediment dynamics: application to the Arcachon lagoon

A three-dimensional model has been modified to describe the complex interactions between hydrodynamics, sediment dynamics and biological parameters in the presence of Zostera noltei. The model treats seagrass leafs as flexible blades that bend under hydrodynamic forcing and alter the local momentum and turbulence fluxes and, therefore, the benthic shear conditions; these changes cause related changes to the mass balance at the boundary of the bed, in turn affecting the suspended matter in the column and ultimately primary productivity and the growth of the dwarf-grass. Modelling parameters related to the impact of Z. noltei to the local flow and to erosion and deposition rates were calibrated using flume experimental measurements; results from the calibration of the model are presented and discussed. The coupled model is applied in the Arcachon Bay, an area with high environmental significance and large abundance of dwarf-grass meadows. In the present paper, results from preliminary applications of the model are presented and discussed; the effectiveness of the coupled model is assessed comparing modelling results with available field measurements of suspended sediment concentrations and seagrass growth parameters. The model generally reproduces sediment dynamics and dwarf-grass seasonal growth in the domain efficiently. Investigations regarding the effects of the vegetation to the near-bed hydrodynamics and to the sediment suspension in the domain show that dwarf-grass meadows play an important part to velocity attenuation and to sediment stabilisation, with flow and suspended sediment concentrations damping, compared to an unvegetated state, to reach 35–50 and 65 %, respectively, at peak seagrass growth.