Reflection of long internal waves of small amplitudes from an underwater slope

The dynamics of long waves in the vicinity of a transition point of a two-layer flow into a single-layer one is studied within the linear theory of shallow water. The analogy between this problem and the classical problem of surface wave runup on the shore is shown. Conditions for breaking internal waves on a slope are discussed.     

Viruses,bacteria, and heterotrophic nanoflagellates in Laptev Sea plankton

The paper considers the concentrations and functional characteristics of viruses, bacteria, and heterotrophic nanoflagellates determined for the first time in the Laptev Sea in August-September, 2014. The abundance of bacteria, viruses, and heterotrophic nanoflagellates varied from 110.1 × 10³ to 828.4 × 10³ cells/mL, from 384.2 × 10³ to 2932.8 × 10³ particles/mL, and from 108 to 651 cells/mL, respectively. The daily bacterioplankton production varied from 4.2 × 10³ to 381.7 × 10³ cells/mL, with an average of 117.6 × 10³ cells/mL. Electron transmission microscopy has for the first time shown that the frequency of visibly infected bacterial cells varied from 0.2 to 2.0% (0.8% on average) of N_B. The average virus-induced mortality of bacteria was 6.3% of bacterioplankton production, with variations ranging from 1.4 to 16.9%. Grazing on bacteria by heterotrophic nanoflagellates contributed more to bacteria mortality than virus-induced bacterial lysis. By grazing on bacteria, heterotrophic nanoflagellates consumed large quantities of viruses located on the surface and inside bacterial cells.     

Remote Sensing Observations of Ocean Surface Chlorophyll and Temperature with the Impact of Cyclones and Depressions over the Bay of Bengal Water

MODIS-Aqua derived eight-day composite chlorophyll concentration data analyzed to study the impact of cyclones and depressions on the Bay of Bengal productivity. A total of 15 cyclonic storms and depressions picked up from the India Meteorological Department datasets. MODIS-Aqua data analyzed during October 2002 to December 2009. There was observation of depressions (D), deep depressions (DD), cyclonic storms (CS), severe cyclonic storms (SCS), and very severe cyclonic storms (VSCS) with categories of intensities (“T” numbers 1.5–6) and wind speeds (25–108 knots). The chlorophyll concentration observed to be high (1.0–5.0 mg/m³) with the impact in the coastal and offshore waters. Quickscat scatterometer data showed high wind speed (about 10 meters/second). Sea surface temperature (SST) observed to be decreased (roughly 2°C) with effect of cyclones. The cyclone numbers, intensity, and chlorophyll concentration has been observed to be increasing from 2002 to 2009, with observation of VSCS “Sidr” during 2007. The study would be interesting to link carbon flux/sequestration, marine food chain, and harnessing fishery resources in a postcyclone period.     

Life after death: shallow‐water Mediterranean invertebrate communities associated with mammal bones

Invertebrate and microbial marine communities associated with mammal bones are interesting and poorly understood habitats, mainly known from studies on deep‐water whale remains. In order to characterize these communities in the shallow‐water Mediterranean, we present here the results of a pioneering experiment using mammal bones. Minke whale, pig and cow bones were experimentally deployed on three different background communities: rocky substrate, soft‐bottom and a Posidonia oceanica meadow. Bones were deployed for a year at about 20 m depth and collected every 3 months, and the invertebrate fauna colonizing the bones was identified to the lowest possible taxonomic level. As expected, mammal bones showed remarkable differences when compared with background communities. Within bones, four different clusters could be identified, primarily on the basis of the polychaete fauna, the most abundant and diverse group in the survey. Clusters A1–A3 corresponded to high to moderately altered successional stages composed by a fauna closer to that of anthropogenically enriched shallow‐water environments. These clusters were characterized by the occurrence of the opportunist polychaetes Ophryotrocha puerilis, Neanthes caudata (Cluster A1), Protodorvillea kefersteini (Cluster A2) and Ophryotrocha alborana (Cluster A3). Cluster B was characterized by the presence of the polychaete Oxydromus pallidus together with typical invertebrate background fauna, which suggests that this community, after a year of deployment, was closer to that found in natural conditions. As opposed to similar shallow‐water studies in other geographic areas, no occurrence of the polychaete Osedax (commonly known as bone‐eating worms) was reported from our experiments. Apart from the study on the invertebrate communities, insights about the population dynamics of three of the most abundant species (O. puerilis, O. alborana, N. caudata) are given as well as remarks on a hypothetical trophic network based on fecal pellet analysis.     

Observer presence may alter the behaviour of reef fishes associated with coral colonies

Although underwater visual census (UVC) is the most frequently used technique for quantifying reef fish assemblages, remote video analysis has been gaining attention as a potential alternative. In the South Atlantic Ocean, Millepora spp. (class Hydrozoa) are the only branching coral species; however, little is known about the ecological role that they play for reef fish communities. We compared these two observation methods (remote video and UVC) to estimate reef fish abundance and species richness associated with colonies of the fire‐coral Millepora alcicornis at Tamandaré Reefs, Northeast Brazil. Additionally, the two different techniques were used to compare species behaviour in association with fire‐corals in order to examine the biases associated with each technique and provide useful information for behavioural ecologists studying fish–coral associations. There were no differences in reef fish abundance or species richness sampled by remote video or UVC. However, a significant difference in the behaviour of associated fish was recorded between the two methods. In the presence of a diver carrying out a UVC, fish were observed spending more time sheltered amongst the coral branches compared with passively swimming on coral colonies with the remote video technique. Specifically, on the remote video recordings agonistic interactions between fish and passive swimming accounted for 33.3% and 22.2% of the census time, respectively. By comparison, when observed by a diver fish spent 34.8% of their time sheltering amongst the coral branches. We demonstrate that both techniques are similarly effective for recording fish abundance and species richness associated with fire‐corals. However, differences were observed in the ability of each method to detect the behaviour of coral‐associated fishes. Our findings show that behavioural ecologists studying complex fish–coral associations need to ensure that their aims are clearly defined and that they choose the most appropriate technique for their study in order to minimize methodological biases.     

The influence of physical and biological processes on the ichthyoplankton communities in the Gulf of Sirte (Southern Mediterranean Sea)

This paper reports on the first study on the ichthyoplankton community structure in the Gulf of Sirte and its spatial distribution in relation to environmental conditions and zooplankton abundance. The results make an important contribution to the future management of fisheries in this unexplored, but much exploited, area. Biological samples were collected in July 2008 using a Bongo40 net. In total, 1914 larvae were found and 1652 of these were identified. In particular, bathypelagic taxa were the most abundant, followed by demersal, mesopelagic, pelagic and epipelagic taxa. The ichthyoplankton community had a patchwork distribution influenced by oligotrophic conditions, the bottom depth and oceanographical features. The results suggest that environmental forcings were able to transport the ichthyoplankton to productive areas. Indeed, maximum fish egg densities were found in coastal stations in correspondence with the Atlantic Tunisian Current inflow, whereas larvae were mainly concentrated in the east side of the Gulf, probably as a result of advection by the anticyclonic circulation. Additionally, the distribution patterns of the total larvae density and the different assemblages were well matched with the abundance of the zooplankton, probably determining final larval survival, growth and recruitment.     

Limited differences among habitats in deep‐sea macro‐infaunal communities off New Zealand: implications for their vulnerability to anthropogenic disturbance

The spread of human activities into the deep sea may pose a high risk to benthic communities and affect ecosystem integrity. The deep sea is characterized by physical and biological heterogeneity and different habitat types are likely to differ in their vulnerability to anthropogenic impacts. However, across‐habitat comparisons are rare, and no comprehensive ecological risk assessment has yet been developed. To address this gap in our knowledge, we compared macro‐infaunal community structure in four habitats (slope, canyons, seamounts and methane seeps) at depths between 700 and 1500 m in the Hikurangi Margin and Bay of Plenty regions off New Zealand. The most striking contrast in community structure was between the two study regions, due to an order of magnitude difference in macro‐infaunal abundance that we believe was caused by differences in surface productivity and food availability at the sea bed. We found differences in structural and functional attributes of macro‐infaunal communities among some habitats in the Hikurangi Margin (slope, canyon and seep), but not in the Bay of Plenty. We posit that differences between canyon and slope communities on the Hikurangi Margin are due to enhanced food availability inside canyons compared with adjacent slope habitats. Seep communities were characterized by elevated abundance of both symbiont‐bearing and heterotrophic taxa, and were the most distinct, and variable, among the habitats that we considered on the Hikurangi Margin. Communities of seamounts were not distinct from slope or canyon communities on the Hikurangi Margin, probably reflecting similar environmental conditions in these habitats. The communities of deep‐sea canyon and seep habitats on the Hikurangi Margin were sufficiently dissimilar from each other and from slope habitats to warrant separate management consideration. By contrast, the low dissimilarity between communities of canyon and slope habitats in the Bay of Plenty suggests that habitat‐based management is not required in this region, for macro‐infauna at least. Although the two study regions share similar species pools, populations of the Hikurangi Margin region may be less vulnerable than the sparser populations of the Bay of Plenty due to the higher availability of potential colonizers and faster population growth. Thus regions, and habitats in some regions, should be subject to separate ecological risk assessment to help identify the key risks and consequences of human activities, and to inform options for reducing or mitigating impacts.     

Distribution of calcareous nannoplankton in surface sediments along the northern KwaZulu-Natal Bight,South Africa

The coccolith assemblages from seafloor sediments over the inner shelf in the northern region of the KwaZulu- Natal Bight on the east coast of South Africa were identified and their distribution determined. In all, 29 Recent species and taxonomic groups, as well as 29 reworked species were recorded. The distribution of the Recent species appears to be governed by environmental features that have been documented in other studies: temperature, salinity, nutrient concentration and water circulation pattern, which reveals the long-term existence of a circulation cell in the sector between Durban Bay and the Thukela River. The outer edge of the cell consists of nutrient-enriched mixed layers and is characterised by an enhanced abundance of Gephyrocapsa oceanica, whereas the central region consists of a stratified nutrient-depleted water mass with elevated abundance of Umbilicosphaera sibogae, Florisphaera profunda, and a group of umbelliform species. The elevated levels of G. oceanica, coupled with the rarity of U. sibogae, F. profunda and the umbelliform species, confirm the presence of a permanent upwelling cell off Richards Bay. The maximum abundance of F. profunda found between Richards Bay and Lake Nhlabane indicates a region of nutrient-depleted (except for nitrite) conditions.     

The 2013 Ibiza Calibration Campaign of Jason-2 and SARAL Altimeters

This study presents the results of the 2013 Ibiza (Western Mediterranean) calibration campaign of Jason-2 and SARAL altimeters. It took place from 14 to 16 September 2013 and comprised two phases: the calibration of the GNSS (Global Navigation Satellite System) buoys to estimate the antenna height of each of them and the absolute calibration to estimate the altimeter bias (i.e., the difference of sea level measured by radar altimetry and GNSS). The first one was achieved in the Ibiza harbor at a close vicinity of the Ibiza tide gauge and the second one was performed at ～ 40 km at the northwest of Ibiza Island at a crossover point of Jason-2 and SARAL nominal groundtracks. Five buoys were used to delineate the crossover region and their measurements interpolated at the exact location of each overflight. The overflights occurred two consecutive days: 15 and 16 September 2013 for Jason-2 and SARAL, respectively. The GNSS data were processed using precise point positioning technique. The biases found are of (?0.1 ± 0.9) and (?3.1 ± 1.5) cm for Jason-2 and SARAL, respectively.