Stable carbon isotopic compositions of intact polar lipids reveal complex carbon flow patterns among hydrocarbon degrading microbial communities at the Chapopote asphalt volcano

Seepage of asphalt forms the basis of a cold seep system at 3000 m water depth at the Chapopote Knoll in the southern Gulf of Mexico. Anaerobic microbial communities are stimulated in the oil-impregnated sediments as evidenced by the presence of intact polar membrane lipids (IPLs) derived from archaea and Bacteria at depths up to 7 m below the seafloor. Detailed investigation of stable carbon isotope composition (δ¹³C) of alkyl and acyl moieties derived from a range of IPL precursors with distinct polar head groups resolved the complexity of carbon metabolisms and utilization of diverse carbon sources by uncultured microbial communities. In surface sediments most of the polar lipid-derived fatty acids with phosphatidylethanolamine (PE), phosphatidylglycerol (PG) and diphosphatidylglycerol (DPG) head groups could be tentatively assigned to autotrophic sulfate-reducing bacteria, with a relatively small proportion involved in the anaerobic oxidation of methane. Derivatives of phosphatidyl-(N)-methylethanolamine (PME) were abundant and could be predominantly assigned to heterotrophic oil-degrading bacteria. Archaeal IPLs with phosphate-based hydroxyarchaeols and diglycosidic glyceroldibiphytanylglyceroltetraethers (GDGTs) were assigned to methanotrophic archaea of the ANME-2 and ANME-1 cluster, respectively, whereas δ¹³C values of phosphate-based archaeols and mixed phosphate-based and diglycosidic GDGTs point to methanogenic archaea. At a 7 m deep sulfate-methane transition zone that is linked to the upward movement of gas-laden petroleum, a distinct increase in abundance of archaeal IPLs such as phosphate-based hydroxyarchaeols and diglycosidic archaeol and GDGTs is observed; their δ¹³C values are consistent with their origin from both methanotrophic and methanogenic archaea. This study reveals previously hidden, highly complex patterns in the carbon-flow of versatile microbial communities involved in the degradation of heavy oil including hydrocarbon gases that would not have been evident from classical compound-specific isotope analyses of either bulk IPL or apolar lipid derivatives.     

Indirect Effects of Salinity and Temperature on Kuwait’s Shrimp Stocks

Discharge of the Shatt Al-Arab is believed to be a dominating component of the northern Arabian Gulf’s ecology and largely responsible for productivity of Kuwait’s fisheries. With major construction of dams on the Tigris and Euphrates Rivers in Turkey, river discharge has been substantially reduced, and flooding essentially eliminated. We attempted to relate river flow and shrimp landings indirectly by correlating 19 years of salinity and temperature data from Kuwait’s waters with corresponding annual shrimp landings. For green tiger prawns (Penaeus semisulcatus), the combination of October salinities and January temperatures provided the best correlation (r = 0.67) with landings in the following shrimping season. For the combined landings of jinga and kiddi shrimps (Metapenaeus affinis and Parapenaeopsis stylifera, respectively), December salinity during season and May temperature prior to season resulted in the best correlation (r = 0.87). Landings of these two species also correlated well with spring and summer temperatures. Under normal conditions, late winter or early spring temperatures prior to fishing season influence recruitment of the green tiger prawn, whereas December salinities during harvest season influence the abundance of jinga–kiddi shrimps. With further reductions in the Shatt Al-Arab discharge and the elimination of flood events, Kuwait’s shrimp landings will most likely decrease over time.     

Paleoenvironmental reconstruction of the Early to Middle Miocene Central Paratethys using stable isotopes from bryozoan skeletons

Stable carbon and oxygen isotope values from single bryozoan colonies were used to reconstruct the paleoenvironments of the Early to Middle Miocene (Ottnangian to Badenian) sediments of the Central Paratethys. This approach utilizes a locally abundant allochem while avoiding matrix and multiple allochem contamination from bulk rock samples. Bryozoan colonies (and a few foraminifera and rock matrix samples) from 14 localities yielded 399 carbon and oxygen isotope values. Data from six of the localities (15 % of the total number of samples) were interpreted as having been diagenetically altered and were rejected. The remaining data indicate a primarily localized upwelling signal with lesser variation caused by global climatic and regional tectonic forcing of sea level, salinity, and temperature. Paleotemperatures were calculated to range from 12 to 21 °C. Despite potential taxonomic and diagenetic problems, bryozoan colonies are a powerful, underutilized source of paleoenvironmental carbon and oxygen isotope data.     

Stress sensitivity of stylolite morphology

Stylolites are rough surfaces that form by localized stress-induced dissolution. Using a set of limestone rock samples collected at different depths from a vertical section in Cirque de Navacelles (France), we study the influence of the lithostatic stress on the stylolites morphology on the basis of a recent morphogenesis model. We measured the roughness of a series of bedding-parallel stylolites and show that their morphology exhibits a scaling invariance with two self-affine scaling regimes separated by a crossover-length (L) at the millimeter scale consistent with previous studies. The importance of the present contribution is to estimate the stylolite formation stress σ from the sample position in the stratigraphic series and compare it to the crossover-length L using the expected relationship: L ～ σ ^?2. We obtained a successful prediction of the crossover behavior and reasonable absolute stress magnitude estimates using relevant parameters: depth of stylolite formation between 300 to 600 m with corresponding normal stress in the range of 10–18 MPa. Accordingly, the stylolite morphology contains a signature of the stress field during formation and we thus suggest that stylolites could be used as paleo-stress gauges of deformation processes in the upper crust.     

Spreading of Antarctic Bottom Water and its effects on the floor of the Indian Ocean inferred from bottom-water potential temperature,turbidity, and sea-floor photography

Data on bottom-water potential temperature, turbidity and current indications show that in the Southern Ocean west of the Kerguelen Plateau, Antarctic Bottom Water (AABW) of Weddell Sea origin spreads northwards from the Atlantic—Indian Basin in two directions: (1) AABW enters the Agulhas Basin through relatively deep areas in the Mid-Indian Ridge at 20–25°E and possibly at 35°E, and flows northwards into the Mozambique Basin as far as its northern limits; (2) a more easterly spreading path extends from the Atlantic—Indian Basin through the Crozet into the Madagascar, Mascarene, Somali and Arabian Basins. The passage in the western branch of the Indian Ridge for the AABW spreading from the Crozet into the Madagascar Basin appears to be at 29-26°S and 60–64°E.East of the Kerguelen Plateau in the South Indian Basin, the bottom water formed mainly along the Adélie Coast and Ross Sea travels west towards the Kerguelen Plateau and then parallel to it. This water finally flows eastwards hugging the Southeast Indian Ridge. Significant deviations from this general circulation pattern occur due to local topographic effects. Some AABW in the South Indian Basin exits through a passage at 120–125°E in the region of the Australian—Antarctic discordance in the Southeast Indian Ridge and enters the South Australian Basin and subsequently the Wharton Basin. This passage is clearly indicated by the northward extension of a cold, bottom-water tongue as shown by the temperature distribution in the region; the bottom-water effects in the passage are reflected in the high turbidity and current lineations on the sea floor.In the Southern Ocean basins, bottom-water turbidity is generally high, reflecting in part the strong bottom-water activity. The effects of AABW circulation on the sea floor—in the form of well-developed small- or large-scale current ripples and erosional/depositional features, manganese-nodule formations, and unconformities and reworking of sediments observed in cores — are also marked in these basins. Even though the AABW in the Wharton Basin is cold, its spreading effects on the sea floor are minimal in this basin in contrast to the basins west of the Mid-Indian Ridge at comparable latitudes.     

Leaching and differential recrystallization of metamict zircon under experimental hydrothermal conditions

We report results of hydrothermal experiments on four alluvial zircons from Sri Lanka, which cover a wide range of radiation damage, at 450 °C and 1.3 kbar for 744 h with 2 M CaCl₂ solution as reactive fluid. After the hydrothermal treatment, the most metamict samples show micrometer-thick reaction rims, which surround apparently unreacted zircon, as revealed by cathodoluminescence (CL) and Nomarski differential interference contrast (NDIC) images. These rims have sharp, curved, and transgressive boundaries with unreacted zircon and are, in some cases, spread out along cracks. The thickness of reaction rims increases with increasing cumulated !-dosage of the starting materials. The reaction rims are strongly enriched in Ca (up to 7000 ppm) and a water species and depleted in radiogenic Pb, Zr, and Si, as revealed by electron microprobe analyses. A significant Th loss from the reaction rims was detected in the case of the most metamict sample, whereas U remained in the structure. FT-infrared spectrometry and X-ray diffraction measurements revealed that the bulk run products were recrystallized. Using micro-Raman spectrometry, we were able to demonstrate that differential recrystallization took place. The reaction rims are strongly recrystallized, whereas the unreacted grain interiors underwent only minor recrystallization. Recrystallization of the rims is accompanied by an enhancement of the integral CL intensity. It is suggested that recrystallization in the reaction rims was catalyzed by water infiltration and ion exchange and prevented significant congruent zircon dissolution under the given experimental conditions. Previous zircon studies have shown that (1) a transgressive morphology, (2) a reduced Th-U ratio, and (3) an enhanced CL emission are also characteristics of rims in zircons from high-grade metamorphic rocks. Based on these similarities between natural and experimentally produced rims, it is suggested that leaching-catalyzed recrystallization is an important alteration process in zircon under wet geological conditions and can account for many complex core-rim structures found in natural zircons. Furthermore, the strong enrichment of Ca in the reaction rims supports previous assumptions that high Ca concentrations in natural zircons are of secondary origin. It is suggested that lower U-Pb concordia intercept ages obtained from single-phase zircons with high Ca contents date a leaching event.     

High spatial resolution hyperspectral mapping of in-stream habitats, depths, and woody debris in mountain streams

This article evaluates the potential of 1-m resolution, 128-band hyperspectral imagery for mapping in-stream habitats, depths, and woody debris in third- to fifth-order streams in the northern Yellowstone region. Maximum likelihood supervised classification using principal component images provided overall classification accuracies for in-stream habitats (glides, riffles, pools, and eddy drop zones) ranging from 69% for third-order streams to 86% for fifth-order streams. This scale dependency of classification accuracy was probably driven by the greater proportion of transitional boundary areas in the smaller streams. Multiple regressions of measured depths (y) versus principal component scores (x₁, x₂,…, x_n) generated R² values ranging from 67% for high-gradient riffles to 99% for glides in a fifth-order reach. R² values were lower in third-order reaches, ranging from 28% for runs and glides to 94% for pools. The less accurate depth estimates obtained for smaller streams probably resulted from the relative increase in the number of mixed pixels, where a wide range of depths and surface turbulence occurred within a single pixel. Matched filter (MF) mapping of woody debris generated overall accuracies of 83% in the fifth-order Lamar River. Accuracy figures for the in-stream habitat and wood mapping may have been misleadingly low because the fine-resolution imagery captured fine-scale variations not mapped by field teams, which in turn generated false “misclassifications” when the image and field maps were compared.The use of high spatial resolution hyperspectral (HSRH) imagery for stream mapping is limited by the need for clear water to measure depth, by any tree cover obscuring the stream, and by the limited availability of airborne hyperspectral sensors. Nonetheless, the high accuracies achieved in northern Yellowstone streams indicate that HSRH imagery can be a powerful tool for watershed-wide mapping, monitoring, and modeling of streams.     

Turbulent fluxes from Helipod flights above quasi-homogeneous patches within the LITFASS area

Turbulent fluxes of sensible and latent heat were measured with the helicopter-borne turbulence probe Helipod over a heterogeneous landscape around the Meteorological Observatory Lindenberg during the STINHO-2 and LITFASS-2003 field experiments. Besides the determination of area-averaged heat fluxes, the analysis focused on different aspects of the response of the turbulent structure of the convective boundary layer (CBL) on the surface heterogeneity. A special flight pattern was designed to study flux profiles both over quasi-homogeneous sub-areas of the study region (representing the major land use types—forest, farmland, water) and over a typical mixture of the different surfaces. Significant differences were found between the heat fluxes over the individual surfaces along flight legs at about 80 m above ground level, in agreement with large-aperture scintillometer measurements. This flux separation was still present during some flights at levels near the middle of the CBL. Different scales for the blending height and horizontal heterogeneity were calculated, but none of them could be identified as a reliable indicator of the mixing state of the lower CBL. With the exception of the flights over water, the latent heat flux measurements generally showed a larger statistical error when compared with the sensible heat flux. Correlation coefficients a nd integral length scales were used to characterise the interplay between the vertical transport of sensible and latent heat, which was found to vary between ‘fairly correlated’ and ‘decoupled’, also depending on the soil moisture conditions.