Lethal concentrations of suspended solids for common native fish species that are rare in New Zealand rivers with high suspended solids loads

Abstract

Common native fish species that are rare in New Zealand rivers with high suspended solids (SS) concentrations were identified to determine which species were likely to be most affected by high SS concentrations. Mortality rates for the three most sensitive species (banded kokopu Galaxias fasciatus, redfin bully Gobiomorphus huttoni, common smelt Retropinna retropinnd) were measured over a range of SS concentrations to identify lethal concentrations. The survival of banded kokopu and redfin bully was not reduced by SS concentrations up to 43 000 g m^?3; however, the 24‐h survival of common smelt was reduced by SS concentrations over 1000 g m^?3, and its median lethal concentration (LC50) was close to 3000 g m^?3. SS concentrations over 3000 g m^?3 for more than 24 h will therefore reduce smelt but not affect the mortality of most other common native fish species. Although mortality from high concentrations of SS can account for the scarcity of smelt in rivers with high SS concentrations, mortality from high SS does not explain the scarcity of banded kokopu or redfin bully in such rivers. High turbidity (>20 nephelometric turbidity units) is known to limit the upstream migration and recruitment of juvenile banded kokopu in rivers with increased SS concentrations. Banded kokopu is therefore affected by increased turbidity from SS rather than lethal SS concentrations. As redfin bully were not affected by either high turbidity levels or high SS concentrations, the low abundance of this species in rivers with high SS concentrations is likely to be related to the siltation of benthic habitats.     

Risks of shifting baselines highlighted by anecdotal accounts of New Zealand's snapper (Pagrus auratus) fishery

Anecdotal data sources may constitute an important component of the information available about an exploited species, as record keeping may not have occurred until after exploitation began. Here, we aimed to fill any gaps in the exploitative history of the sparid snapper (Pagrus auratus), using social and historical research methods. Social research consisted of interviews with recreational fishers, focusing on the most and largest snapper they had caught. In addition, the diary‐logs of two recreational fishers were analysed. Historical research consisted of investigation of old books, photos, archives and unpublished sources unconventional to fishery science. Interviews with fishers demonstrated no or weak trends in snapper abundance or size, and were likely impeded by a lack of ability to detect change in a fish stock that may still be considered abundant. The fishers’ perception of change, however, largely reflected recent experiences (last c. 10 years), when biomass is understood to have increased, and mostly did not consider experiences before the 1980s. Alternatively, diary‐logs of fisher catch rates produced a pattern that matched formal stock assessments of snapper biomass, suggesting declines in abundance up until the 1990s and an increase in biomass after that time. Historical research, although more qualitative, had the ability to investigate periods where formal records were not kept and described a fishery vastly different from the current one. Snapper were easily caught, in great abundance and in unusual locations. Localised depletion of snapper was first noticed in the early 20th century, despite spectacular catches of snapper occurring after that time. Snapper behaviour was also likely different, with visual sightings of snapper by onlookers a common occurrence. Although predictions from stock assessment models are consistent with that of the anecdotes listed here (i.e., high biomass in the past), these anecdotes are valuable as they explain lost biomass in a perspective meaningful to all. This perspective may be valuable for managers trying to consider the non‐financial value of a shared fishery but, if unrecognised, represents a shifting baseline.     

Terminology and units in optical oceanography

Abstract

This document presents fundamental terms describing the transfer of radiative energy and relevant optical properties of natural waters. These are primarily based upon the terminology of the “Système International d'Unités (SI)”; and the “International Commission on Illumination (CIE).’’ Quantities and Symbols as proposed in the present terminology follow and extend the terminology that was recommended by the Committee on Radiant Energy in the Sea (of the International Association of Physical Oceanography, IAPO), as published by Jerlov (1968, Optical Oceanography Elsevier Oceanography Series, Vol. 5; 1976, Marine Optics Elsevier Oceanography Series, Vol. 14).     

Biochemical‐genetic and meristic evidence that blue and copper moki (Teleostei: Latridae: Latridopsis) are discrete species

Specimens of blue moki Latridopsis ciliaris (Forster in Bloch & Schneider, 1801) from New Zealand were shown to differ from specimens of copper moki Latridopsis forsteri (Castelnau, 1872) using two genetic methods—allozymes and muscle proteins. Allozyme techniques revealed fixed differences between blue and copper moki at 4 out of 15 loci. There was a genetic distance of 0.31–0.34 between population samples of the two colour morphs. The two morphs were also distinguished by iso‐electric focusing of muscle proteins. Meristic characters, counted in the specimens studied with genetic markers, revealed diagnostic markers in tubed lateral line scales and scales in the lower transverse series. It is concluded that specimens of blue moki from New Zealand and copper moki from New Zealand and Tasmania are valid species.     

Summer light‐trap catches of adult Trichoptera in hill‐country catchments of contrasting land use,Waikato, New Zealand

The distribution of adult Trichoptera in light traps was investigated alongside nine streams draining catchments under native forest, pine forest, or pasture near Hamilton, Waikato, New Zealand. The aim of the study was to determine the relationship between abundance, taxonomic richness, and community composition with respect to land use during summer, and to evaluate the use of adult Trichoptera compared with benthic invertebrates as potential bio‐indicators of the effectiveness of land‐management changes. Adult Trichoptera faunas alongside the native streams were dominated by Hydrobiosidae, Conoesucidae, and Helicopsychidae (each >10% of total Trichoptera numbers for at least two of the three sites), whereas Leptoceridae, Oeconescidae, and Hydrobiosidae were relatively abundant alongside at least two of the pine sites. Adult Trichoptera faunas at the pasture sites were strongly dominated by Hydroptilidae which made up 47–85% of numbers caught at all sites. The mean number of individuals and taxa caught in light traps increased from November to January and then declined in February for all land‐use types. Overall, total numbers and taxonomic richness of adult Trichoptera were significantly lower at the pine sites compared to the pasture or native sites. TWINSPAN classification of benthic invertebrates collected in November clearly differentiated sites based on land use for presence/absence and percentage abundance data. A similar pattern was evident for most sites when adult Trichoptera faunas were used for the four sampling dates combined, suggesting that light trapping has potential as a tool for bio‐monitoring.     

Interannual variability in vertical export in the Ross Sea: Magnitude, composition, and environmental correlates

The vertical flux of particulate matter from the surface of the Ross Sea, Antarctica, has been suggested as being large, with substantial seasonal and spatial variations. We conducted a study in which vertical flux was quantified using sediment traps deployed at 200 m and compared to estimates calculated from one-dimensional budgets of nutrients (nitrogen and silicon). Estimates of flux were collected at two locations in the southern Ross Sea from late December to early February during four years: 2001-2002, 2003-2004, 2004-2005, and 2005-2006. Phytoplankton biomass and vertical flux varied substantially seasonally and spatially between the two sites, and among years. The greatest flux was observed in 2001-2002, with a short-term maximum organic carbon flux of 3.13 mmol m⁻² d⁻¹, and the summer mean organic carbon flux equal to 0.93 mmol m⁻² d⁻¹. In contrast, the mean carbon flux at the same site in 2003-2004 was over an order of magnitude less, averaging 0.19 mmol m⁻² d⁻¹, despite the fact that productivity in that year was substantially greater. In 2005-206 the contribution of fecal pellets to flux was smallest among all years, and the pellet contribution ranged from <1 to more than 50% of organic flux. As the moorings also had surface layer fluorometers, the relationship between surface biomass and sediment trap flux was compared. Temporal lags between surface fluorescence and flux at 200 m maxima in 2003-2004 and 2004-2005 ranged from two to six days; however, in 2005-2006 the temporal offset between biomass and flux was much longer, ranging from 11 to 27 days, suggesting that fecal pellet production appeared to increase the coupling between flux and surface production. Estimates of export from the upper 200 m based on one-dimensional nutrient budgets were greater than those recorded by the sediment traps. Nutrient budgets also indicated that siliceous production averaged ca. 40% of the total annual production. The variations observed in the flux of biogenic matter to depth in the Ross Sea are large, appear to reflect different forcing among years, and at present are not adequately understood. However, such variability needs to be both understood and represented in biogeochemical models to accurately assess and predict the effects of climate change on biogeochemical cycles.     

Airborne imagery of a disintegrating Sargassum drift line

Airborne hyperspectral and thermal infrared imagery collected over the Florida Current provide a view of the disintegration of a Sargassum drift line in 5 m s⁻¹ winds. The drift line consists mostly of rafts 20-80 m² in size, though aggregations larger than 1000 m² also occur. Rafts tend to be elongated, curved in the upwind direction, and 0.1-0.5 °C warmer than the surrounding ocean surface. Long weed ‘trails’ extending upwind from the rafts are evidence of plants dropping out and being left behind more rapidly drifting rafts. The raft line may be a remnant of an earlier Sargassum frontal band, which is detectible as an upwind thermal front and areas of submerged weed. Issues are identified that require future field measurements.     

Photoadaptation of carboxylating enzymes and photosynthesis during a spring bloom

Properties of the light saturation curve of photosynthesis and ribulose-1,5-bisphosphate carboxylase (RuBPC) activity are shown to change qualitatively in a natural population of marine phytoplankton during a spring bloom. Evidence is presented to show that these changes constitute photoadapative responses to increasing irradiance. As irradiance increased during the bloom, both the level of light-saturated photosynthesis (P_m) and the initial slope of the light saturation curve (α = photosynthetic efficiency) increased whether those parameters were normalized to chlorophyll a concentration (P_m^b, α^b) or to cell numbers (P_m^c, α^c). The magnitudes of these changes were such that I_k (= P_m/α, the photoadaptation parameter) did not change, but I_m, the light intensity at which photosynthesis becomes saturated, increased. RuBPC activity, both chlorophyll a (RuBPC^b) and cell number normalized (RuBPC^c), also increased during the bloom. We suggest that these adaptations were achieved by simultaneously increasing the number of photosynthetic units, proportionately decreasing the photosynthetic unit size, and increasing both the concentrations of the enzymes of the dark reactions and possibly also of photosynthetic electron transport components.We also observed diminished levels of photoinhibition in the high light adapted cells late in the bloom and have suggested that this was a consequence of the same suite of physiological changes.In situ carbon fixation per cell increased during the bloom whereas no change occurred in this parameter when normalized to chlorophyll a concentration. Although these photoadaptive responses thus permitted carbon to be fixed in situ more rapidly per cell, at a constant efficiency with respect to investment of energy in the photosynthetic apparatus, they did not result in a change in growth rate. Based on consideratios of the role of time scale in physiological adaptation, however, it is suggested that the observed alterations in photosynthesis with increasing irradiance might permit a cell to more rapidly fill an energy quota for division, possibly an advantage in a mixing environment in which energy is patchily distributed, both spatially and temporalyy.Phosphoenolpyruvate carboxylase activity when normalized to chlorophyll a (PEPC^b) did not change during the bloom while chlorophyll a normalized dark carbon fixation decreased sharply and was quantitatively small compared to PEPC^b. On this basis and considering that RuBPC^b increased during the bloom, it is suggested that, although PEPC may be involved in dark carbon fixation, its most important quantitative role is probably an indirect one in light dependent photosynthesis.We have also considered the relevance of laboratory results on photoadaptation to interpretations of field studies and have suggested that batch culture studies must be treated with caution but that turbidistat and semi-continuous methods provide reasonable simulations of natural conditions.     

Cycling the representer algorithm for variational data assimilation with a nonlinear reduced gravity ocean model

The representer method was used by [Ngodock, H.E., Jacobs, G.A., Chen, M., 2006. The representer method, the ensemble Kalman filter and the ensemble Kalman smoother: a comparison study using a nonlinear reduced gravity ocean model. Ocean Modelling 12, 378–400] in a comparison study with the ensemble Kalman filter and smoother involving a 1.5 nonlinear reduced gravity idealized ocean model simulating the Loop Current (LC) and the Loop Current eddies (LCE) in the Gulf of Mexico. It was reported that the representer method was more accurate than its ensemble counterparts, yet it had difficulties fitting the data in the last month of the 4-month assimilation window when the data density was significantly decreased. The authors attributed this failure to increased advective nonlinearities in the presence of an eddy shedding causing the tangent linear model (TLM) to become inaccurate. In a separate study [Ngodock, H.E., Smith, S.R., Jacobs, G.A., 2007. Cycling the representer algorithm for variational data assimilation with the Lorenz attractor. Monthly Weather Review 135 (2), 373–386] applied the cycling representer algorithm to the Lorenz attractor and demonstrated that the cycling solution was able to accurately fit the data within each cycle and beyond the range of accuracy of the TLM, once adjustments were made in the early cycles, thus overcoming the difficulties of the non-cycling solution. The cycling algorithm is used here in assimilation experiments with the nonlinear reduced gravity model. It is shown that the cycling solution overcomes the difficulties encountered by the non-cycling solution due to a limited time range of accuracy of the TLM. Thus, for variational assimilation applications where the TLM accuracy is limited in time, the cycling representer becomes a very powerful and attractive alternative, given that its computational cost is significantly lower than that of the non-cycling algorithm.