A topical evaluation and discussion of data movement technologies for data-intensive scientific applications

Transferring large volumes of information from one location to potentially many others that are geographically distributed and across varying networks is still prevalent in modern scientific data systems. This is despite the movement to push computation to the data and to reduce data movement needed to compute answers to challenging scientific problems, to disseminate information to the scientific community, and to acquire data for curation and enrichment. Because of this, it is imperative that decisions made regarding data movement systems and architectures be backed by both analytical rigor, and also by empirical evidence and measurement. The purpose of this study is to expand on the work performed by our research team over the last decade and to take a fresh look at the evaluation of multiple topical data transfer technologies in use cases derived from data-intensive scientific systems and applications in the areas of Earth science. We report on the evaluation of a set of data movement technologies against a set of empirically derived comparison dimensions. Based on this evaluation, we make recommendations towards the selection of appropriate data movement technologies in scientific applications and scenarios.     

Regional deformation of late Quaternary fluvial sediments in the Apennines foreland basin (Emilia,Italy)

International Journal of Earth Sciences - Our research is aimed at estimating the vertical deformation affecting late Quaternary units accumulated into the foreland basin of the Northern Apennines...     

Normal fault growth influenced by basement fabrics: The importance of preferential nucleation from pre‐existing structures

Reactivation of pre‐existing intra‐basement structures can influence the evolution of rift basins, yet the detailed kinematic relationship between these structures and overlying rift‐related faults remains poorly understood. Understanding the kinematic as well as geometric relationship between intra‐basement structures and rift‐related fault networks is important, with the extension direction in many rifted provinces typically thought to lie normal to fault strike. We here investigate this problem using a borehole‐constrained, 3D seismic reflection dataset from the Taranaki Basin, offshore New Zealand. Excellent imaging of intra‐basement structures and a relatively weakly deformed, stratigraphically simple sedimentary cover allow us to: (a) identify a range of interaction styles between intra‐basement structures and overlying, Plio‐Pleistocene rift‐related normal faults; and (b) examine the cover fault kinematics associated with each interaction style. Some of the normal faults parallel and are physically connected to intra‐basement reflections, which are interpreted as mylonitic reverse faults formed during Mesozoic subduction and basement terrane accretion. These geometric relationships indicate pre‐existing intra‐basement structures locally controlled the position and attitude of Plio‐Pleistocene rift‐related normal faults. However, through detailed 3D kinematic analysis of selected normal faults, we show that: (a) normal faults only nucleated above intra‐basement structures that experienced late Miocene compressional reactivation, (b) despite playing an important role during subsequent rifting, intra‐basement structures have not been significantly extensionally reactivated, and (c) preferential nucleation and propagation of normal faults within late Miocene reverse faults and folds appears to be the key genetic relationship between contractionally reactivated intra‐basement structures and rift‐related normal faults. Our analysis shows that km‐scale, intra‐basement structures can control the nucleation and development of newly formed, rift‐related normal faults, most likely due to a local perturbation of the regional stress field. Because of this, simply inverting fault strike for causal extension direction may be incorrect, especially in provinces where pre‐existing, intra‐basement structures occur. We also show that a detailed kinematic analysis is key to deciphering the temporal as well as simply the spatial or geometric relationship between structures developed at multiple structural levels.     

Towards new applications of underwater photogrammetry for investigating coral reef morphology and habitat complexity in the Myeik Archipelago,Myanmar

Photogrammetry represents a non-destructive, cost-effective tool for coral reef monitoring, able to integrate traditional remote sensing techniques and support researchers’ work. However, its application to submerged habitats is still in early stage. We present new ways to employ Structure from Motion techniques to infer properties of reef habitats. In particular, we propose the use of Digital Surface Models and Digital Terrain Models for assessing coral colonies extension and height and discriminating between seabed and coral cover. Such information can be coupled with digital rugosity estimates to improve habitat characterization. DTM, DSM and orthophotos were derived and used to compute a series of metrics like coral morphologies, reef topography, coral cover and structural complexity. We show the potentialities offered by underwater photogrammetry and derived products to provide useful basic information for marine habitat mapping, opening the possibility to extend these methods for large-scale assessment and monitoring of coral reefs.     

Photobleaching of chromophoric dissolved organic matter in natural waters: kinetics and modeling

The effects of monochromatic and polychromatic UV and visible (VIS) radiation on the optical properties (absorption and fluorescence) of chromophoric dissolved organic matter (CDOM) were examined for a Suwannee River fulvic acid (SRFA) standard and for water from the Delaware and Chesapeake Bays. The primary (direct) loss of absorption and fluorescence occurred at the irradiation wavelength(s), with smaller secondary (indirect) losses occurring outside the irradiation wavelength(s). The efficiency of both direct and indirect photobleaching decreased monotonically with increasing wavelength. Exposure to polychromatic light increased the CDOM absorption spectral slope (S), consistent with previous field measurements. An analysis of the monochromatic photobleaching kinetics argues that a model based on a simple superposition of multiple chromophores undergoing independent photobleaching cannot apply; this conclusion further implies that the absorption spectrum of CDOM cannot arise solely from a simple superposition of the spectra of numerous independent chromophores. The kinetics of CDOM absorption loss with the monochromatic irradiation were employed to create a simple, heuristic model of photobleaching. This model allowed us to examine the importance of the indirect photobleaching losses in determining the overall photobleaching rates as well as to model the photobleaching of natural waters under polychromatic light fields. Application of this model to natural waters closely predicted the change in the CDOM spectral shape caused by photodegradation. The time scale of this process was consistent with field observations acquired during the summertime for coastal waters in the Middle Atlantic Bight (MAB). The results indicate that the ratio of the photodegradation depth to the mixed layer depth is a key parameter controlling the rate of the photobleaching in surface waters.     

Experiments on Surface Waves Interacting with Flexible Aquatic Vegetation

Surface wave interaction with aquatic vegetation appears to play a key role in coastal hydro-morpho-dynamics. As an example, the presence of a dense meadow at intermediate water depth is usually associated with a stable and resilient shore. Wave-meadow interactions are investigated here by means of physical modelling, with a focus on wave height distribution and hydrodynamics. The central part of a wave flume is covered by flexible artificial seagrass, composed of polyethylene leaves. This vegetation is tested in both near emergent and submerged conditions. The wave height reduction is evaluated by means of a drag coefficient defined from linear wave theory, which contains all the unknowns of the adopted methodology. The behaviour of such a coefficient is investigated as a function of a wave related Reynolds number. The influence of the flexibility of the leaves is also considered, together with a wave frequency parameter. The results show a complex behaviour with three different trends for near rigid, intermediate or highly flexible leaves. Amplitudes of the orbital velocities are investigated and show a fairly good match with the linear wave theory. On the contrary, the mean velocity along the water column appears to be modified by the seagrass for submerged leaves.     

Coanda effect in coastal flows

In the present paper some numerical simulations and experiments were carried out to study jet-wall interaction in shallow waters. Namely, modifications of the hydrodynamic field concerning the interaction of river run-off with a shallow coastal water body, due to the presence of marine structures, were investigated. Stratification effects due to salinity and temperature were neglected, and the interest was focused on barotropic features (Coanda effect). The numerical analysis was carried out by means of shallow water equations, numerically solved by finite difference, and the present method was validated by means of a typical simple-shaped test case. The experiments were carried out in a shallow water tank, flow visualizations were performed, and the velocity field was obtained by PIV. The main features of jet-wall interaction flow were investigated in simple-shaped geometries, and applications were shown for two practical cases: Pescara channel harbour (Adriatic Sea, Italy) and the proposed design of Latina harbour (Tyrrhenian Sea, Italy).     

Improvements on a unified dark matter model

We study, by means of a spherical collapse model, the effect of shear, rotation, and baryons on a generalized Chaplygin gas (gCg) dominated universes. We show that shear, rotation, and the baryon presence slow down the collapse with respect to the simple spherical collapse model. The slowing down in the growth of density perturbation is able to solve the instability of the unified dark matter (UDM) models described in previous papers (e.g., Sandvik et al. 2004) at the linear perturbation level, as also shown by a direct comparison of our model with previous results.