An unsteady wave driver for narrowbanded waves: modeling nearshore circulation driven by wave groups

In this paper, we derive an unsteady refraction–diffraction model for narrowbanded water waves for use in computing coupled wave–current motion in the nearshore. The end result is a variable coefficient, nonlinear Schrödinger-type wave driver (describing the envelope of narrow-banded incident waves) coupled to forced nonlinear shallow water equations (describing steady or unsteady mean flows driven by the short-wave field). Comparisons with experimental data show that good accuracy can be obtained for cases of nonbreaking wave transformation. Numerical simulations show that the interaction of wave groups with longshore topographic nonuniformities generates strong edge wave resonances, providing a generating mechanism for low-order edge waves.     

Zircon M127 – A Homogeneous Reference Material for SIMS U–Pb Geochronology Combined with Hafnium,Oxygen and,Potentially, Lithium Isotope Analysis

In this article, we document a detailed analytical characterisation of zircon M127, a homogeneous 12.7 carat gemstone from Ratnapura, Sri Lanka. Zircon M127 has TIMS‐determined mean U–Pb radiogenic isotopic ratios of 0.084743 ± 0.000027 for ²⁰⁶Pb/²³⁸U and 0.67676 ± 0.00023 for ²⁰⁷Pb/²³⁵U (weighted means, 2s uncertainties). Its ²⁰⁶Pb/²³⁸U age of 524.36 ± 0.16 Ma (95% confidence uncertainty) is concordant within the uncertainties of decay constants. The δ¹⁸O value (determined by laser fluorination) is 8.26 ± 0.06‰ VSMOW (2s), and the mean ¹⁷⁶Hf/¹⁷⁷Hf ratio (determined by solution ICP‐MS) is 0.282396 ± 0.000004 (2s). The SIMS‐determined δ⁷Li value is ?0.6 ± 0.9‰ (2s), with a mean mass fraction of 1.0 ± 0.1 μg g^?1 Li (2s). Zircon M127 contains ~ 923 μg g^?1 U. The moderate degree of radiation damage corresponds well with the time‐integrated self‐irradiation dose of 1.82 × 10¹⁸ alpha events per gram. This observation, and the (U–Th)/He age of 426 ± 7 Ma (2s), which is typical of unheated Sri Lankan zircon, enable us to exclude any thermal treatment. Zircon M127 is proposed as a reference material for the determination of zircon U–Pb ages by means of SIMS in combination with hafnium and stable isotope (oxygen and potentially also lithium) determination.     

The mineralogic transformation of ferrihydrite induced by heterogeneous reaction with bioreduced anthraquinone disulfonate (AQDS) and the role of phosphate

Bioreduced anthraquinone-2,6-disulfonate (AH₂DS; dihydro-anthraquinone) was reacted with a 2-line, Si-substituted ferrihydrite under anoxic conditions at neutral pH in PIPES buffer. Phosphate (P) and bicarbonate (C); common adsorptive oxyanions and media/buffer components known to effect ferrihydrite mineralization; and Fe(II)_aq (as a catalytic mineralization agent) were used in comparative experiments. Heterogeneous AH₂DS oxidation coupled with Fe(III) reduction occurred within 0.13-1 day, with mineralogic transformation occurring thereafter. The product suite included lepidocrocite, goethite, and/or magnetite, with proportions varing with reductant:oxidant ratio (r:o) and the presence of P or C. Lepidocrocite was the primary product at low r:o in the absence of P or C, with evidence for multiple formation pathways. Phosphate inhibited reductive recrystallization, while C promoted goethite formation. Stoichiometric magnetite was the sole product at higher r:o in the absence and presence of P. Lepidocrocite was the primary mineralization product in the Fe(II)_aq system, with magnetite observed at near equal amounts when Fe(II) was high [Fe(II)/Fe(III)] = 0.5 and P was absent. P had a greater effect on reductive mineralization in the Fe(II)_aq system, while AQDS was more effective than Fe(II)_aq in promoting magnetite formation. The mineral products of the direct AH₂DS-driven reductive reaction are different from those observed in AH₂DS-ferrihydite systems with metal reducing bacteria, particularly in presence of P.     

Evaluation of the frequency of skipped spawning in Norwegian spring-spawning herring

Based upon an under-representation of second time spawners on the spawning grounds between 1935 and 1973, researchers have suggested that Norwegian spring-spawning (NSS) herring (Clupea harengus) frequently skip their second spawning event. In order to evaluate this claim with direct evidence, herring were collected over a period of three years from statutory surveys and commercial catches over a wide area covering the feeding, over-wintering and spawning grounds. The development stage of the ovaries was assessed and the intensity of atresia quantified. Only a negligible number of the analysed herring caught were considered likely to skip spawning, thus this phenomenon does not appear to be a common feature of the NSS herring stock at present. In addition, considering the reproductive strategy of herring, it seems doubtful that skipping the second spawning event has ever frequently occurred in this stock.     

Towards molecular understanding of species differences in dioxin sensitivity: initial characterization of Ah receptor cDNAs in birds and an amphibian

2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) and related planar halogenated aromatic hydrocarbons (PHAHs) are highly toxic to most vertebrate animals, but there are dramatic species differences in sensitivity, both within and among vertebrate classes. For example, studies in cultured avian hepatocytes have revealed differential sensitivity of birds to PHAHs [Kennedy et al. (1996). Toxicol. Appl. Pharmacol., 141, 214-230]. Differences in the characteristics or expression of the aryl hydrocarbon receptor (AHR) could contribute to these species differences in PHAH responsiveness. To investigate the molecular mechanism of differential PHAH sensitivity, we have begun to characterize the AHR in white leghorn chicken (Gallus gallus), Pekin duck (Anas platyrhynchos), and common tern (Sterna hirundo), as well as an amphibian, mudpuppy (Necturus maculosus). Partial AHR cDNAs encompassing the helix-loop-helix and PAS domains were cloned and sequenced. Comparison of amino acid sequences in this region indicated a high degree of sequence conservation among the bird species (97% amino acid identity). The percent identity between bird sequences and either mouse or mudpuppy was lower (79%); the mudpuppy AHR was 74% identical to the mouse AHR. Phylogenetic analysis of these and other AHR amino acid sequences showed that the bird and mudpuppy AHRs were more closely related to mammalian and fish AHR1 forms than to fish AHR2. Future studies include the in vitro expression and functional characterization of AHRs from these and other non-mammalian vertebrates.     

Influence of Mn oxides on the reduction of uranium(VI) by the metal-reducing bacterium Shewanella putrefaciens

The potential for Mn oxides to modify the biogeochemical behavior of U during reduction by the subsurface bacterium Shewanella putrefaciens strain CN32 was investigated using synthetic Mn(III/IV) oxides (pyrolusite [β-MnO₂], bixbyite [Mn₂O₃] and K⁺-birnessite [K₄Mn₁₄O₂₇ · 8H₂O]). In the absence of bacteria, pyrolusite and bixbyite oxidized biogenic uraninite (UO₂[s]) to soluble U(VI) species, with bixbyite being the most rapid oxidant. The Mn(III/IV) oxides lowered the bioreduction rate of U(VI) relative to rates in their absence or in the presence of gibbsite (Al[OH]₃) added as a non-redox-reactive surface. Evolved Mn(II) increased with increasing initial U(VI) concentration in the biotic experiments, indicating that valence cycling of U facilitated the reduction of Mn(III/IV). Despite an excess of the Mn oxide, 43 to 100% of the initial U was bioreduced after extended incubation. Analysis of thin sections of bacterial Mn oxide suspensions revealed that the reduced U resided in the periplasmic space of the bacterial cells. However, in the absence of Mn(III/IV) oxides, UO₂(s) accumulated as copious fine-grained particles external to the cell. These results indicate that the presence of Mn(III/IV) oxides may impede the biological reduction of U(VI) in subsoils and sediments. However, the accumulation of U(IV) in the cell periplasm may physically protect reduced U from oxidation, promoting at least a temporal state of redox disequilibria.     

Estuarine shore platforms in Whanganui Inlet, South Island, New Zealand

Whanganui Inlet is a low mesotidal environment where wave energy at the shoreline is limited due to a small fetch, a narrow entrance and tidal flat accretion to intertidal elevations. Wave energy is therefore only an erosive force at high tide and under storm conditions. Despite this low-energy environment extensive shore platforms occur within the inlet. They are sub-horizontal and range in width from 4.1 to 185.2 m with an average of 44.9 m. All the platforms are formed in sandstone of low resistance (mean N-type Schmidt Hammer rebound value of 17 ± 8) and have their seaward edges buried by intertidal sediment flats. The majority of platforms occur at around MHWN level, corresponding to the elevation of those flats. Where wave energy is highest, opposite the inlet's entrance and at those sites with the largest fetch, platforms develop to 0.5–1.0 m below MSL. A higher platform level is also found at MHWS elevations, however it appears to be relict with active erosion of its seaward edge occurring and therefore is most likely related to a higher mid-Holocene sea level. Apart from the location of the lowest platforms little correspondence is found between platform morphology and wave energy. Platform evolution appears to be intrinsically linked to the intertidal sediment flats which determine the degree of surface saturation of the bedrock and, hence, the number of wetting and drying cycles the platforms may undergo. As the seaward edge is buried platform development is primarily through retreat of the landward cliff. This process can, however, be complicated by the migration of intertidal water channels onto the seaward edge of the platforms or relative sea level fall which may rejuvenate landward retreat of the low-tide cliff.     

The measurement of modern sedimentation in estuarine environments in New Zealand

Concern about coastal sedimentation in New Zealand is widespread. As a result, many regional councils now undertake monitoring programmes to understand the rate of change that is occurring within estuarine environments. A variety of techniques are used to understand estuarine infill from short‐term (fixed rods, marker layers, laser surveying) to long‐term studies (coring). Short‐term studies provide detailed but temporally restricted data sets, while coring studies provide long‐term generalised data. This paper reviews the common methods used within New Zealand and suggests that a combination of both methods is the ideal for understanding sediment infill.