Sensitivity of Simulated Hyporheic Exchange to River Bathymetry: The Steinlach River Test Site

This study determines the aspects of river bathymetry that have the greatest influence on the predictive biases when simulating hyporheic exchange. To investigate this, we build a highly parameterized HydroGeoSphere model of the Steinlach River Test Site in southwest Germany as a reference. This model is then modified with simpler bathymetries, evaluating the changes to hyporheic exchange fluxes and transit time distributions. Results indicate that simulating hyporheic exchange with a high-resolution detailed bathymetry using a three-dimensional fully coupled model leads to nested multiscale hyporheic exchange systems. A poorly resolved bathymetry will underestimate the small-scale hyporheic exchange, biasing the simulated hyporheic exchange towards larger scales, thus leading to overestimates of hyporheic exchange residence times. This can lead to gross biases in the estimation of a catchment's capacity to attenuate pollutants when extrapolated to account for all meanders along an entire river within a watershed. The detailed river slope alone is not enough to accurately simulate the locations and magnitudes of losing and gaining river reaches. Thus, local bedforms in terms of bathymetric highs and lows within the river are required. Bathymetry surveying campaigns can be more effective by prioritizing bathymetry measurements along the thalweg and gegenweg of a meandering channel. We define the gegenweg as the line that connects the shallowest points in successive cross-sections along a river opposite to the thalweg under average flow conditions. Incorporating local bedforms will likely capture the nested nature of hyporheic exchange, leading to more physically meaningful simulations of hyporheic exchange fluxes and transit times.     

Velocities of compressional and shear waves in limestones

Carbonate rocks are important hydrocarbon reservoir rocks with complex textures and petrophysical properties (porosity and permeability) mainly resulting from various diagenetic processes (compaction, dissolution, precipitation, cementation, etc.). These complexities make prediction of reservoir characteristics (e.g. porosity and permeability) from their seismic properties very difficult. To explore the relationship between the seismic, petrophysical and geological properties, ultrasonic compressional‐ and shear‐wave velocity measurements were made under a simulated in situ condition of pressure (50 MPa hydrostatic effective pressure) at frequencies of approximately 0.85 MHz and 0.7 MHz, respectively, using a pulse‐echo method. The measurements were made both in vacuum‐dry and fully saturated conditions in oolitic limestones of the Great Oolite Formation of southern England. Some of the rocks were fully saturated with oil. The acoustic measurements were supplemented by porosity and permeability measurements, petrological and pore geometry studies of resin‐impregnated polished thin sections, X‐ray diffraction analyses and scanning electron microscope studies to investigate submicroscopic textures and micropores. It is shown that the compressional‐ and shear‐wave velocities (V_p and V_s, respectively) decrease with increasing porosity and that V_p decreases approximately twice as fast as V_s. The systematic differences in pore structures (e.g. the aspect ratio) of the limestones produce large residuals in the velocity versus porosity relationship. It is demonstrated that the velocity versus porosity relationship can be improved by removing the pore‐structure‐dependent variations from the residuals. The introduction of water into the pore space decreases the shear moduli of the rocks by about 2 GPa, suggesting that there exists a fluid/matrix interaction at grain contacts, which reduces the rigidity. The predicted Biot–Gassmann velocity values are greater than the measured velocity values due to the rock–fluid interaction. This is not accounted for in the Biot–Gassmann velocity models and velocity dispersion due to a local flow mechanism. The velocities predicted by the Raymer and time‐average relationships overestimated the measured velocities even more than the Biot model.     

Ground Water Replenishment with Reclaimed Water in the City of Los Angeles

A two-year pilot study involving the recharge of a ground water basin with reclaimed water was completed in the city of Los Angeles. The city's Department of Water and Power is planning to initiate several ground water recharge projects using reclaimed water in the near future. One such project is the Headworks Recharge Project, the focus of this paper, Approximately 1 cfs of the Los Angeles (LA) River water comprised of 70% tertiary treated reclaimed water was recharged on a two-day wet and five-day dry cycle. The recharge water was then extracted from the basin approximately 1000 feet downgradient. Results showed greater than 4-log removal of coliform bacteria, up to 87% reduction in TOC, and compliance of the product water with federal and state drinking water standards. Model simulation showed after 15 years of recharging 3000 acre-feet per year of the LA River water and extracting about 10,000 acre-feet from the basin, the product water would contain from 5% to 15% reclaimed water. This is well below the maximum allowable limit of 20% stipulated by the California regulation.     

Circulation of bubbly magma and gas segregation within tunnels of the potential Yucca Mountain repository

Following an intersection of rising magma with drifts of the potential Yucca Mountain nuclear waste repository, a pathway is likely to be established to the surface with magma flowing for days to weeks and affecting the performance of engineered structures located along or near the flow path. In particular, convective circulation could occur within magma-filled drifts due to the exsolution and segregation of magmatic gas. We investigate gas segregation in a magma-filled drift intersected by a vertical dyke by means of analogue experiments, focusing on the conditions of sustained magma flow. Degassing is simulated by electrolysis, producing micrometric bubbles in viscous mixtures of water and golden syrup, or by aerating golden syrup, producing polydisperse bubbly mixtures with 40% of gas by volume. The presence of exsolved bubbles induces a buoyancy-driven exchange flow between the dyke and the drift that leads to gas segregation. Bubbles segregate from the magma by rising and accumulating as a foam at the top of the drift, coupled with the accumulation of denser degassed magma at the base of the drift. Steady-state influx of bubbly magma from the dyke into the drift is balanced by outward flux of lighter foam and denser degassed magma. The length and time scales of this gas segregation are controlled by the rise of bubbles in the horizontal drift. Steady-state gas segregation would be accomplished within hours to hundreds of years depending on the viscosity of the degassed magma and the average size of exsolved gas bubbles, and the resulting foam would only be a few cm thick. The exchange flux of bubbly magma between the dyke and the drift that is induced by gas segregation ranges from 1 m³ s⁻¹, for the less viscous magmas, to 10⁻⁸ m³ s⁻¹, for the most viscous degassed magmas, with associated velocities ranging from 10⁻¹ to 10⁻⁹ m s⁻¹ for the same viscosity range. This model of gas segregation also predicts that the relative proportion of erupted degassed magma, that could potentially carry and entrain nuclear waste material towards the surface, would depend on the value of the dyke magma supply rate relative to the value of the gas segregation flux, with violent eruption of gassy as well as degassed magmas at relatively high magma supply rates, and eruption of mainly degassed magma by milder episodic Strombolian explosions at relatively lower supply rates.     

Cytochrome P450 1A1 expression in cetacean skin biopsies from the Indian Ocean

The study describes cytochrome P450 1A1 (CYPA1) expression in the skin of different cetacean species (Megaptera novaeangliae, n = 15; Stenella attenuata, n = 7 and Stenella longirostris, n = 24) from the Mozambique Channel island of Mayotte. Immunohistochemical examination was performed with a monoclonal antibody against scup cytochrome CYPA1. The sex was determined using a molecular approach consisting in the genotyping sex-specific genes. CYPA1 was detected at the junction between epidermis and blubber on dolphins only, mostly in the endothelial cells. Similar observation was obtained in the dermis of one M. novaeangliae. Immunohistochemical slides were scored to evaluate the expression of the CYPA1 and a higher expression was observed in S. longirostris, suggesting a higher exposure to pollutants for this species. The difference of expression between sexes was not significant.     

Proton and Cd adsorption onto natural bacterial consortia: Testing universal adsorption behavior

Bacterial surface adsorption can control metal distributions in some natural systems, yet it is unclear whether natural bacterial consortia differ in their adsorption behaviors. In this study, we conduct potentiometric titration and metal adsorption experiments to measure proton and Cd adsorption onto a range of bacterial consortia. We model the experimental data using a surface complexation approach to determine thermodynamic stability constants. Our results indicate that these consortia adsorb similar extents of protons and Cd and that the adsorption onto all of the consortia can be modeled using a single set of stability constants. Consortia of bacteria cultured from natural environments also adsorb metals to lesser extents than individual strains of laboratory-cultivated species. This study suggests that a wide range of bacterial species exhibit similar adsorption behaviors, potentially simplifying the task of modeling the distribution and speciation of metals in bacteria-bearing natural systems. Current models for bacteria-metal adsorption that rely on pure strains of laboratory-cultivated species likely overpredict the amount of bacteria-metal adsorption in natural systems.     

Practitioner training for building capacity in ICZM

Capacity building has been a much promoted principle of Integrated Coastal Zone Management (ICZM) since its advent beginning in the 1970’s. Although the concept of capacity building includes human resource development, organizational development and institutional and legal framework development, in practice it has often become focussed on the transfer of technical knowledge and procedures to managers and decision makers. The effect of this is often to emphasise and promote sectoral approaches rather than a holistic one as advocated by ICZM. Experiences gained during the EU Intereg IIIB COREPOINT project led to the development of a training programme that progressively reduced its formal lecture-style content and increased opportunity for discussion and delegate participation. It also produced a more uniform and systematic style and structure to presentations, in particular the case studies illustrating the eight EU ICZM principles of best practice, and embedded the ICZM principles and European perspectives of coastal management within the context of the work environment.This paper reviews methods for practitioner-oriented capacity building, and details the evolution of a training course to sensitise and familiarise coastal practitioners with the principles and practices of ICZM, working from local to national to trans-national scales. The lessons learnt from the ICZM capacity development in COREPOINT are identified and it is suggested that these are relevant and applicable to many other ICZM initiatives.     

Regime shifts: Can ecological theory illuminate the mechanisms?

“Regime shifts” are considered here to be low-frequency, high-amplitude changes in oceanic conditions that may be especially pronounced in biological variables and propagate through several trophic levels. Three different types of regime shift (smooth, abrupt and discontinuous) are identified on the basis of different patterns in the relationship between the response of an ecosystem variable (usually biotic) and some external forcing or condition (control variable). The smooth regime shift is represented by a quasi-linear relationship between the response and control variables. The abrupt regime shift exhibits a nonlinear relationship between the response and control variables, and the discontinuous regime shift is characterized by the trajectory of the response variable differing when the forcing variable increases compared to when it decreases (i.e., the occurrence of alternative “stable” states). Most often, oceanic regime shifts are identified from time series of biotic variables (often commercial fish), but this approach does not allow the identification of discontinuous regime shifts. Recognizing discontinuous regime shifts is, however, particularly important as evidence from terrestrial and freshwater ecosystems suggests that such regime shifts may not be immediately reversible. Based on a review of various generic classes of mathematical models, we conclude that regime shifts arise from the interaction between population processes and external forcing variables. The shift between ecosystem states can be caused by gradual, cumulative changes in the forcing variable(s) or it can be triggered by acute disturbances, either anthropogenic or natural. A protocol for diagnosing the type of regime shift encountered is described and applied to a data set on Georges Bank haddock, from which it is concluded that a discontinuous regime shift in the abundance of haddock may have occurred. It is acknowledged that few, if any, marine data are available to confirm the occurrence of discontinuous regime shifts in the ocean. Nevertheless, we argue that there is good theoretical evidence for their occurrence as well as some anecdotal evidence from data collection campaigns and that the possibility of their occurrence should be recognized in the development of natural resource management strategies.     

Late-Quaternary biogeographic scenarios for the brown bear (Ursus arctos), a wild mammal model species

This review provides an up-to-date synthesis of the matrilineal phylogeography of a uniquely well-studied Holarctic mammal, the brown bear. We extend current knowledge by presenting a DNA sequence derived from one of the earliest known fossils of a polar bear (dated to 115 000 years before present), a species that shares a paraphyletic mitochondrial association with brown bears. A molecular clock analysis of 140 mitochondrial DNA sequences, including our new polar bear sequence, provides novel insights into the times of origin for different brown bear clades. We propose a number of regional biogeographic scenarios based on genetic data, divergence time estimates and paleontological records. The case of the brown bear provides an example for researchers working with less well-studied taxa: it shows clearly that phylogeographic models based on patterns of modern genetic variation alone can be substantially improved by including data on historical patterns of genetic diversity in the form of ancient DNA sequences derived from accurately dated samples and by using an approach to divergence-time estimation that suits the data under analysis. Using such approaches it has been possible to (i) establish that the processes shaping modern genetic diversity in brown bears acted recently, within the last three glacial cycles; (ii) distinguish among hypotheses concerning species’ responses to climatic oscillations in accordance with the lack of phylogeographic structure that existed in brown bears prior to the last glacial maximum (LGM); (iii) reassess theories linking monophyletic brown bear populations to particular LGM refuge areas; and (iv) identify vicariance events and track analogous patterns of migration by brown bears out of Eurasia to North America and Japan.     

Bulk organic δC and C/N as indicators for sediment sources in the Pearl River delta and estuary,southern China

Preservation of organic matter in estuarine and coastal areas is an important process in the global carbon cycle. This paper presents bulk δ¹³C and C/N of organic matter from source to sink in the Pearl River catchment, delta and estuary, and discusses the applicability of δ¹³C and C/N as indicators for sources of organic matter in deltaic and estuarine sediments. In addition to the 91 surface sediment samples, other materials collected in this study cover the main sources of organic material to estuarine sediment. These are: terrestrial organic matter (TOM), including plants and soil samples from the catchment; estuarine and marine suspended particulate organic carbon (POC) from both summer and winter. Results show that the average δ¹³C of estuarine surface sediment increases from −25.0 ± 1.3‰ in the freshwater environment to −21.0 ± 0.2‰ in the marine environment, with C/N decreasing from 15.2 ± 3.3 to 6.8 ± 0.2. In the source areas, C₃ plants have lower δ¹³C than C₄ plants (−29.0 ± 1.8‰ and −13.1 ± 0.5‰ respectively). δ¹³C increases from −28.3 ± 0.8‰ in the forest soil to around −24.1‰ in both riverbank soil and mangrove soil due to increasing proportion of C₄ grasses. The δ¹³C_POC increases from −27.6 ± 0.8‰ in the freshwater areas to −22.4 ± 0.5‰ in the marine-brackish-water areas in winter, and ranges between −24.0‰ in freshwater areas and −25.4‰ in brackish-water areas in summer. Comparison of the δ¹³C and C/N between the sources and sink indicates a weakening TOM and freshwater POC input in the surface sedimentary organic matter seawards, and a strengthening contribution from the marine organic matter. Thus we suggest that bulk organic δ¹³C and C/N analysis can be used to indicate sources of sedimentary organic matter in estuarine environments. Organic carbon in surface sediments derived from anthropogenic sources such as human waste and organic pollutants from industrial and agricultural activities accounts for less than 10% of the total organic carbon (TOC). Although results also indicate elevated δ¹³C of sedimentary organic matter due to some agricultural products such as sugarcane, C₃ plants are still the dominant vegetation type in this area, and the bulk organic δ¹³C and C/N is still an effective indicator for sources of organic matter in estuarine sediments.