Production of a molybdophore during metal-targeted dissolution of silicates by soil bacteria

Although many bioessential metals are scarce in natural water and rock systems, microbial secretion of high-affinity ligands for metal extraction from solid phases has only been documented for Fe. However, we have discovered that Mo is extracted from a silicate by a high-affinity ligand (a possible “molybdophore”) secreted by an N₂-fixing soil bacterium. The putative molybdophore, aminochelin, is secreted as a siderophore under Fe-depleted conditions, but is also secreted under Fe-sufficient, Mo-depleted conditions. Presumably, molybdophore production facilitates uptake of Mo for use in Mo enzymes. In contrast, an Fe-requiring soil bacterium without a special Mo requirement only enhances the release of Fe from the silicate. Fractionation of Mo stable isotopes during uptake to cells may provide a “fingerprint” for the importance of chelating ligands in such systems. Many such metal-specific ligands secreted by prokaryotes for extraction of bioessential metals, their effects on Earth materials, and their possible utility in the recovery of economic metals remain to be discovered.     

The ordovician and other post-rosslare series Rocks in Southeast Co. Wexford

Ordovician sediments at Tagoat and Rosslare Harbour are re-described and their relationship to the underlying Rosslare Series discussed. A brief outline of their petrology is given, but it is shown that the fauna is in need of revision before reliable correlations can be made. Similar rocks are recorded near Tomhaggard; amongst these, spotted mudstones imply Ordovician or later intrusions. Undeformec dykes intrusive into the Rosslare Series are believed to be representatives of this phase.     

Copper(II) humate mobility in kaolinite soil

An investigation of the influence of humate on the mobility of copper(II) ions in a kaolinite soil using leaching tests and electrokinetic experiments is reported. The data are interpreted in terms of humate–copper–clay interactions and humate electrical charge. Humate is mostly immobile below pH8 but is more mobile in alkaline conditions (sorption to kaolinite reduces its mobility in neutral conditions). Copper humate complexes are mobile in both acidic and alkaline conditions, but not in neutral conditions where they are sorbed. The dissolved copper humate complexes that form in acidic conditions are positively charged. The net effect of humate is to increase cupric ion mobility in kaolinite soil, especially in alkaline conditions.     

Reconstruction of palaeosalinity using carbon isotopes and benthic associations: a comparison

Carbon and oxygen isotopes were determined on 40 recrystallized shells of Late Jurassic bivalves from the Lusitanian Basin of Portugal. In contrast with the oxygen isotopes, which exhibited considerable diagenetic distortion, the carbon isotopes are thought to preserve a record of the salinity of the Jurassic marginal marine seas in which these bivalves lived. The reconstructed palaeosalinities range from 35%o (euhaline) to 5% (oligohaline). Comparing these values with the palaeosalinity reconstructed from a palaeoecological analysis of 17 stratigraphic levels within the basin, the independently derived values agree in most cases. Strongly differing values are explained as being due to biotic factors and to diagenetic distortion of the isotopic signal; they are less likely to be due to smallscale time-averaging or insufficient microstratigraphic sampling. On the whole, the carbon isotope analyses are thought to produce reasonable palaeosalinity values, although data from infaunal, originally aragonitic bivalves appear to be less reliable than those from epifaunal bivalves with a predominantly or exclusively calcitic shell. As diagenetic alteration of the carbon isotope signal is, however, unpredictable and biotic effects on the isotopic composition are insufficiently known, palaeosalinity reconstructions based on stable isotope data should be supported by palaeoecological data.     

Improved Petrological Modal Analyses from X-ray Powder Diffraction Data by use of the Rietveld Method I. Selected Igneous, Volcanic, and Metamorphic Rocks

Mineral modes have been determined for specimens of eight rocktypes from CuK X-ray powder diffraction data using the Rietveldmethod. The samples include two granites, a granodiorite, adamellite,gabbro, basalt, trachyte, and two granulite-facies metamorphicrocks. Up to eight individual mineral components have been measuredin each sample (no glassy phases were observed), with a detectionlimit of {small tilde}1 wt.%, depending on the mineral assemblage.Marked variations in grain size (i.e., granite vs. trachyte)provide no difficulties for the X-ray method. The X-ray resultscompare very favourably with (1) optical modes determined forthe medium–coarse-grained samples by point counting, (2)normative calculations obtained using locally enhanced catanormand mesonorm software, and (3) corresponding Rietveld modesdetermined, for two samples, from neutron powder data. Wheredifferences occur, these are discussed in relation to the limitationsof each of the methods. The improved accuracy of the X-ray method is due primarily tothe incorporation of the full diffraction profile in the Rietveldanalysis calculations, and the elimination of preferred orientationby collecting the data from samples packed in glass capillaries(i.e., Debye–Scherrer mode). The good agreement of theX-ray and neutron modes shows that the usual problems encounteredwith microabsorption, extinction, and sampling are of littleconcern in these rocks. The results highlight one of the majoradvantages provided by Rietveld modal analysis over the moretraditional ‘reference intensity’ X-ray methods,namely, that the crystal chemistry (and thus the calibrationconstants) of the individual phases can be adjusted dynamicallyduring each individual analysis. This not only provides moreaccurate phase abundances, but also gives important supplementaryinformation about the mineralogy of the major components.     

Measures of Parameter Uncertainty in Geostatistical Estimation and Geostatistical Optimal Design

Studies of site exploration, data assimilation, or geostatistical inversion measure parameter uncertainty in order to assess the optimality of a suggested scheme. This study reviews and discusses measures for parameter uncertainty in spatial estimation. Most measures originate from alphabetic criteria in optimal design and were transferred to geostatistical estimation. Further rather intuitive measures can be found in the geostatistical literature, and some new measures will be suggested in this study. It is shown how these measures relate to the optimality alphabet and to relative entropy. Issues of physical and statistical significance are addressed whenever they arise. Computational feasibility and efficient ways to evaluate the above measures are discussed in this paper, and an illustrative synthetic case study is provided. A major conclusion is that the mean estimation variance and the averaged conditional integral scale are a powerful duo for characterizing conditional parameter uncertainty, with direct correspondence to the well-understood optimality alphabet. This study is based on cokriging generalized to uncertain mean and trends because it is the most general representative of linear spatial estimation within the Bayesian framework. Generalization to kriging and quasi-linear schemes is straightforward. Options for application to non-Gaussian and non-linear problems are discussed.     

Formation Mechanism of Mud Bank Along the Southwest Coast of India

Mud bank formation during the southwest monsoon along the southwest coast of India remains an enigma to the researchers and coastal community in spite of several earlier studies. The present study attempts to unravel the mystery through a high-frequency, season-long time-series observation at Alappuzha, located at the southern part of the west coast of India, a region of frequent occurrence of mud bank. Using 7-month-long weekly time-series observation, we identified strong winds and high waves associated with onset of the southwest monsoon and subsequent three episodic atmospheric low-pressure events (LPEs).With the help of in situ time-series data, we show that the strong winds and high waves associated with southwest monsoon pre-conditions the near shore bottom sediment to bring it into suspension. The high amplitude waves associated with the southwest monsoon, while propagating from the deep water to shallow water region, interact with the bottom initiating bottom-sediment movement and its suspension due to wave refraction and shoaling. The sporadic occurrence of the atmospheric LPEs enhances the process of suspension of bottom sediment in the near shore region leading to the formation of fluid mud. Simulations with a cohesive sediment transport model yielded realistic estimates of sediment transport, in the presence of an onshore current, a pre-requisite for transporting the fluid mud toward the coast. The prevailing onshore upwelling current during the southwest monsoon provides the favorable pre-requisite conditions for transporting the fluid mud through depression channel network towards the coast. Once sufficient quantity and thickness of fluid mud is accumulated in the near shore region, it acts as a wave damper for subsequent high monsoon waves, as indicated by the time-series wave data, leading to the formation of tranquil mud bank region. Depression channel networks extending from the shelf to the coast off Alappuzha, Kochi, Ponnani, Beypore, and Ullal were found in the bathymetric charts, thus explaining why mud banks occur only at few locations in spite of the prevalence of similar monsoon conditions.