Aircraft measurements of oxides of nitrogen along the eastern rim of the Asian continent: Winter observations

Aircraft observations of oxides of nitrogen (NO _y ), measured with a ferrous sulfate converter, over the sea surrounding the Japanese islands (30–43° N, 131–141° E) were carried out in the winter of 1983 and 1984 at altitudes mostly between 3 and 8 km. NO _y defined here is the sum of NO, NO₂, and other unstable oxides of nitrogen that are converted to NO by ferrous sulfate. The main observations were:

1. Over the Pacific Ocean between the latitudes of 30–35° N, the observed NO _y mixing ratio between 3 and 8 km was a fairly constant 200 pptv. The NO mixing ratio increased with altitude from 15 pptv at 3 km to 35 pptv at 7 km.
2. Over the Sea of Japan, tropospheric NO _y mesured between 1 and 6 km started increasing with latitude North of 35° N and reached about 1000 pptv at 40° N.
3. NO _y was measured in an air mass transported from the stratosphere near a tropopause fold region. When the ozone mixing ratio was between 80 and 140 ppbv, the NO _y mixing ratio was about 200 pptv.

     

Cross-Validation of Open-Path and Closed-Path Eddy-Covariance Techniques for Observing Methane Fluxes

Methane ( ${\mathrm {CH}}_{4}$ ) fluxes observed with the eddy-covariance technique using an open-path ${\mathrm {CH}}_{4}$ analyzer and a closed-path ${\mathrm {CH}}_{4}$ analyzer in a rice paddy field were evaluated with an emphasis on the flux correction methodology. A comparison of the fluxes obtained by the analyzers revealed that both the open-path and closed-path techniques were reliable, provided that appropriate corrections were applied. For the open-path approach, the influence of fluctuations in air density and the line shape variation in laser absorption spectroscopy (hereafter, spectroscopic effect) was significant, and the relative importance of these corrections would increase when observing small ${\mathrm {CH}}_{4}$ fluxes. A new procedure proposed by Li-Cor Inc. enabled us to accurately adjust for these effects. The high-frequency loss of the open-path ${\mathrm {CH}}_{4}$ analyzer was relatively large (11 % of the uncorrected covariance) at an observation height of 2.5 m above the canopy owing to its longer physical path length, and this correction should be carefully applied before correcting for the influence of fluctuations in air density and the spectroscopic effect. Uncorrected ${\mathrm {CH}}_{4}$ fluxes observed with the closed-path analyzer were substantially underestimated (37 %) due to high-frequency loss because an undersized pump was used in the observation. Both the bandpass and transfer function approaches successfully corrected this flux loss. Careful determination of the bandpass frequency range or the transfer function and the cospectral model is required for the accurate calculation of ${\mathrm {CH}}_{4}$ fluxes with the closed-path technique.     

Identification of aryl hydrocarbon receptor 2 in aquatic birds; cDNA cloning of AHR1 and AHR2 and characteristics of their amino acid sequences

The toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and its related planar halogenated aromatic hydrocarbons (PHAHs) are mediated by the aryl hydrocarbon receptor (AHR). To investigate the potential sensitivity to PHAHs and the evolutional diversity of AHR in aquatic birds, AHR cDNAs were initially cloned and sequenced from the livers of a black-footed albatross (Diomedea nigripes) and a common cormorant (Phalacrocorax carbo). In this study, we report the identification of two distinct AHR paralog genes in these species. The two full-length AHR cDNAs from albatross were highly divergent (33% overall amino acid identity, and 60% identity in the N-terminal half). Phylogenetic analysis showed that one of them belongs to the AHR1 clade and the other one to the AHR2 clade, which has been identified only from fishes, but not yet from mammals and birds. Albatross AHR1 encoded a 861-residue protein with a predicted molecular mass of 96.7 kDa, and in the case of albatross AHR2, 925 amino acids and 100.7 kDa. From cormorant liver, the full-length AHR1 cDNA and the partial AHR2 cDNA were cloned. This result strongly suggests that bird species also possess two distinct AHR genes (AHR1 and AHR2). To our knowledge, this is the first report on the presence of an AHR2-like isoform in bird species as well as in fish.     

Toxicogenomic analysis of immune system-related genes in Japanese flounder (Paralichthys olivaceus) exposed to heavy oil

Heavy oil contamination is one of the most important environmental issues. Toxicities of polycyclic aromatic hydrocarbons (PAHs), including immune toxicities, are well characterized, however, the immune toxic effects of heavy oil, as a complex mixture of PAHs, have not been investigated. In the present study, we selected Japanese flounder (Paralichthys olivaceus) as a model organism, and observed alteration of immune function by the exposure to heavy oil. To analyze the expression profiles of immune system-related genes, we selected 309 cDNAs from our flounder EST library, and spotted them on a glass slide. Using this cDNA array, alteration of gene expression profiles was analyzed in the kidneys of flounders exposed to heavy oil. Six Japanese flounders (mean body weight: 197 g) were acclimated to laboratory conditions at 19-20 degrees C. Three fish were exposed to heavy oil C (bunker C) at a concentration of 3.8 g/L for 3 days, and the others were kept in seawater without heavy oil and used as the control. After the exposure period, the fish were transferred into control seawater and maintained for 4 days, and then they were dissected and their kidneys were removed. Total RNA was extracted from the kidney samples to use in gene expression analyses. The microarray detected alteration of immune system-related genes in the kidneys of heavy oil-exposed flounders, including down-regulation of immunoglobulin light chain, CD45, major histocompatibility complex class II antigens and macrophage colony-stimulating factor precursor, and up-regulation of interleukin-8 and lysozyme. These results suggest that pathogen resistance may be weakened in heavy oil-exposed fish, causing a subsequent bacterial infection, and then proinflammatory genes may be induced as a defensive response against the infection. Additionally, we found candidate genes for use as biomarkers of heavy oil exposure, such as N-myc downstream regulated gene 1 and heat shock cognate 71 kDa proteins.     

Characterization of Stress Drops on Asperities Estimated from the Heterogeneous Kinematic Slip Model for Strong Motion Prediction for Inland Crustal Earthquakes in Japan

Dense strong motion observation networks provided us with valuable data for studying strong motion generation from large earthquakes. From kinematic waveform inversion of seismic data, the slip distribution on the fault surface of large earthquakes is known to be spatially heterogeneous. Because heterogeneities in the slip and stress drop distributions control the generation of near-source ground motion, it is important to characterize these heterogeneities for past earthquakes in constructing a source model for reliable prediction of strong ground motion. The stress changes during large earthquakes on the faults recently occurring in Japan are estimated from the detailed slip models obtained by the kinematic waveform inversion. The stress drops on and off asperities are summarized on the basis of the stress change distributions obtained here. In this paper, we define the asperity to be a rectangular area whose slip is 1.5 or more times larger than the average slip over the fault according to the previous study for inland crustal earthquakes. The average static stress drops on the asperities of the earthquakes studied here are in the range 6?C23?MPa, whereas those off the asperities are below 3?MPa. We compiled the stress drop on the asperities together with a data set from previous studies of other inland earthquakes in Japan and elsewhere. The static stress drop on the asperity depends on its depth, and we obtained an empirical relationship between the static stress drop and the asperity??s depth. Moreover, surface-breaking asperities seemed to have smaller stress drops than buried asperities. Simple ground motion simulations using the characterized asperity source models reveal that deep asperities generate larger ground motion than shallow asperities, because of the different stress drops of the asperities. These characteristics can be used for advanced source modeling in strong ground motion prediction for inland crustal earthquakes.     

S-wave velocity structures of sediments estimated from array microtremor records and site responses in the near-fault region of the 1999 Chi-Chi,Taiwan earthquake

The 1999 Chi-Chi, Taiwan earthquake, M_W = 7.6, caused severe damage in the near-fault region of the earthquake. In order to evaluate site effects in the near-field strong motions we estimate S-wave velocity structures of sediments at four sites using array records of microtremors. We also recalculated S-wave velocity structures at other four sites previously reported. To show the validity of the estimated S-wave velocity structures we separate empirical site responses from aftershock records using the generalized inversion method and show the agreement between empirical and theoretical site responses. We also show an observed fact that suggests soil nonlinearity during the Chi-Chi earthquake by comparing horizontal-to-vertical spectral ratios (HVRs) for main shock records with HVRs for aftershock records. Then we calculate one-dimensional equivalent-linear site responses using the estimated S-wave velocity structures and the main shock records observed on the surface. It is found that site amplification due to thick (about 6 km) sediments is one of the important factors for explaining the long-period velocity pulses of about 5 to 10 sec observed at sites in the footwall during the Chi-Chi earthquake. It is also found that the theoretical site responses of shallow soft sediments at sites that sustained severe damage in the hanging wall shows significant amplification around 1 sec. As the amplitude of velocity pulses with period around 1 sec is most critical in causing damage to ordinary buildings of moderate heights, our results suggest that the 1-sec period velocity pulses, amplified by the site response of shallow sediments should contribute to the severe damage during the Chi-Chi earthquake.     

Molecular cloning and mRNA expression of cytochrome P4501A1 and 1A2 in the liver of common minke whales (Balaenoptera acutorostrata)

This study presents full-length cDNA sequences of CYP1A1 and 1A2, in common minke whale (Balaenoptera acutorostrata) from the North Pacific. Both CYP1A1 and CYP1A2 cDNAs had an open reading frame of 516 amino acid residues, and predicted molecular masses were 58.3 kDa and 58.1 kDa, respectively. The deduced full-length amino acid sequence of CYP1A1 revealed higher identities with those of sheep (86%) and pig (87%), and that of CYP1A2 was most closely related to human (82%) and monkey CYP1A2 (82%) among species from which CYP1A2 has been isolated so far. Differences in certain conserved and functional amino acid residues of CYP1A1 and 1A2 between common minke whale and other mammalian species indicate the possibility of their specific metabolic function. Concentrations of organochlorine compounds (OCs) including PCBs and DDTs analyzed in common minke whale liver showed no significant correlation with hepatic mRNA expression levels of CYP1A1 and CYP1A2, indicating no induction of these enzymes by such OCs.     

Effects of frozen soil and snow cover on cold‐season soil water dynamics in Tokachi,Japan

Despite the potential impact of winter soil water movements in cold regions, relatively few field studies have investigated cold‐season hydrological processes that occur before spring‐onset of snowmelt infiltration. The contribution of soil water fluxes in winter to the annual water balance was evaluated over 5 years of field observations at an agricultural field in Tokachi, Hokkaido, Japan. In two of the winters, soil frost reached a maximum depth of 0·2 m (‘frozen’ winters), whereas soil frost was mostly absent during the remaining three winters (‘unfrozen’ winters). Significant infiltration of winter snowmelt water, to a depth exceeding 1·0 m, occurred during both frozen and unfrozen winters. Such infiltration ranged between 126 and 255 mm, representing 28–51% of total annual soil water fluxes. During frozen winters, a substantial quantity of water (ca 40 mm) was drawn from deeper layers into the 0–0·2 m topsoil layer when this froze. Under such conditions, the progression and regression of the freezing front, regulated by the thickness of snow cover, controlled the quantity of soil water flux below the frozen layer. During unfrozen winters, 13–62 mm of water infiltrated to a depth of 0·2 m, before the spring snowmelt. These results indicate the importance of correctly evaluating winter soil water movement in cold regions. Copyright © 2010 John Wiley & Sons, Ltd.