Analysis of medaka cytochrome P450 3A homotropic and heterotropic cooperativity

We have previously demonstrated that medaka CYP3A is associated with metabolism of several endobiotics including steroids and bile acids. In this study, we demonstrate that medaka CYP3A catalysis exhibits unusual kinetic behaviors consistent with allosteric interaction which cannot be described by hyperbolic kinetic models. Using 7-benzyloxy-4-(trifluoromethyl)-coumarin (BFC) and nonylphenol as CYP3A substrates, we describe both homotropic and heterotropic cooperative interactions. Given the role of CYP3A in maintaining the homeostatic balance for numerous endobiotics, enzymatic activation/inhibition by endocrine disruptors (EDCs) represents a putative (non-genomic) mechanism for endocrine disruption.     

Impact of sediment organic matter quality on the fate and effects of fluoranthene in the infaunal brittle star Amphiura filiformis

Hydrophobic contaminants, such as polycyclic aromatic hydrocarbons (PAHs) readily adsorb to organic matter. The aim of this study was to determine the importance of the quality of sedimentary organic matter for the uptake, biotransformation and toxicity of the PAH, fluoranthene (Flu), in the infaunal brittle star Amphiura filiformis. Brittle stars were exposed to a base sediment covered by a 2 cm Flu-spiked top layer (30 microg Flu/g dry wt. sed.), enriched to the same total organic carbon content with either refractory or labile organic matter. The labile carbon source was concentrated green flagellate: Tetraselmis spp. The refractory carbon source was lignin from a paper mill. Tissue concentrations of Flu both in disk and arm-fractions were determined as total Flu, parent Flu (i.e. untransformed), aqueous Flu-metabolites, polar Flu-metabolites and tissue residue Flu (i.e. unextractable). Our results showed that sediment particle ingestion is a pathway by which Flu can enter benthic food webs. Flu toxicity (measured as arm-regeneration), but not net accumulation, was dependent on the nutritional quality of the ingested sediment particles. Flu bioaccumulation could not be attributed solely to equilibrium partitioning between organism lipid content and organic content of the sediment. Biotransformation of Flu by brittle stars was very limited and unaffected by organic matter quality. A. filiformis contributed to the downward transport of Flu from the surface sediment to the burrow lining. The limited breakdown of parent Flu by brittle stars and/or microorganisms was relatively higher in burrows compared to surface sediment, and highest in the presence of labile organic matter. Tissue concentrations were higher in disk than in arms, but the proportion of metabolic products relative to parent Flu was higher in arms than in the disk fraction. We estimate that the yearly mobilization of sediment-associated Flu by arm-regeneration in A. filiformis is in the range of 3.8-29.4 microg total Flu eq. m(-2) year(-1) at a sediment concentration of 30 microg Flu/g dry wt. sed.     

Interaction of Surface Waves in a Basin with Floating Broken Ice

The multiscale method is used to obtain asymptotic expansions up to the quantities of the third order for the elevations of the surface of the basin and the velocity potential of motion of liquid particles in the wave disturbances formed in the process of nonlinear interaction of periodic running waves of the first and second harmonics in a homogeneous ideal incompressible liquid of constant finite depth covered with broken ice. The dependences of the amplitude-phase structure of disturbances on the ice thickness, depth of the basin, and the parameters of interacting harmonics are investigated. We estimate the error of evaluation of the characteristics of the formed vertical displacement of the surface of the basin and nonlinear mass transfer introduced by neglecting the curvature of the wave profile in the expression for the velocity potential in deducing the kinematic and dynamic surface boundary conditions for nonlinear approximations.     

Measurement of stress effects (scope for growth) and contaminant levels in mussels (Mytilus edulis) collected from the Irish Sea

The objective of this research was to quantify the impact of pollution along the coastlines of the Irish Sea. Pollution assessment was based on the combined measurement of scope for growth (SFG), and chemical contaminants in the tissues of mussels (Mytilus edulis) collected from 38 coastal sites around the Irish Sea during June-July in 1996 and 1997. On the UK mainland coast, the SFG showed a general trend with a significant decline in water quality in the Liverpool and Morecambe Bay region. High water quality was recorded along the west coast of Wales, as well as southwest England and northwest Scotland (clean reference sites outside the Irish Sea). Along the coast of Ireland there was a similar trend with reduced SFG within the Irish Sea region. SFG was generally low north of Duncannon and then improved north of Belfast. The poor water quality on both sides of the Irish Sea is consistent with the prevailing hydrodynamics and the spatial distribution of contaminants associated with urban/ industrial development. The decline in SFG of mussels on both sides of the Irish Sea was associated with a general increase in contaminant levels in the mussels. Certain contaminants, including PAHs, TBT, sigmaDDT, Dieldrin, gamma-HCH, PCBs, and a few of the metals (Cd, Se, Ag, Pb), showed elevated concentrations. Many of these contaminants were particularly elevated in the coastal margins of Liverpool Bay, Morecambe Bay and Dublin Bay. A quantitative toxicological interpretation (QTI) of the combined tissue residue chemistry and SFG measurements indicated that at the majority of coastal sites, c. 50 to > 80% of the observed decline in SFG was due to PAHs as a result of fossil fuel combustion and oil spills. TBT levels were highest at major ports and harbours, but these concentrations only made a minor contribution to the overall reduction in SFG. At no sites were individual metals accumulated to concentrations that could cause a significant effect on SFG. The study identified many sites where the observed reduction in SFG was far greater than predicted from the limited number of chemical contaminants analysed, thus indicating the presence of additional 'unknown toxicants'. Sewage (containing domestic, agricultural and industrial components) appears to be an important contributor to reduced SFG and linear alkylbenzenes (LABs) and As may provide suitable 'sewage markers'. There was a highly significant positive correlation between SFG and As (P < 0.001). This relationship may be due to reduced As uptake by algal food material and mussels at sites with elevated P04 concentrations (e.g. at sites with sewage inputs). Phosphate is a known competitive inhibitor of As accumulation, at least in algae. The results highlight that further research is required on 'sewage markers' in mussels. The SFG approach therefore provides a rapid, cost-effective and quantitative measure of pollution impact, as well as a means of identifying the causes through a QTI of tissue contaminants levels. It also serves to identify the presence of unidentified toxicants and areas that require further study.     

Low-frequency damping of a moored semisubmersible obtained from simulated extinction tests and mean wave drift forces

Low-frequency damping of a moored semisubmersible drilling platform was obtained from numerical extinction tests simulated in still water and in regular waves and from mean wave drift forces calculated at zero forward speed. The influence of drag forces was represented by the modified Morison equation. The platform as used for the 18th ITTC Comparative Mooring Study was analyzed in irregular beam waves. The computed time series of sway as well as the corresponding sway response spectrum compared favourably with model test measurements, demonstrating that this procedure to determine low-frequency damping can be effective.     

Gravity torques for surface waves

The effects of the gravity torques acting on the angular momentum of surface gravity waves are calculated theoretically. For short crested waves the gravity torque is caused by the force of gravity on the orbiting fluid particles acting down the slopes of the crests and troughs and in the direction parallel to the crests and troughs. The gravity torque tries to rotate the angular momentum vectors, and thus the waves themselves, counterclockwise in the horizontal plane, as viewed from above, in both hemispheres. The amount of rotation per unit time is computed to be significant assuming reasonable values for the along-crest and trough slopes for waves in a storm area. The gravity torque has a frequency which is double the frequency of the waves. For long crested waves the gravity torque acts in the vertical plane of the orbit and tries to decelerate the particles when they rise and accelerate them when they fall. By disrupting the horizontal cyclostrophic balance of forces on the fluid particles (centrifugal force versus pressure force) the gravity torque accounts qualitatively for the three characteristics of breaking waves: that they break at the surface, that they break at the crest, and that the crest breaks in the direction of wave propagation.     

Geophysiology and Parahistology of the Interactions of Organisms with the Environment*

Abstract. Ecology and Global Ecology (GE) are terms by which the relations between the organism (or living matter as a whole) and the environment (or Earth as a whole) have been treated for almost a century. Geophysiology and Parahistology (PH) are terms slowly replacing older scientific thoughts jointly with an increasing number of modifications and alterations of the Darwinian Evolution (DE) concept. Somehow Geophysiology and Parahistology seem to describe evolution in a non-Darwinian domain. According to V.I. Vernadsky (1929,1930,1988) - the great Russian naturalist and biogeochemist - the biogeochemical processes on Earth are controlled by the force of living matter rather than by species associations developing in and with individual ecosystems as expressed by darwinian evolutionary terms. He also claimed that Goethe was incorrectly regarded as a predecessor of DE by some authors (including Darwin) and that “Natur” (nature) and “Lebendige Natur” (the totality of creatures) are two very different things for Goethe. Detailed analyses of microbial mat systems in the German Wadden Sea and in artificial hypersaline WInogradsky columns have shown that the totality of creatures and matter around them i.e., the “lebendige Natur”sensu Goethe or “living matter”sensu Vernadsky of such environments control to a considerable extent the structure, stability. and (geo-)morphology of sediments and thereby the geological structure of the living Earth. These structures do not follow the rules of sedimentation formulated by the laws of Stokes They represent growth structures (Aufwuchs), whose physics and dynamics are controlled by complex fractal systems. The factors controlling the ultimate shape and stabilisation potential of the eventually resulting rocks and fossils are comparable to tissue development in macroorganisms. Also, certain microbial associations in the sub-recent and in the fossil record may be compared to metazoan tissues. Chemical gradients in the sedimentary column, regulated by the interplay of living matter and sluggish (slow-reactive to non-reactive) compounds, combine to create a pattern of porosity and structure of the resulting deposits that clearly indicates microbial influences and especially those of extracellular polymeric substances on the morphology and texture. The combined effects of microbiota or living matter on the sedimentary record are described as parahistology of sediments in analogy of the histology of tissue on a geological scale. This conceptual living tissue made up of microbially generated rocks and ore deposits cycled through metabolic processes and forced into tissue-like structures by microbial biofilms and mats may extend down to the upper mantle of Earth and far up into the stratosphere when Earth is regarded as a living entity over geological periods. We may have to conceive Earth as a living specimen, which is breathing at a frequency of thousands of years instead of the normal physiological breathing rate of man or an insect. Macroorganisms in all terrestrial systems represent the transport and logistic media, which, however, utterly depend on myriads of intra-, inter-, and extracellular microbial symbiotic partners.     

Control over natural resources in ecological economical systems

We consider the problem of stable development of natural economical complexes from the viewpoint of basic balances in an ecological economical system. We construct a basic dynamical model of the complex capable of predicting various scenarios of the industrial development, consumption of natural resources, and pollution of the environment and propose a mechanism of control over the process of development by introducing rent payments for the use of natural resources and ecological fines for the pollution of the environment. The efficiency of the applied model is demonstrated by analysing the process of control over the concentration of biological resources in marine media as an example. We describe the results of numerical experiments performed to show the possibility of creation of the information technology of control over marine bioresources. Translated by Peter V. Malyshev and Dmitry V. Malyshev