Microbiological response to well pumping

To better constrain sampling strategies for observing biologically sensitive parameters in ground water, we vigorously pumped for 120 h a lightly pumped well completed in a confined glacial aquifer while observing how various physical and chemical parameters evolve in the water produced. The parameters commonly monitored when sampling a well stabilized within about an hour, after 5 wellbore volumes were produced; these parameters include temperature, pH, dissolved oxygen, oxidation-reduction potential (Eh), and electrical conductivity. The concentrations of ferrous iron, sulfide, and sulfate and various biological or biologically sensitive parameters, including the concentrations of dissolved hydrogen and methane, direct cell counts, and the microbial community profile, in contrast, required more than 8 h or 36 well volumes to stabilize. We interpret this result to mean that the zone of influence of the wellbore on biologic processes in the aquifer extends beyond the commonly recognized zone where physical properties are affected. A second period of adjustment of these biologically sensitive parameters began after about 50 h of pumping, following displacement of 230 wellbore volumes, and continued to the end of the experiment. During this period, the cell density and the composition of the microbial community suspended in the water samples changed. This finding indicates that the microbial community in and near the wellbore changed in response to pumping and the changes affected aspects of the composition of water produced from the well. The study demonstrates the importance of allowing adequate pumping time when sampling ground water for the analysis of biologically sensitive parameters.     

Very slow erosion rates and landscape preservation across the southwestern slope of the Ladakh Range,India

Erosion rates are key to quantifying the timescales over which different topographic and geomorphic domains develop in mountain landscapes. Geomorphic and terrestrial cosmogenic nuclide (TCN) methods were used to determine erosion rates of the arid, tectonically quiescent Ladakh Range, northern India. Five different geomorphic domains are identified and erosion rates are determined for three of the domains using TCN ¹⁰Be concentrations. Along the range divide between 5600 and 5700 m above sea level (asl), bedrock tors in the periglacial domain are eroding at 5.0 ± 0.5 to 13.1 ± 1.2 meters per million years (m/m.y.)., principally by frost shattering. At lower elevation in the unglaciated domain, erosion rates for tributary catchments vary between 0.8 ± 0.1 and 2.0 ± 0.3 m/m.y. Bedrock along interfluvial ridge crests between 3900 and 5100 m asl that separate these tributary catchments yield erosion rates <0.7 ± 0.1 m/m.y. and the dominant form of bedrock erosion is chemical weathering and grusification. Erosion rates are fastest where glaciers conditioned hillslopes above 5100 m asl by over‐steepening slopes and glacial debris is being evacuated by the fluvial network. For range divide tors, the long‐term duration of the erosion rate is considered to be 40–120 ky. By evaluating measured ¹⁰Be concentrations in tors along a model ¹⁰Be production curve, an average of ~24 cm is lost instantaneously every ~40 ky. Small (<4 km²) unglaciated tributary catchments and their interfluve bedrock have received very little precipitation since ~300 ka and the long‐term duration of their erosion rates is 300–750 ky and >850 ky, respectively. These results highlight the persistence of very slow erosion in different geomorphic domains across the southwestern slope of the Ladakh Range, which on the scale of the orogen records spatial changes in the locus of deformation and the development of an orogenic rain shadow north of the Greater Himalaya. Copyright © 2014 John Wiley & Sons, Ltd.     

Biogeochemical and hydrographic controls on chromophoric dissolved organic matter distribution in the Pacific Ocean

Recent in situ observations of chromophoric dissolved organic material (CDOM) in the Pacific Ocean reveal the biogeochemical controls on CDOM and indicate predictive potential for open-ocean CDOM in diagnosing particulate organic matter (POM) remineralization rates within ocean basins. Relationships between CDOM and concentrations of dissolved oxygen, nutrients and inorganic carbon in the subthermocline waters of the Pacific reflect the relative influences of water mass ventilation and water-column oxidative remineralization. Apparent in situ oxygen utilization (AOU) accounts for 86% and 61% of variance in CDOM abundance, respectively, in Antarctic Intermediate Water and North Pacific Intermediate Water. In the deep waters of the Pacific below the zone of remineralization, AOU explains 26% of CDOM variability. The AOU–CDOM relationship results from competing biogeochemical and advective processes within the ocean interior. Dissolved organic carbon (DOC) is not statistically linked to the CDOM or AOU distributions, indicating that the majority of CDOM production occurs during the remineralization of sinking POM and thus potentially provides key information about carbon export. Once formed in the ocean interior, CDOM is relatively stable until it reaches the surface ocean where it is destroyed by solar bleaching. Susceptibility to bleaching confers an additional tracer-like quality for CDOM in water masses with active convection, such as mode waters that appear as subsurface CDOM minima. In the surface ocean, atypically low CDOM abundance highlights a region of unusually extreme oligotrophy: the subtropical South Pacific gyre. For these hyper-oligotrophic waters, the present CDOM observations are consistent with analysis of in situ radiometric observations of light attenuation and reflectance, demonstrating the accuracy of the CDOM spectrophotometric observations. Overall, we illustrate how CDOM abundance in the ocean interior can potentially diagnose rates of thermohaline overturning as they affect regional biogeochemistry and export. We further show how relative surface ocean CDOM abundances are driven in large part by processes occurring in the deep layers of the ocean. This is particularly significant for the interpretation of the global surface distribution of CDOM using satellite remote sensing.     

Three-dimensional benchmark for variable-density flow and transport simulation: matching semi-analytic stability modes for steady unstable convection in an inclined porous box

This benchmark for three-dimensional (3D) numerical simulators of variable-density groundwater flow and solute or energy transport consists of matching simulation results with the semi-analytical solution for the transition from one steady-state convective mode to another in a porous box. Previous experimental and analytical studies of natural convective flow in an inclined porous layer have shown that there are a variety of convective modes possible depending on system parameters, geometry and inclination. In particular, there is a well-defined transition from the helicoidal mode consisting of downslope longitudinal rolls superimposed upon an upslope unicellular roll to a mode consisting of purely an upslope unicellular roll. Three-dimensional benchmarks for variable-density simulators are currently (2009) lacking and comparison of simulation results with this transition locus provides an unambiguous means to test the ability of such simulators to represent steady-state unstable 3D variable-density physics.     

Assessment of channel dynamics,in-stream structures and post-project channel adjustments in North Carolina and its implications to effective stream restoration

Site assessment and monitoring data were analyzed for 26 stream restoration projects in North Carolina where the channel was reconfigured. Post-project changes in channel capacity were highly variable from site to site, but more than 60% of the projects underwent, on average at a given site, at least a 20% change in channel capacity. An analysis of site and basin geomorphology revealed that large post-construction adjustments were associated with highly dynamic stream channels characterized by a combination of high sediment transport capacity, large sediment supply, and/or easily eroded bank materials. In-stream structures along dynamic, reconfigured channels also exhibited high incidences of damage. Thus, the design and construction of channels in a state of equilibrium, which do not exhibit excessive erosion or deposition along highly dynamic rivers is currently problematic. In light of these findings, a conceptual framework based on geomorphic parameters is put forth to assess the likelihood of project success early in the design process to (1) eliminate high risk sites from consideration of channel reconfiguration and (2) improve upon the implemented management strategies that are ultimately used. It is also argued that where space permits an enhanced natural channel, adjustment approach is likely to be more effective than projects based on natural channel design.     

Effects of the oophagous bivalve Acesta oophaga on the morphology and fecundity of its deep‐sea tubeworm host,Lamellibrachia luymesi

The deep‐sea bivalve Acesta oophaga lives attached to the anterior end of the vestimentiferan tubeworm, Lamellibrachia luymesi, at cold methane seeps. The bivalve is found almost exclusively on female tubeworms, where it consumes the lipid‐rich eggs of L. luymesi that are spawned year round (Biological Bulletin, 209, 2005, 87). It is apparent that A. oophaga benefits directly from this close association, but the consequences for the tubeworm host may be more complicated than just a simple predator–prey interaction. Since A. oophaga completely surrounds the tube opening and plume of the worm, it is likely that its presence would limit oxygen uptake by L. luymesi, thereby inhibiting worm growth and reproduction. We hypothesized that occupied tubeworms would compensate for this by growing larger plumes for oxygen uptake. To explore the effects of bivalve presence/absence on female tubeworms, several morphological features, including body size, plume length, tube diameter, and tube segment length, as well as instantaneous fecundity, were compared. Results suggest that the mere presence of A. oophaga has a significant impact on the morphology of its host worm, as all measures of worm size, except for tube segment length, were significantly greater with clams present. Additionally, instantaneous fecundity was 3.5 times higher in occupied worms, implying that tubeworms are not oxygen‐deprived or energy limited as a result of bivalve presence. Our findings suggest that the association between these two deep‐sea organisms may be a more complex form of symbiosis than the simple predator–prey relationship, as previously thought.     

Mining spatial associations between daily activities and health using EMA–GPS data

The geographical explicit ecological momentary assessment (GEMA) data collection platform provides extremely rich geospatial datasets and is very promising to gain behavior insights linking mobility, activities, and health. However, the task of analyzing these large datasets effectively is not straightforward, because they often involve a large multivariable dimension and rich qualitative data formats. Responding to the call for innovative analytic approaches in GIScience, this article advocates the use of spatial association rule mining (SARM) to extract frequent associations among daily activities, daily mobility, and health, including both physical health (e.g. pain) and mental health (e.g. happiness). This inductive mining approach works robustly with large datasets and is suitable for both qualitative and quantitative studies. A novel visualization technique to analyze the mined rules is also developed and presented.