Three-parameter model of turbulence for the atmospheric boundary layer over an urbanized surface

A modified three-parameter model of turbulence for a thermally stratified atmospheric boundary layer (ABL) is presented. The model is based on tensor-invariant parametrizations for the pressure-strain and pressure-temperature correlations that are more complete than the parametrizations used in the Mellor-Yamada model of level 3.0. The turbulent momentum and heat fluxes are calculated with explicit algebraic models obtained with the aid of symbol algebra from the transport equations for momentum and heat fluxes in the approximation of weakly equilibrium turbulence. The turbulent transport of heat and momentum fluxes is assumed to be negligibly small in this approximation. The three-parameter E ? ε ? 2> model of thermally stratified turbulence is employed to obtain closed-form algebraic expressions for the fluxes. A computational test of a 24-h ABL evolution is implemented for an idealized two-dimensional region. Comparison of the computed results with the available observational data and other numerical models shows that the proposed model is able to reproduce both the most important structural features of the turbulence in an urban canopy layer near the urbanized ABL surface and the effect of urban roughness on a global structure of the fields of wind and temperature over a city. The results of the computational test for the new model indicate that the motion of air in the urban canopy layer is strongly influenced by mechanical factors (buildings) and thermal stratification.     

Uncertainty in the application of the parabolic bay shape equation: Part 2

This paper attempts to highlight issues that are relevant in the application of the Parabolic Bay Shape Equation (PBSE) to a non-equilibrium bay. For this case, the bay of Imbituba in southern Brazil was chosen. The construction of a breakwater to shelter the port of Imbituba in the south of the bay was accompanied by an increase in sedimentation to the port area from an eroding downdrift beach. Superimposed plots of the coastline of the Bay of Imbituba from different years confirm a general trend of accretion of the southern part of the bay accompanied with a retreat of the coastline in the northern part. After the application of the PBSE it became clear that the breakwater caused a change in the equilibrium state of the bay. Between 1947 and 2001 the Bay of Imbituba has changed from a dynamic equilibrium to a natural beach reshaping or self-reshaping. The tendency of the sedimentation of the southern part of the bay can be explained by the SEP associated with the new updrift diffraction point (tip of the breakwater): The seaward position of the SEP predicts a need for additional sediment in order to achieve a stable plan form.     

A simplified approach to backscattering from a rough seafloor withsediment inhomogeneities

Current models used to predict the backscattering strength of the ocean floor are either very involved, requiring geoacoustic parameters usually unavailable for the site in practical applications, or overly simplistic, relying mainly on empirical terms such as Lambert's law. In any case, solutions are very approximate and the problem is still far from being solved. In this paper, a model is presented that avoids empirical functional forms yet requires only a few physical parameters to describe the surficial sediments, often tabulated for typical sediments. The aim of this paper is to develop a simple algorithm for operational prediction of bottom reverberation with only one free parameter, i.e., the volume scattering coefficient. The algorithm combines a two scale surface scattering model with scattered contributions originating from inhomogeneities within the sediments, talking into consideration the rough interface. No specific mechanism is assumed for scattering at the volume inhomogeneities; however, the inhomogeneities are assumed to be uniform and isotropic. The volume scattering coefficient, combined with the bottom attenuation and density and referenced to the surface, plays a role similar to the Lambert's constant in empirical models. The model is exercised on a variety of published datasets for low and moderately high frequency. In general, the model performs very well for both fast and slow sediments, showing a definite improvement over Lambert's law     

Viruses,bacteria, and heterotrophic nanoflagellates in Laptev Sea plankton

The paper considers the concentrations and functional characteristics of viruses, bacteria, and heterotrophic nanoflagellates determined for the first time in the Laptev Sea in August-September, 2014. The abundance of bacteria, viruses, and heterotrophic nanoflagellates varied from 110.1 × 10³ to 828.4 × 10³ cells/mL, from 384.2 × 10³ to 2932.8 × 10³ particles/mL, and from 108 to 651 cells/mL, respectively. The daily bacterioplankton production varied from 4.2 × 10³ to 381.7 × 10³ cells/mL, with an average of 117.6 × 10³ cells/mL. Electron transmission microscopy has for the first time shown that the frequency of visibly infected bacterial cells varied from 0.2 to 2.0% (0.8% on average) of N_B. The average virus-induced mortality of bacteria was 6.3% of bacterioplankton production, with variations ranging from 1.4 to 16.9%. Grazing on bacteria by heterotrophic nanoflagellates contributed more to bacteria mortality than virus-induced bacterial lysis. By grazing on bacteria, heterotrophic nanoflagellates consumed large quantities of viruses located on the surface and inside bacterial cells.     

Late Holocene estuarine–inner shelf interactions; is there evidence of an estuarine retreat path for Tampa Bay, Florida?

The purpose of this study was to determine if and how a large, modern estuarine system, situated in the middle of an ancient carbonate platform, has affected its adjacent inner shelf both in the past during the last, post-glacial sea-level rise and during the present. An additional purpose was to determine if and how this inner shelf seaward of a major estuary differed from the inner shelves located just to the north and south but seaward of barrier-island shorelines. Through side-scan sonar mosaicking, bathymetric studies, and ground-truthing using surface grab samples as well as diver observations, two large submarine sand plains were mapped – one being the modern ebb-tidal delta and the other interpreted to be a relict ebb-tidal delta formed earlier in the Holocene. The most seaward portion of the inner shelf studied consists of a field of lobate, bathymetrically elevated, fine-sand accumulations, which were interpreted to be sediment-starved 3D dunes surrounded by small 2D dunes composed of coarse molluscan shell gravel. Additionally, exposed limestone hardbottoms supporting living benthic communities were found as well. This modern shelf sedimentary environment is situated on a large, buried shelf valley, which extends eastward beneath the modern Tampa Bay estuary. These observations plus the absence of an incised shelf valley having surficial bathymetric expression, and the absence of sand bodies normally associated with back-tracking estuarine systems indicate that there was no cross-shelf estuarine retreat path formed during the last rise in sea level. Instead, the modern Tampa Bay formed within a mid-platform, low-relief depression, which was flooded by rising marine waters late in the Holocene. With continued sea-level rise in the late Holocene, this early embayment was translated eastward or landward to its present position, whereby a larger ebb-tidal delta prograded out onto the inner shelf. Extensive linear sand ridges, common to the inner shelves to the north and south, did not form in this shelf province because it was a low-energy, open embayment lacking the wave climate and nearshore zone necessary to create such sand bodies. The distribution of bedforms on the inner shelf and the absence of seaward-oriented 2D dunes on the modern ebb-tidal delta indicate that the modern estuarine system has had little effect on its adjacent inner shelf.     

Simulating a heavy metal spill under estuarine conditions: Effects on the clam Scrobicularia plana

We describe the effect of heavy metals Zn, Cd, Pb and Cu on the induction of methallothioneins on the clam Scrobicularia plana along a salinity gradient simulated under laboratory conditions. The clams were exposed to constant heavy metal concentrations in a dynamic estuary simulator during a 15-day assay to investigate possible induction of metal-binding proteins in them. The concentration of heavy metals in water was analysed. Clams were analysed for methallothionein concentrations. The speciation of Zn, Cd, Pb and Cu along the salinity gradient was modelled. Zn showed the highest concentrations and its prevalent species was the free ion. Intersite differences have been observed in methallothionein concentration and related to the salinity gradient. It seems that synthesis of methallothioneins is the result of physiological forces acting in concert with the changes in the chemical speciation of metals, owing to the trace metals uptake is controlled by means of an interaction of physiology and physicochemistry.     

Theoretical wind wave frequency spectra in shallow water

The method developed by Wen et al. (1988 a) for deriving theoretical wind wave frequency spectrum in deep water is extended to the case of water of finite depth, in which a parameter η=H/d is introduced, where H and d represent the average wave height and water depth respectively. The derived spectra reduce to those in deep water when η=0. The case of η=1/2 corresponds to waves impending to break because of the effect of the bottom. Simplified forms of spectra are given. The theoretical results agree with the observed spectra well.     

The concentration and distribution of dimethyl sulfide in the marine atmospheric boundary layer near the equator

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Random wave-current interactions in water of varying depth

Refraction of incoherent random gravity waves with currents and bottom topography results in spatial variations in the spectral characteristics of the free surface. Prediction of such variations based on the radiation transfer equation is in a simple analytic form for the case of one dimensional inhomogeneities in currents and topography. This analytic form is examined in terms of two-dimensional wave number- and polar frequency-direction spectra along the associated dynamic and kinematic constraints relevant to wave breaking and reflection. Results are specialized to the simplest case of horizontal shear currents in deep and shallow water with explicit examples to illustrate the relative and combined effects of currents and topography on free surface spectra.