Major variability modes and wind patterns over the Sea of Japan and adjacent areas

The expansion of wind fields observed at fixed times (four times daily) in complex empirical orthogonal functions is performed for the Japan Sea area (34°–53° N, 127°–143° E). The wind fields are taken from the 1998–2004 NCEP/NCAR Reanalysis data with better spatial resolution (1° × 1°) than the standard product, which are publicly available on the Internet. Major modes of wind variability in the Japan Sea area are identified. The modes determine a general direction of air-mass transport throughout a year, zonal and meridional modulation, and a cyclonic and an anticyclonic eddy component. Objective classification of wind fields with respect to the prevailing flow direction is performed, and wind stress and wind-curl patterns are obtained for major events in the cold and warm periods of the year. The pattern obtained can be used in hydrodynamic numerical models of the general circulation of the Japan Sea.     

Effects of scattering and resonance on energy dissipation of an internal tide in a narrow shelf

The effects of scattering and resonance on the energy dissipation of an internal tide were investigated using a two-dimensional model which is a reassembled version of the theoretical generation model devised by Rattray et al. (1969) for internal tide. The basic character of the scattering process at the step bottom was first investigated with a wide shelf model. When the internal wave incited from a deep region (Region II) into the shallow shelf region (Region I), a passing wave into the shallow region, a reflected wave into the deep region, and a beam-like wave, i.e. a scattered wave (SW), emanated at the step bottom. The SW, which consists of the superposition of numerous internal modes, propagated upward/downward into both regions. The general properties of the SW were well expressed around the shelf edge, even in the present model with viscosity effect. The amplitude of the SW decreased dramatically when the depth of the velocity maximum of the incident internal wave in Region II corresponded with the depth of the shelf edge. In the narrow shelf model, where the decay distance of the internal wave in Region I is longer than the shelf width, the incident internal wave reflected at the coast to form a standing wave. When the internal wave in Region I is enhanced by the resonance, the energy of the SW in Region II is also intensified. Furthermore, the energy of the modes in Region II predominated when the velocity maximum is identical to that of the dominant mode in Region I. These results suggest that the spatial scale of shelf region is a very important factor governing the energy dissipation of the internal tide through reflection and scattering in a narrow shelf.     

Water vapor in the atmosphere over the northern Tien Shan

Refined data of systematic measurements of total water vapor in the atmosphere from May 1980 to April 2005 are presented. The data were obtained at the Issyk Kul atmospheric-monitoring station by the method of solar molecular-absorption spectroscopy. Over 25 years, the annual mean water-vapor content in the atmosphere increased by 4.5% at a mean rate of increase of 0.18% per year. However, the water-vapor content decreased in the last five years. The results of statistical processing of experimental data (general statistical characteristics, correlation coefficients, composite oscillations) are described. A refined model is proposed for forecasts of temporal variations in the monthly mean and annual mean water-vapor contents for the coming years. The model includes a linear trend and the sum of oscillations with periods close to the periods of a number of well-known geophysical phenomena. Regression equations are proposed to relate the water-vapor content in the atmospheric column to the surface temperature and absolute humidity.     

Sources and biogeochemical cycling of particulate selenium in the San Francisco Bay estuary

As part of a study of estuarine selenium cycling, we measured the concentration, chemical form (speciation), and distribution of particulate selenium under various river flow conditions in the North San Francisco Bay (from the Golden Gate to the Sacramento and San Joaquin Rivers). We also conducted laboratory studies on the accumulation of selenium by phytoplankton, the critical first step in the transformation of dissolved to particulate selenium. Total particulate selenium concentration in the North SF Bay was relatively constant between high and low flow periods, ranging spatially from 0.05 to 0.35 nmol l⁻¹ and comprising between 5 and 12% of the total water column selenium inventory. Mean concentrations were generally highest in the Carquinez Strait–Suisun Bay region (salinity 0–17) and lowest in Central Bay. However, selenium content of suspended particles varied with river flow, with higher content during low flow (9.76 ± 4.17 nmol g⁻¹; mean ± sd; n = 67) compared to high flow (7.10 ± 4.24 nmol g⁻¹; n = 39). Speciation analyses showed that most particulate selenium is organic selenide (45 ± 27%), with a smaller proportion (typically <30%) of adsorbed selenite + selenate and a varying proportion (35 ± 28%) of elemental selenium. Based on the amount of elemental selenium in the seston (total suspended material), we calculate that resuspension of estuarine sediments could contribute 29–100% of particulate selenium in the water column. While selenium content of SF Bay seston (>0.4 μm) is relatively unenriched compared to phytoplankton (13.6–155 nmol g⁻¹ dry weight) on a mass basis, when normalized to carbon or nitrogen, seston contains a similar selenium concentration to SF Bay sediments or phytoplankton cultures. SF Bay seston is thus comprised of selenium-rich phytoplankton and phyto-detritus, but also inorganic clay mineral particles that effectively “dilute” total particulate selenium. Selenium concentrations in algal cultures (11 species) exposed to 90 nmol l⁻¹ selenite show relatively large differences in selenium accumulation, with the diatoms, chlorophytes and cryptophytes generally having lower selenium cell content (3.8 ± 2.7 × 10⁻⁹ nmol selenium cell⁻¹) compared to the dinoflagellates (193 ± 73 × 10⁻⁹ nmol selenium cell⁻¹). Because phytoplankton are such a rich (but variable) source of selenium, their dynamics could have a profound effect on the particulate selenium inventory in the North SF Bay.     

Late-Quaternary supply of terrigenous organic matter to the Congo deep-sea fan (ODP site 1075): implications for equatorial African paleoclimate

Late-Quaternary sections (about 1 Ma) from the Congo deep-sea fan (ODP Leg 175, site 1075) were used to reconstruct the terrigenous organic matter supply to the easternmost equatorial Atlantic Ocean. Variations in quantity and quality of the riverine organic matter reflect the interaction between the paleoclimatic development within the continental catchment area and the paleoceanographic conditions in the Congo river plume. To characterize the delivery of organic matter from terrigenous and marine sources, we used elemental and bulk carbon isotopic analyses, Rock-Eval pyrolysis, lignin chemistry, and organic petrology. High-amplitude fluctuations occurring about every 15-25 ka reveal a mainly precessional control on organic sedimentation. Results from Rock-Eval pyrolysis indicate a mixed kerogen type III/II, as would be anticipated in front of a major river. Fluctuations in T_max from Rock-Eval pyrolysis demonstrate pronounced cyclic changes in the delivery of low- and high-mature organic matter. Contribution of the low-mature organic fraction was strongest during warm climates supporting enhanced marine production offshore of the Congo. Organic petrological observations confirm the existence of abundant terrigenous plant tissues, both non-oxidized (vitrinite) and oxidized (inertinite). Charcoal-like organic matter (fusinite) is attributed to periods of increased bush fires in the continental hinterland, and implies more arid climatic conditions. Results from ratios of specific phenolic lignin components suggest that terrigenous organic matter in Late-Quaternary sections of site 1075 mainly derives from non-woody angiosperm tissue, i.e., grasses and leaves. Correlation between the amount of specific lignin phenols and the bulk '¹³C_org signature fosters the conclusion that an appreciable amount of the terrigenous organic fraction derives from C4 plant matter. This may cause an underestimation of the terrigenous proportion of bulk organic matter when assessments are based on bulk carbon isotopic signatures alone.     

Trace metals and hydrocarbons in sediments from the Southampton water region,with particular reference to the influence of oil refinery effluent

The concentrations of a number of trace metals (Co, Ni, Cu, Zn, Ag, Cd and Hg) have been determined in sediments from cores collected in the Southampton Water region. Measurements of total hydrocarbons were also made on several of the cores. Markedly elevated concentrations of copper, up to 362 μg/g dry wt, were found in sediments which were collected close to the discharge points of oil refinery outfalls and which also showed concentrations of total hydrocarbons considerably greater than the background levels for the estuary. The results of selective chemical extractions showed that much of the copper was present in the non-lattice fraction of the sediment. Although the concentrations of Co, Ni, Zn and Cd were significantly correlated with those of copper in the core showing the highest concentrations of this element, these metals were not enhanced in comparison with the levels found in several other parts of the estuary. Variations in concentrations of metals in sediments throughout the estuary were not correlated with differences in organic carbon content.     

Effects of salinity downshock on dimethylsulfide production

During time-series observations in Sagami Bay, Japan, the concentration of dissolved dimethylsulfoniopropionate (DMSP_d), a precursor of dimethylsulfide (DMS), was negatively correlated with salinity. In the laboratory, low-salinity shock reduced DMS production rates of the natural bacterial community and induced rapid DMSP release from a dinophyte, Heterocapsa triquetra, suggesting that low-salinity shock reduced DMSP_d consumption but enhanced DMSP_d production, which agrees with the negative correlation between DMSP_d and salinity observed in Sagami bay. In addition, low-salinity shock did not affect DMSP lyase activity of H. triquetra. Low-salinity shock would increase the contribution from algae in DMS production, leading to an increase in potential DMS productivity in the environment.     

Alboran Sea late cenozoic tectonic and stratigraphic evolution

Analysis of airgun seismic profiles from the Alboran Sea reveals a complex morphostructure with margins, basins, and structural highs. North of the Alboran Ridge, south-facing margins have a passive style of evolution, with thick progradational sequences of post-Messinian deposits, whereas north-facing margins are tectonized along structural highs with reduced sediment cover. Basins are extensional features developed since the Early Miocene by mechanisms of tectonic escape and pull-apart, under generalized northwest-southeast to north-south compression. Depositional sequences in this semi-land-locked sea were controlled by the local tectonism and influenced by global sea-level oscillations.     

Histopathological biomarkers in estuarine fish species for the assessment of biological effects of contaminants

The increasing emphasis on the assessment and monitoring of estuarine ecosystems has highlighted the need to deploy appropriate biological indices for these locations. Fish diseases and histopathology, with a broad range of causes, are increasingly being used as indicators of environmental stress since they provide a definite biological end-point of historical exposure. This study reports on the histopathological alterations observed in selected organs and tissues of three species of estuarine fish (Platichthys flesus, Pomatoschistus minutus and Zoarces viviparus), captured from four British estuaries (the Tyne, Tees, Mersey and Alde), differently impacted by contaminants, including PAHs. A biannual sampling regime was used to identify the important seasonal variations that occur in terms of the observed biological effects. Inflammatory lesions and hepatocellular fibrillar inclusions attained their highest prevalence in P. flesus captured from the Tyne, Tees and Mersey. The presence of pre-neoplastic and neoplastic toxicopathic lesions was highest in P. flesus captured from these sites, when compared to fish from the Aide reference site. In particular, the prevalence of hepatic foci of cellular alteration (up to 43.3%) and hepatocellular adenoma (up to 10%) were highest in P. flesus captured from the Mersey estuary. Intersex (ovotestis) was only recorded in male P.flesus captured from the Mersey estuary (up to 8.3%) and from male Z. viviparous captured from the Tyne estuary (25%). Pathologies associated with the gill and the kidney were also most prevalent in fish captured from the Tyne, Tees and Mersey estuaries. This study has successfully applied histopathology to an estuarine monitoring program, both for the recording of toxicopathic lesions in the liver and other organs, and for the detection of the endpoint of endocrine disruption, intersex. As such, it provides a powerful integrative tool for the assessment of biological effects of contaminants in these environments.