Short chain ladderanes: Oxic biodegradation products of anammox lipids

Anammox, the microbial anaerobic oxidation of ammonium by nitrite to produce dinitrogen gas, has been recognized as a key process in both the marine and freshwater nitrogen cycles, and found to be a major sink for fixed inorganic nitrogen in the oceans. Ladderane lipids are unique anammox bacterial membrane lipids that have been used as biomarkers for anammox bacteria in recent and past environmental settings. However, the fate of ladderane lipids during diagenesis is as of yet unknown. In this study, we performed oxic degradation experiments (at 20-100 °C) with anammox bacterial biomass to simulate early diagenetic processes occurring in the water column and at the sediment-water interface. Abundances of C₁₈ and C₂₀ ladderane lipids decreased with increasing temperatures, testifying to their labile nature. The most abundant products formed were ladderane lipids with a shorter alkyl side chain (C₁₄ and C₁₆ ladderane fatty acids), which was unambiguously established using two-dimensional NMR techniques on an isolated C₁₄-[3]-ladderane fatty acid. The most pronounced production of these short-chain lipids was at 40 °C, suggesting that degradation of ladderane lipids was microbially mediated, likely through a β-oxidation pathway. An HPLC-MS/MS method was developed for the detection of these ladderane alteration products in environmental samples and positively tested on various sediments. This showed that the ladderanes formed during degradation experiments also naturally occur in the marine environment. Thus, short-chain ladderane lipids may complement the original longer-chain ladderane lipids as suitable biomarkers for the detection of anammox processes in past depositional environments.     

Bounding difference: Intersectionality and the material production of gender, caste, class and environment in Nepal

Current theorising in human geography draws attention to the relational emergence of space and society, challenging ideas of difference that rely on fixed identities and emphasising the importance of the everyday in the production of social inequalities. Similarly, feminist political ecology has emphasised the role of ‘nature’ or ‘environment’ in the production of subjectivities such that ideas of gender and nature arise in relation to each other. In this paper I build from these insights to explore the ways in which the embodied performance of gender, caste and other aspects of social difference collapse the distinction between the material and the symbolic. Symbolic ideas of difference are produced and expressed through embodied interactions that are firmly material. Through this kind of conceptualisation, I hope to push forward debates in geography on nature and feminist political ecology on how to understand the intersectional emergence of subjectivities, difference and socio-natures. Importantly, it is the symbolic meanings of particular spaces, practices and bodies that are (re)produced through everyday activities including forest harvesting, agricultural work, food preparation and consumption, all of which have consequences for both ecological processes and social difference. Through the performance of everyday tasks, not only are ideas of gender, caste and social difference brought into view, but the embodied nature of difference that extends beyond the body and into the spaces of everyday life is evident. I use ethnographic evidence from rural Nepal to explore the ways in which boundaries between bodies, spaces, ecologies and symbolic meanings of difference are produced and maintained relationally through practices of work and ritual.     

Hydrogeochemical stratification of the unconfined Samobor aquifer (Zagreb,Croatia)

In the western part of the city of Zagreb, Croatia, hydrogeochemical and isotopic investigations of the Samobor aquifer were carried out with the aim of determining the differences in hydrogeochemical characteristics at increasing aquifer depths. The aquifer comprises 40-m thick gravelly–sandy deposits, with lenses and interlayers of silt and clay. The analyses have proven that with increasing aquifer depth, there are decreases in groundwater temperature and the values of electrical conductivity and increases in the sodium, iron and manganese concentrations. The δ¹³C distribution shows an evident increase in biogenic carbon concentrations with increasing aquifer depth. The measured specific ¹⁴C activities showed that the deeper part of the aquifer is characterized by slow water exchange, while the shallower part is influenced by current recharge, although the pumping wells located on the well-field downstream penetrate the aquifer fully. A direct exchange of water from the Sava River and groundwater occurs in the near vicinity of the river. This exchange weakens further away, while the difference in hydrogeochemical characteristics between the Sava River water and groundwater increases.     

Numerical modelling of the effects of foundation scour on the response of a bridge pier

Foundation scour can have a detrimental effect on the performance of bridge piers, inducing a significant reduction of the lateral capacity of the footing and accumulation of permanent settlement and rotation. Although the hydraulic processes responsible for foundation scour are nowadays well known, predicting their mechanical consequences is still challenging. Indeed, its impact on the failure mechanisms developing around the foundation has not been fully investigated. In this paper, numerical simulations are performed to study the vertical and lateral response of a scoured bridge pier founded on a cylindrical caisson foundation embedded in a layer of dense sand. The sand stress–strain behaviour is reproduced by employing the Severn-Trent model. The constitutive model is firstly calibrated on a set of soil element tests, including drained and undrained monotonic triaxial tests and resonant column tests. The calibration procedure is implemented considering the stress and strain nonuniformities within the samples, by simulating the laboratory tests as boundary value problems. The numerical model is then validated against the results of centrifuge tests. The results of the simulations are in good agreement with the experimental results in terms of foundation capacity and settlement accumulation. Moreover, the model can predict the effects of local and general scour. The numerical analyses also highlight the impact of scouring on the failure mechanisms, revealing that the soil resistance depends on the hydraulic scenario.

     

Variability in drift macroalgal abundance in relation to biotic and abiotic factors in two seagrass dominated estuaries in the Western Gulf of Mexico

We examined the spatial and temporal variability in drift macroalgal abundance in two seagrass dominated estuarine systems on the Texas coast: Redfish Bay (in the Copano-Aransas Estuary) and Lower Laguna Madre. Measurements of benthic macroalgal variability were made in conjunction with a suite of biotic (seagrass biomass, percent cover, blade width and length, shoot density, epiphyte biomass, seagrass blade C:N ratios, and drift macroalgal abundance and composition) and abiotic (inorganic nitrogen and phosphorus concentrations, chlorophylla, total suspended solids, light attenuation, salinity, temperature, total organic carbon and porewater NH₄ ⁺) indicators. All parameters were measured at 30 sites within each estuary semiannually from July 2002 to February 2004. Principal components analysis (PCA) was used to examine relationships between drift macroalgal abundance and biotic and abiotic parameters. In both Redfish Bay and Lower Laguna Madre, drift macroalgal distribution was widespread, and during three of four sampling periods, abundance was equal to abovegro und biomass ofThalassia testudinum, the dominant seagrass. Drift macro algal abundance was highly variable within sites, between sites, and between seasons in both estuaries. No significant differences in drift macroalgal abundance were found between Redfish Bay and Lower Laguna Madre. In Redfish Bay, drift macroalgae (90.1±10.2 gm⁻²) tended to accumulate in bare patches within seagrass beds. In Lower Laguna Madre, drift macroalgae (72.7±10.7 gm⁻²) tended to accumulate in areas of dense seagrass cover rather than in bare areas. We found no relationship between drift macroalgal abundance and low (<2μM) water column nutrient concentrations, and although several of our measured parameters were related to drift macroalgal abundance, none alone sufficiently explained the variability in abundance noted between the two estuarine systems. The contrasting patterns of macroalgal accumulation between Redrish Bay and Lower Laguna Madre likely reflect differences in water circulation characteristics between the two regions as dictated by local physiography, in cluding the shape and orientation of the lagoons, with seasonal variations in macroalgal abundance related to changes in freshwater inflow and nutrient loading.     

Performance of masonry buildings during the Emilia 2012 earthquake

The earthquake sequence started on May \(20\) th 2012 in Emilia (Italy) affected a region where masonry constructions represent a large part of the existing building stock and the construction of new modern masonry buildings is a common practice. The paper is focused on the performance of common architectural configurations, typical for residential or business use. The large majority of old masonry buildings is made of fired clay bricks. The seismic performance of these buildings is particularly interesting since major past earthquakes in Italy affected areas with mainly stone masonry structures. Apart from examples showing systematic or peculiar structural deficiencies governing the vulnerability of several buildings, the overall seismic performance of these structures to repeated shaking, with PGA as large as 0.25–0.3 g was rather good, despite the major part of them were only conceived for carrying vertical loads. In fact, seismic design is mandatory in the area only since 2003. Modern low-rise masonry buildings erected after this date and incorporating seismic design and proper detailing resulted in most cases practically undamaged. The examples reported in the paper allow an evaluation of the superior performance of seismically designed modern masonry buildings in comparison to older ones.     

The added value of joint PP–PS inversion for reservoir characterization: A case study using Jubarte PRM seismic data (offshore Brazil)

The added value of the joint pre-stack inversion of PP (incident P-wave and reflected P-wave) and PS (incident P-wave and reflected S-wave) seismic data for the time-lapse application is shown. We focus on the application of this technique to the time-lapse (four-dimensional) multicomponent Jubarte field permanent reservoir monitoring seismic data. The joint inversion results are less sensitive to noise in the input data and show a better match with the rock physics models calibrated for the field. Further, joint inversion improves S-impedance estimates and provides a more robust quantitative interpretation, allowing enhanced differentiation between pore pressure and fluid saturation changes, which will be extremely useful for reservoir management. Small changes in reservoir properties are expected in the short time between the time-lapse seismic acquisitions used in the Jubarte project (only 1 year apart). The attempt to recover subtle fourth-dimensional effects via elastic inversion is recurrent in reservoir characterization projects, either due to the small sensitivity of the reservoirs to fluid and pressure changes or the short interval between the acquisitions. Therefore, looking for methodologies that minimize the uncertainty of fourth-dimensional inversion outputs is of fundamental importance. Here, we also show the differences between PP only and joint PP–PS inversion workflows and parameterizations that can be applied in other projects. We show the impact of using multicomponent data as input for elastic seismic inversions in the analysis of the time-lapse differences of the elastic properties. The larger investment in the acquisition and processing of multicomponent seismic data is shown to be justified by the improved results from the fourth-dimensional joint inversion.     

Geophysical Finite-Element Simulation Tool (GeoFEST): Algorithms and Validation for Quasistatic Regional Faulted Crust Problems

GeoFEST (Geophysical Finite Element Simulation Tool) is a two- and three-dimensional finite element software package for the modeling of solid stress and strain in geophysical and other continuum domain applications. It is one of the featured high-performance applications of the NASA QuakeSim project. The program is targeted to be compiled and run on UNIX systems, and is running on diverse systems including sequential and message-passing parallel systems. Solution to the elliptical partial differential equations is obtained by finite element basis sampling, resulting in a sparse linear system primarily solved by conjugate gradient iteration to a tolerance level; on sequential systems a Crout factorization for the direct inversion of the linear system is also supported. The physics models supported include isotropic linear elasticity and both Newtonian and power-law viscoelasticity, via implicit quasi-static time stepping. In addition to triangular, quadrilateral, tetrahedral and hexahedral continuum elements, GeoFEST supports split-node faulting, body forces, and surface tractions. This software and related mesh refinement strategies have been validated on a variety of test cases with rigorous comparison to analytical solutions. These include a box-shaped domain with imposed motion on one surface, a pair of strike slip faults in stepover arrangement, and two community-agreed benchmark cases: a strike slip fault in an enclosing box, and a quarter-domain circular fault problem. Scientific applications of the code include the modeling of static and transient co- and post-seismic earth deformation, Earth response to glacial, atmospheric and hydrological loading, and other scenarios involving the bulk deformation of geologic media.