Microbial spatial variability: An example from the Celtic Sea

In July 2004, dominant populations of microbial ultraplankton (<5 μm), in the surface of the Celtic Sea (between UK and Eire), were repeatedly mapped using flow cytometry, at 1.5 km resolution over a region of diameter 100 km. The numerically dominant representatives of all basic functional types were enumerated including one group of phototrophic bacteria (Syn), two groups of phytoplankton (PP, NP), three groups of heterotrophic bacterioplankton (HB) and the regionally dominant group of heterotrophic protists (HP).The distributions of all organisms showed strong spatial variability with little relation to variability in physical fields such as salinity and temperature. Furthermore, there was little agreement between distributions of different organisms. The only linear correlation consistently explaining more than 50% of the variance between any pairing of the organism groups enumerated is between two different groups of HB. Specifically, no linear, or non-linear, relationship is found between any pairings of SYB, PP or HB groups with their protist predators HP. Looking for multiple dependencies, factor analysis reveals three groupings: Syn, PP and low nucleic acid content HB (LNA); high nucleic acid content HB (HNA); HP and NP. Even the manner in which the spatial variability of Syn, PP and HB abundance varies as a function of lengthscale (represented by a semivariogram) differs significantly from that for HP. In summary, although all microbial planktonic groups enumerated are present and numerically dominant throughout the region studied, at face value the relationships between them seem weak.Nevertheless, the behaviour of a simple, illustrative ecological model, with strongly interacting phototrophs and heterotrophs, with stochastic forcing, is shown to be consistent with the observed poor correlations and differences in how spatial variability varies with lengthscale. Thus, our study suggests that a comparison of microbial abundances alone may not discern strong underlying trophic interactions. Specific knowledge of these processes, in particular grazing, will be required to explain the causes of the observed microbial spatial variability and its resulting consequences for the functioning of the ecosystem.     

Strontium in coral aragonite: 3. Sr coordination and geochemistry in relation to skeletal architecture

Use of the coral Sr palaeothermometer assumes that the Sr in coral skeletons is substituted randomly for Ca in the aragonite structure. The presence of Sr in additional phases e.g., strontianite, or the non random distribution of Sr across metal sites in aragonite, would complicate the Sr/Ca-sea surface temperature relationship. We have used Sr K-edge microEXAFS (extended X-ray absorption fine structure) to determine the structural state of Sr across selected microvolumes of four coral skeletons (Porites lobata, Acropora palmata, Pavona clavus, and Montastrea annularis). We used a 5 × 3 μm beam to analyse specific areas of the coral skeletal architecture, i.e., centres of calcification, fasciculi, and dissepiments. All EXAFS analyses refine, within error, to an ideally substituted Sr in aragonite, and we found no evidence of strontianite or partly ordered structural states. Anisotropy in the first shell responses results from the fact that the analysed microvolumes are not necessarily averaged for the responses of all crystal orientations in the aragonite. Although secondary ion mass spectrometry confirmed that Sr/Ca composition can vary substantially between skeletal components, we find no evidence for any contrast in Sr structural state. Sr heterogeneity may result from kinetic effects, reflecting complex disequilibrium processes during crystal precipitation, or biological effects, resulting from variations in the composition of the calcifying fluid which are biologically mediated.     

Stable isotope and petrologic evidence for open-system degassing during the climactic and pre-climactic eruptions of Mt. Mazama, Crater Lake, Oregon

Evaluation of the extent of volatile element recycling in convergent margin volcanism requires delineating likely source(s) of magmatic volatiles through stable isotopic characterization of sulfur, hydrogen and oxygen in erupted tephra with appropriate assessment of modification by degassing. The climactic eruption of Mt. Mazama ejected approximately 50 km³ of rhyodacitic magma into the atmosphere and resulted in formation of a 10-km diameter caldera now occupied by Crater Lake, Oregon (lat. 43°N, long. 122°W). Isotopic compositions of whole-rocks, matrix glasses and minerals from Mt. Mazama climactic, pre-climactic and postcaldera tephra were determined to identify the likely source(s) of H₂O and S. Integration of stable isotopic data with petrologic data from melt inclusions has allowed for estimation of pre-eruptive dissolved volatile concentrations and placed constraints on the extent, conditions and style of degassing.Sulfur isotope analyses of climactic rhyodacitic whole rocks yield δ³⁴S values of 2.8-14.8‰ with corresponding matrix glass values of 2.4-13.2‰. δ³⁴S tends to increase with stratigraphic height through climactic eruptive units, consistent with open-system degassing. Dissolved sulfur concentrations in melt inclusions (MIs) from pre-climactic and climactic rhyodacitic pumices varies from 80 to 330 ppm, with highest concentrations in inclusions with 4.8-5.2 wt% H₂O (by FTIR). Up to 50% of the initial S may have been lost through pre-eruptive degassing at depths of 4-5 km. Ion microprobe analyses of pyrrhotite in climactic rhyodacitic tephra and andesitic scoria indicate a range in δ³⁴S from −0.4‰ to 5.8‰ and from −0.1‰ to 3.5‰, respectively. Initial δ³⁴S values of rhyodacitic and andesitic magmas were likely near the mantle value of 0‰. Hydrogen isotope (δD) and total H₂O analyses of rhyodacitic obsidian (and vitrophyre) from the climactic fall deposit yielded values οf −103 to −53‰ and 0.23-1.74 wt%, respectively. Values of δD and wt% H₂O of obsidian decrease towards the top of the fall deposit. Samples with depleted δD, and mantle δ¹⁸O values, have elevated δ³⁴S values consistent with open-system degassing. These results imply that more mantle-derived sulfur is degassed to the Earth’s atmosphere/hydrosphere through convergent margin volcanism than previously attributed. Magmatic degassing can modify initial isotopic compositions of sulfur by >14‰ (to δ³⁴S values of 14‰ or more here) and hydrogen isotopic compositions by 90‰ (to δD values of −127‰ in this case).     

Rossby wave dynamics of the North Pacific extra-tropical response to El Niño: importance of the basic state in coupled GCMs

The extra-tropical response to El Niño in a “low” horizontal resolution coupled climate model, typical of the Intergovernmental Panel on Climate Change fourth assessment report simulations, is shown to have serious systematic errors. A high resolution configuration of the same model has a much improved response that is similar to observations. The errors in the low resolution model are traced to an incorrect representation of the atmospheric teleconnection mechanism that controls the extra-tropical sea surface temperatures (SSTs) during El Niño. This is due to an unrealistic atmospheric mean state, which changes the propagation characteristics of Rossby waves. These erroneous upper tropospheric circulation anomalies then induce erroneous surface circulation features over the North Pacific. The associated surface wind speed and direction errors create erroneous surface flux and upwelling anomalies which finally lead to the incorrect extra-tropical SST response to El Niño in the low resolution model. This highlights the sensitivity of the climate response to a single link in a chain of complex climatic processes. The correct representation of these processes in the high resolution model indicates the importance of horizontal resolution in resolving such processes.     

Oscillations of the intertropical convergence zone and the genesis of easterly waves. Part I: diagnostics and theory

We examine the mean and transient state of the intertropical convergence zone (ITCZ) by analyzing data and using simple theory. We concentrate on the tropical eastern Pacific Ocean noting that there exists in this region a well-developed mean ITCZ. Furthermore, it is a region where there has been considerable discussion in the literature of whether easterly waves develop in situ or propagate westwards from the Atlantic Ocean. The region is typical of tropical regions where there is a strong cross-equatorial pressure gradient (CEPG): mean convection well removed from the equator but located equatorward of the maximum sea-surface temperature (SST) and minimum sea level pressure (MSLP). Further to the west, near the dateline where the CEPG is much smaller, convection is weaker and collocated with SST and MSLP extrema. It is argued that in regions of significant CEPG that the near-equatorial tropical system is inertially unstable and that the rectification of the instability for a given CEPG determines the location and intensity of the climatological ITCZ. Using simple theoretical arguments, we develop an expression for the mean latitude of the ITCZ as a function of the CEPG. We note on a day-by-day basis that the ITCZ is highly transient state with variability occurring on 3–8 day time scales. Transients with amplitudes about half of the mean ITCZ, propagate northwards from the near-equatorial southern hemisphere as anomalous meridional oscillations, eventually amplifying convection in the vicinity of the mean ITCZ. It is argued that in these longitudes of strong CEPG the mean ITCZ is continually inertially unstable with advections of anticylonic vorticity across the equator resulting in the creation of an oscillating divergence–convergence doublet. The low-level convergence produces convection and the resultant vortex tube stretching generates cyclonic vorticity which counteracts the northward advection of anticylonic vorticity. During a cycle, the mid-troposphere heating near 10oN oscillates between 6 and 12 K/day at the inertial frequency of the latitude of the mean convection. As a result, there exists an anomalous and shallower, oscillating meridional circulation with a magnitude about 50% of the mean ITCZ associated with the stable state following the generation of anticylonic vorticity. Further, it is argued that the instabilities of the ITCZ are directly associated with in situ development of easterly waves which occur with the inertial period of the latitude of the mean ITCZ. The dynamical sequences and the genesis of easterly waves are absent in the regions further to the east where the CEPG is much weaker or absent altogether. In a companion study (Part II), numerical experiments are conducted to test the hypothesis raised in the present study.     

Near-surface water fluxes and their controls in a sloping heterogeneously layered volcanic soil beneath a supra-wet tropical montane cloud forest (NW Costa Rica)

Tropical montane cloud forests (TMCF) receive additional (‘occult’) inputs of water from fog and wind-driven rain. Together with the concomitant reduction in evaporative losses, this typically leads to high soil moisture levels (often approaching saturation) that are likely to promote rapid subsurface flow via macropores. Although TMCF make up an estimated 6.6% of all remaining montane tropical forest and occur mostly in steep headwater areas that are protected in the expectation of reduced downstream flooding, TMCF hillslope hydrological functioning has rarely been studied. To better understand the hydrological response of a supra-wet TMCF (net precipitation up to 6535 mm y⁻¹) on heterogeneously layered volcanic ash soils (Andosols), we examined temporal and spatial soil moisture dynamics and their contribution to shallow subsurface runoff and stormflow for a year (1 July 2003–30 June 2004) in a small headwater catchment on the Atlantic (windward) slope near Monteverde, NW Costa Rica. Particular attention was paid to the partitioning of water fluxes into lateral subsurface flow and vertical percolation. The presence of a gravelly layer (C-horizon) at ~25 cm depth of very high hydraulic conductivity (geometric mean: 502 mm h⁻¹) intercalated between two layers of much lower conductivity (7.5 and 15.7 mm h⁻¹ above and below, respectively), controlled both surface infiltration and delayed vertical water movement deeper into the soil profile. Soil water fluxes during rainfall were dominated by rapid lateral flow in the gravelly layer, particularly at high soil moisture levels. In turn, this lateral subsurface flow controlled the magnitude and timing of stormflow from the catchment. Stormflow amount increased rapidly once topsoil moisture content exceeded a threshold value of ~0.58 cm³ cm⁻³. Responses were not affected appreciably by rainfall intensity because soil hydraulic conductivities across the profile largely exceeded prevailing rainfall intensities.     

Turkey Lakes Watershed,Ontario, Canada: 40 years of interdisciplinary whole-ecosystem research

The Turkey Lakes Watershed (TLW) study is a federal, interdepartmental study established in 1979 to investigate the effects of acid rain on terrestrial and aquatic ecosystems. The 10.5 km² watershed, located in the Eastern Temperate Mixed Forest on the Canadian Shield, has been the site of multidisciplinary studies on biogeochemical and ecological processes conducted across plot to catchment scales. The whole-ecosystem investigative approach was adopted from the outset and has allowed research to evolve from its original (and continuing) acidification focus to include investigations on the effects of climate change, forest harvesting and other forest ecosystem perturbations. The extensive scientific and support infrastructure allows for collection of a comprehensive data record essential for understanding long-term environmental trends. Data include atmospheric deposition, meteorology, stream hydrology and chemistry, soil, pore and ground water properties, understory and overstory vegetation, lake and outflow physical and chemical properties, and aquatic macroinvertebrate and fish community composition and abundance. These data have contributed to over 400 published research papers and graduate theses. The watershed has also figured prominently in many continent-wide comparisons advancing fundamental watershed theory. The knowledge gained at TLW has influenced pollutant emission and natural resource management policies provincially, nationally and internationally.     

Contours of saturated and unsaturated overhanging slopes at limiting equilibrium condition

Overhangs are frequently observed in riverbanks, coastal headlands, and rock formations. The geometry of an overhang is an input into most slope stability analyses and is often idealised or back-calculated from empirical data. This study investigates the geometries of overhang slopes, which exist while in limiting conditions satisfying static equilibrium with soil strength governed by the Mohr-Coulomb failure criterion. The overhanging contour is formulated as the unknown in a boundary value problem and solved for using the slip line theory. Analyses consider nonhomogeneous soils, where cohesion and, if unsaturated, the contribution of suction to the effective stress vary linearly with depth. The solutions are presented in general dimensionless charts. Applications of the charts are illustrated via examples. It has been observed that soil with varying amounts of friction and cohesion could develop overhanging arches of different sizes and shapes. This study shows that the curvature of an overhang becomes more pronounced for small values of φ′ . It is also demonstrated that changing the contribution of suction to the effective stress has a direct impact on the size of an unsaturated soil overhang. Overhanging slope shapes observed in reality may be different from the idealised subset studied in this paper since real slopes are not necessarily at impending failure. The real shapes may be influenced by various physical processes such as weathering, stress variations caused by cycles of wetting-drying. Even so, the results presented in the paper indicated how key soil properties influence slope shapes, albeit it while in limiting conditions.     

An improvement to the volcano-scan algorithm for atmospheric correction of CRISM and OMEGA spectral data

The observations of Mars by the CRISM and OMEGA hyperspectral imaging spectrometers require correction for photometric, atmospheric and thermal effects prior to the interpretation of possible mineralogical features in the spectra. Here, we report on a simple, yet non-trivial, adaptation to the commonly-used volcano-scan correction technique for atmospheric CO₂, which allows for the improved detection of minerals with intrinsic absorption bands at wavelengths between 1.9 and 2.1 μm. This volcano-scan technique removes the absorption bands of CO₂ by ensuring that the Lambert albedo is the same at two wavelengths: 1.890 and 2.011 μm, with the first wavelength outside the CO₂ gas bands and the second wavelength deep inside the CO₂ gas bands. Our adaptation to the volcano-scan technique moves the first wavelength from 1.890 μm to be instead within the gas bands at 1.980 μm, and for CRISM data, our adaptation shifts the second wavelength slightly, to 2.007 μm. We also report on our efforts to account for a slight ∼0.001 μm shift in wavelengths due to thermal effects in the CRISM instrument.