Isolation and characterization of 49 polymorphic microsatellite loci for Decapterus maruadsi using SLAF-seq,and cross-amplification to related species

Decapterus maruadsi is a commercially important species in China, but has been heavily exploited in some areas. There is a growing need to develop microsatellites promoting its genetic research for the adequate management of this fishery resources. The recently developed specific-locus amplified fragment sequencing (SLAF-seq) is an efficient and high-resolution method for genome-wide microsatellite markers discovery. In this study, 28 905 microsatellites (mono- to hexa-nucleotide repeats) were identified using SLAF-seq technology, of which di-nucleotide was the most frequent (13 590, 47.02%), followed by mono-nucleotide (8 138, 28.15%), tri-nucleotide (5 727, 19.81%), tetra-nucleotide (1 104, 3.82%), pentanucleotide (234, 0.81%), and hexa-nucleotide (112, 0.39%). One hundred and thirty-two microsatellite loci (di- and tri-nucleotide) were randomly selected for amplification and polymorphism, of which 49 were highly polymorphic and well-resolved. The average number of alleles per locus was 13.63, ranging from 4 to 25, and allele sizes varied between 110 bp and 309 bp. The observed heterozygosity ( H_o ) and expected heterozygosity ( H_e ) ranged from 0.233 to 1.000 and from 0.374 to 0.959, with mean values of 0.738 and 0.836, respectively. The polymorphism information content (PIC) ranged from 0.341 to 0.941 (mean=0.806). However, 12 loci deviated from Hardy-Weinberg equilibrium. Furthermore, transferability tests were also successful in validating the utility of the developed markers in five phylogenetically related species of family Carangidae. A total of 48 microsatellite markers were successfully cross-amplified in Decapterus macarellus, Decapterus macrosoma, Decapterus kurroides, Trachurus japonicus, and Selaroides leptolepis. The present microsatellites provided the first known set of microsatellite DNA markers for D. maruadsi, D. macarellus, D. kurroides, and D. macrosoma, and would be useful for further population genetic and molecular phylogeny studies as well as help with the fisheries management formulation and implementation of the understudied species.

     

基于椭球不确定性的平差模型与算法

测量平差模型中的参数通常存在一些不确定的附加信息或先验信息,充分利用它们可以对部分参数进行约束,从而保证参数解的唯一性和稳定性。本文利用椭球集合描述不确定性,建立了一个新的带有椭球不确定性的平差模型。以两个椭球交集的外接椭球的特征矩阵的迹最小平差准则,分析了不确定度的传播规律,给出了带有椭球不确定性的平差方法。最后,通过算例验证了算法的有效性,说明了平差解与带权混合估计的关系。     

内蒙古鄂尔多斯高原古冰缘遗迹科学考察研究进展

冰缘遗迹(特别是冷生楔形构造及融冻褶皱)是重建古气候及第四纪晚期多年冻土环境的重要证据.内蒙古鄂尔多斯高原是我国北方地区冰缘现象最为发育的地区之一.为准确了解鄂尔多斯高原冰缘遗迹类型及其分布特征、区域冻土演化历史等,中国科学院西北生态环境资源研究院和荷兰自由大学共同组成科研小组,于2018年5—6月组织了"鄂尔多斯高原...     

柴达木盆地东缘祁连圆柏轮宽序列标准化的方法研究

利用在青海柴达木盆地东缘山地获取的大量祁连圆柏树轮资料,对拟合并去除树木生长趋势即标准化方法进行探讨,提出了一种总体曲线方法。该方法用包含完整树木髓心、并且在40~60年间达到生长顶峰的树轮资料拟合柴达木盆地东缘祁连圆柏的总体生长趋势曲线,并用广义的负指数函数来描述树木自茎的次生生长开始以来的径向生长过程。用相同的树轮资料建立估算缺失轮数的最初径向生长模型,其方差解释量高达90.9%。建立年表时包含髓心的样芯认定生理年龄为1年,不包含髓心的样芯用最初径向生长模型估算缺失轮数,然后全部样芯用生长趋势曲线对应部分进行去趋势标准化。该方法对建立可靠、准确的长年表有重要意义,所建年表比用传统负指数函数方法建立的年表保留了更多的低频变化信息。     

利用GPS拖体在万山区域测量平均海面技术研究

Wanshan area has been chosen to be the specified field to calibrate and validate(Cal/Val) the HY-2 altimeter and its follow-on satellites. In March 2018, an experiment has been conducted to determine the sea surface height(SSH) under the HY-2 A ground track(Pass No. 203). A GPS towing-body(GPS-TB) was designed to measure the SSH covering an area of about 6 km×28 km wide centered on the HY-2 A altimeter satellite ground track. Three GPS reference stations, one tide gauge and a GPS buoy were placed in the research area, in order to process and resolve the kinematic solution and check the precision of the GPS-TB respectively. All the GPS data were calculated by the GAMIT/GLOBK software and TRACK module. The sea surface was determined by the GPS-TB solution and the tide gauge placed on Zhiwan Island. Then the sea surface of this area was interpolated by Arc GIS10.2 with ordinary Kriging method. The results showed that the precision of the GPS-TB is about 1.10 cm compared with the tide gauge placed nearby, which has an equivalent precision with the GPS buoy. The interpolated sea surface has a bias of –1.5–4.0 cm with standard deviation of 0.2–2.4 cm compared with the checking line. The gradient of the measured sea surface is about 1.62 cm/km along the HY-2 orbit which shows a good agreement compared with the CLS11 mean sea surface(MSS). In the Cal/Val of satellites, the sea surface between the tide gauge/GPS buoy and the footprint of altimeter can be improved by this work.     

Population,urbanization and economic scenarios over the Belt and Road region under the Shared Socioeconomic Pathways

The countries throughout the Belt and Road region account for more than 60% of the world's population and half of the global economy. Future changes in this area will have significant influences on the global economic growth, industrial structure and resource allocation. In this study, the proportion of the urban population to the total population and the gross domestic product were used to represent the levels of urbanization and economic development, respectively. The population, urbanization and economic levels of the Belt and Road countries for 2020–2050 were projected under the framework of the IPCC's shared socioeconomic pathways(SSPs), and the following conclusions are drawn.(1) The population, urbanization and economic levels in the Belt and Road region will likely increase under all five pathways. The population will increase by 2%–8%/10 a during 2020–2050 and reach 5.0–6.0 billion in 2050. Meanwhile, the urbanization rate will increase by 1.4%–7.5%/10 a and reach 49%–75%. The GDP will increase by 17%–34%/10 a and reach 134–243 trillion USD.(2) Large differences will appear under different scenarios. The SSP1 and SSP5 pathways demonstrate relatively high urbanization and economic levels, but the population size is comparatively smaller; SSP3 shows the opposite trend. Meanwhile, the economy develops slowly under SSP4, but it has a relatively high urbanization level, while SSP2 exhibits an intermediate trend.(3) In 2050, the population will increase relative to 2016 in most countries, and population size in the fastest growing country in Central Asia and the Middle East countries will be more than double. Urbanization will develop rapidly in South Asia, West Asia and Central Asia, and will increase by more than 150% in the fastest growing countries. The economy will grow fastest in South Asia, Southeast Asia and West Asia, and increase by more than 10 times in some counties with rapid economic development.     

Authigenic iron oxide formation in the estuarine mixing zone of the Yangtze River

Estuaries are elementary geochemical fronts where river water and seawater mix. Within this mixing zone, iron and other non-conservative elements can undergo complex reactions to form new solid phases. In order to understand authigenic iron oxide formation in the Yangtze River Estuary, two onsite water-mixing sets of experiments were conducted, one by mixing variable amounts of unfiltered Yangtze River water with filtered East China Sea water of different salinity (set 1), the other by mixing variable amounts of filtered Yangtze River water with filtered East China Sea water of different salinity (set 2). In set 2, the minerals newly formed in the course of mixing were investigated by means of a scanning electron microscope fitted with an energy-dispersive X-ray analytical system. It was found that ferrihydrite and lepidocrocite were formed in these mixing experiments, coexisting in nearly equal amounts. These iron oxides appear as aggregated particles with a large grain-size range of several microns to more than 100 μm. The electrolytic properties of seawater played an important role in the formation of these authigenic iron oxides. Kaolinite and organic aggregates were also found in the experimentally mixed pre-filtered waters. Amounts of newly formed suspended matter (set 2) were one to three orders of magnitude lower than those of total suspended matter (TSM) (set 1). This implies that newly formed minerals represent only a very small proportion of TSM in the estuarine mixing zone of the Yangtze River.     

2009年冬、夏季南海北部超微型浮游生物的分布特征及其环境相关分析

2009年2月(冬季)和8月(夏季)在南海北部海域(nSCS)采用流式细胞术对聚球藻、原绿球藻、超微型光合真核生物3类超微型光合浮游生物和异养浮游细菌的丰度和碳生物量的时空分布特征进行了研究,并分析了其与环境因子之间的关系。结果表明,夏季聚球藻和原绿球藻的平均丰度高于冬季,超微型光合真核生物和异养浮游细菌的丰度反之,为冬季高于夏季。聚球藻、超微型光合真核生物和异养浮游细菌在富营养的近岸陆架海域丰度较高,而原绿球藻高丰度则出现在陆坡开阔海域。在垂直分布上,聚球藻主要分布在跃层以上,跃层以下丰度迅速降低;原绿球藻高丰度主要出现在真光层底部;超微型光合真核生物在水层中的高值同样出现在真光层底部,且与Pico级份叶绿素a浓度分布一致;异养浮游细菌在水体中的分布与聚球藻类似。这些分布格局的差异,取决于环境条件的变化和4类超微型浮游生物生态生理适应性的差异。在超微型光合浮游生物群落中,各类群碳生物量的贡献因季节和海域类型的不同而发生变化:聚球藻在夏季近岸陆架区占超微型光合浮游生物总碳生物量的41%,原绿球藻在陆坡开阔海成为主要贡献者(50%),超微型光合真核生物碳生物量以冬季为高(在近岸陆架区占比68%)。冬、夏季异养浮游细菌碳生物量均高于超微型光合浮游生物碳生物量。     

Pore-water geochemistry in methane-seep sediments of the Makran accretionary wedge off Pakistan: Possible link to subsurface methane hydrate

Cold seeps are pervasive along the continental margin worldwide,and are recognized as hotspots for elemental cycling pathway on Earth.In this study,analyses of pore water geochemical compositions of one-400 cm piston core(S3) and the application of a mass balance model are conducted to assess methane-associated biogeochemical reactions and uncover the relationship of methane in shallow sediment with gas hydrate reservoir at the Makran accretionary wedge off Pakistan.The results revealed that approximately 77% of sulfate is consumed by the predominant biogeochemical process of anaerobic oxidation of methane.However,the estimated sulfate-methane interface depth is-400 cm below sea floor with the methane diffusive flux of 0.039 mol/(m~2·a),suggesting the activity of methane seepage.Based on the δ~(13)C_(DIC) mass balance model combined with the contribution proportion of different dissolved inorganic carbon sources,this study calculated the δ~(13)C of the exogenous methane to be-57.9‰,indicating that the exogenous methane may be a mixture source,including thermogenic and biogenic methane.The study of pore water geochemistry at Makran accretionary wedge off Pakistan may have considerable implications for understanding the specific details on the dynamics of methane in cold seeps and provide important evidence for the potential occurrence of subsurface gas hydrate in this area.     

p-y曲线对成层土体中大直径单桩的适用性研究

API规范推荐的p-y曲线是由均质土体得到的,并未考虑土层间相互作用,Georgiadis基于柔性桩提出了等效深度法修正p-y曲线,把均质土p-y曲线延伸到了成层土体中。为了研究p-y曲线和等效深度法对于大直径单桩在成层土体中的适用性,取4种典型地质条件:成层砂土、砂土-黏土-砂土、成层黏土和黏土-砂土-黏土,通过L-PILE软件计算了6 m直径单桩基础的p-y曲线、桩顶水平荷载-位移曲线、桩身位移和弯矩。并与ABAQUS建立的单桩基础三维有限元模型计算结果进行比较。结果表明等效深度法对于成层砂土影响不大;对于成层黏土影响较大;对于中间为软弱土层的成层土体,在荷载较大时影响显著,等效深度法计算结果更加接近FEM结果。在成层土体中,p-y曲线应用于大直径单桩对于砂土高估了初始刚度,低估了极限抗力;对于黏土则低估了初始刚度和极限抗力。