Morphology and molecular characterization of the epiphytic dinoflagellate Prorocentrum cf. rhathymum in temperate waters off Jeju Island, Korea

Prorocentrum spp. are planktonic and/or benthic species. Benthic Prorocentrum species are of primary concern to scientists and the public because some of them are toxic. We established clonal cultures of 3 strains of Prorocentrum species that were collected from the thalli of a macroalga in the coastal waters off Jeju Island, located at the southern end of Korea. The Korean strains of P. cf. rhathymum, which are morphologically almost identical to the Virgin Island strain of P. rhathymum, were different from P. mexicanum because the former dinoflagellate has one simple collar-like spine in the periflagellar area, while the latter dinoflagellate has a 2- or 3-horned spine. In addition, the sequences of the small subunit (SSU) rDNA of the Korean strains were identical to those of the Malaysian and Floridian strains of P. rhathymum, while the sequences of the large subunit (LSU) rDNA of the Korean strains were 0.1–0.9% different from those of the Iranian and Malaysian strains of P. rhathymum. In phylogenetic trees based on the SSU rDNA sequences, the Korean strains of P. rhathymum formed a clade with the Malaysian and Floridian strains of P. rhathymum and the Vietnamese and Polynesian strains of P. mexicanum. However, in phylogenetic trees based on the LSU rDNA sequences, the Korean strains of P. rhathymum formed a clade with the Iranian strain of P. rhathymum and the Spanish and Mexican strains of P. mexicanum. Therefore, the molecular characterization of the Korean strains does not allow us to clearly classify them as P. rhathymum, nor P. mexicanum, although their morphology has so far been reported to be closer to that of P. rhathymum than P. mexicanum and thus we designated them as P. cf. rhathymum.     

Comparative analysis of four stem taper models for Quercus glauca in Mount Halla,Jeju Island,South Korea

This study was conducted to fit the diameter-height data of Quercusglaucain Jeju Island, South Korea to the four commonly used stem taper equations andto evaluate the performance of the four stem taper models using four statistical criteria： Fit index （FI）, root mean square error （RMSE）, bias （）,and absolute mean difference （AMD）. Results showed that the Kozak02stem taper equation provided the best FI（0.9847）, RMSE（1.5745）,（-0.0030 cm） and AMD （1.0990 cm） whileMax and Burkhart model had the poorest performance among the four stem taper models based on the four evaluation statistics （FI ： 0.9793,RMSE ： 1.8272, ： 0.3040 cm and AMD ： 1.3060 cm）. These stem taper equations can serve as a useful tool for forest managers in estimating the diameter outside bark at any given height, merchantable stem volumes and total stem volumesof the standing trees of Quercusglaucain theGotjawal forests located in Mount Halla, Jeju Island, South Korea.     

Comparison of gravity current mixing parameterizations and calibration using a high-resolution 3D nonhydrostatic spectral element model

In light of the pressing need for development and testing of reliable parameterizations of gravity current entrainment in ocean general circulation models, two existing entrainment parameterization schemes, K-profile parameterization (KPP) and one based on Turner’s work (TP), are compared using idealized experiments of dense water flow over a constant-slope wedge using the HYbrid Coordinate Ocean Model (HYCOM). It is found that the gravity current entrainment resulting from KPP and TP differ significantly from one another. Parameters of KPP and TP are then calibrated using results from the high-order nonhydrostatic spectral element model Nek5000. It is shown that a very good agreement can be reached between the HYCOM simulations with KPP and TP, even though these schemes are quite different from each other.     

Molecular phylogeny of the genus <Emphasis Type="Italic">Chondracanthus</Emphasis> (Rhodophyta), focusing on the resurrection of <Emphasis Type="Italic">C. okamurae</Emphasis> and the description of <Emphasis Type="Italic">C. cincinnus</Emphasis> sp. nov.

Determining the taxonomic status of the red algal genus Chondracanthus based on morphological characters is challenging due to the similarity and high degree of plasticity of the thallus. Since the taxonomic history of several Chondracanthus species remains unclear, we analyzed the plastid rbcL and mitochondrial COI genes of the specimens from Korea and Japan, in combination with morphological observations, to examine their phylogenetic relationships. Our results confirmed the distinction of C. okamurae, which is separated from C. intermedius, and identified a novel species, C. cincinnus sp. nov. Three species (C. okamurae, C. intermedius and C. cincinnus) formed a monophyletic clade with C. tenellus. C. okamurae is distinguished by linear, narrow, cylindrical to compressed, slightly recurved axes, and a high-intertidal to subtidal distribution. It was collected from Korea and Japan, while C. intermedius was identified from Japan only. A new species, Chondracanthus cincinnus sp. nov., is characterized by linear, compressed, strongly recurved axes, and a low-intertidal to subtidal distiribution. Based on the molecular phylogeny using rbcL and COI data, we herein resurrect C. okamurae as a distinct species and identify C. cincinnus as a new species.     

Age determination and growth rate of <Emphasis Type="Italic">Mactra chinensis</Emphasis> (Bivalvia: Mactridae) by external rings and chondrophore growth bands

Age, growth and mortality of Mactra chinensis were investigated during the period from October 2012 to September 2013 in Busan, South Korea. The monthly variation of the marginal index (MI) of the shell and chondrophore showed that the ring of this species was formed once a year during July. We estimated the age of M. chinensis by reading the external rings on the shell and the growth bands of the chondrophore to compare growth parameters between the two growth characters. The age of this species ranged from 0 to 8 years (shell-based age reading) and from 0 to 10 years (chondrophore-based age reading). Based on external rings and growth bands of chondrophore for the same period, the von Bertalanffy growth functions were expressed by the equation, L _t = 101.53[1-exp {-0.15(t + 0.75)}] and L _t = 90.03[1-exp {-0.20(t + 0.50)}], respectively. The likelihood test showed that there was a significant difference in L _∞ (P < 0.001), K (P < 0.001), to (P < 0.001) estimated from non-linear regression between the two growth characters.     

Implication of salt marsh foraminiferal assemblages in Suncheon Bay,South Korea

Analyses of the compositions of benthic foraminifera and sediment, observations of tidal level and salinity, and a geographic survey of the tidal salt marsh in Suncheon Bay were conducted to examine the vertical distribution of foraminifera and evaluate their potential use for sea level studies. The salt marsh is composed mainly of fine-grained silty clay sediment and its salinity is below approximately 11 psu. The tidal current flows in the southwest-tonortheast direction with an average velocity of 26.57 cm/s. A total of 33 species of foraminifera (17 agglutinated and 16 calcareoushyaline) belonging to 24 genera was identified. The species diversity (1.1 on average) was relatively low. Dominant species were Ammonia beccarii, Miliammina fusca, Haplophragmoides wilberti, and Jadammina macrescens. Calcareous foraminifera (29.5%) were dominantly represented by the Ammonia beccarii assemblage, which characterized the region between mean tide level and mean low high water (MLHW). Agglutinated species (70.5%) were represented mostly by Miliammina fusca, Miliammina fusca-Haplophragmoides wilberti, and Haplophragmoides wilberti assemblages, which characterized the MLHW–mean high water (MHW), MHW–mean highest high water (MHHW), and MHHW–Approx. highest high water tide levels, respectively. In particular, the Haplophragmoides wilberti assemblage is believed to represent the highest elevation zone of foraminifera in the salt marshes of Suncheon Bay and is considered to be a reliable indicator of sea level as a result of its narrow vertical range.     

Release characteristics of molasses from a well-type barrier system in groundwater: a large test tank study for nitrate removal

A pilot-scale study was conducted to characterize the performance of molasses' release from a well-type barrier system harboring solidifying molasses named slowly released molasses (SRM) as a reactive medium to promote indigenous denitrifying activity. A SRM rod was made by mixing molasses with paraffin wax, cellulose, and silica sands in a cylindrical mold. Two SRM systems harboring 30 and 60 SRM rods, referred to as Systems A and B, respectively, were constructed in a large flow tank (L × W × D = 8 m × 4 m × 2 m) filled with natural sands. These two systems continuously delivered molasses with groundwater flow over 96 days, with decreasing molasses' concentrations ranging from 763 to 95 and 1,150 to 183 mg L^?1 as chemical oxygen demand values (COD) for Systems A and B, respectively. From simulation results with an aid of the upscaled mass transfer function (MTF) model, the molasses' mass flux was slowly decreased with time, exhibiting 57, 11, and 3 mg COD day^?1 in 10, 100, and 365 days in System A, and 138, 25, and 6 mg COD day^?1 in System B, respectively; 90, 70, and 50 % of total molasses' mass remained after 12, 63, and 267 days in System A and 12, 65, and 291 days in System B, respectively. This study demonstrates that SRM system can provide a remedial alternative for long-term in situ treatment of nitrate-contaminated groundwater.     

A cyberGIS approach to exploring neighborhood-level social vulnerability for disaster risk management

Timely identification of disaster-prone neighborhoods and examination of disparity in disaster exposure are critical for policymakers to plan efficient disaster management strategies. Many studies have investigated racial, ethnic, and geographic disparities and populations most vulnerable to disasters. However, little attention has been paid to the development of easily accessible and reusable tools to enable: (1) the prompt identification of vulnerable neighborhoods; and (2) the examination of social disparity in disaster impact. In this research, we have developed a visual analytics tool that allows users to: (1) delineate neighborhoods based on their selection of variables; and (2) explore which neighborhoods are susceptible to the impacts of disasters based on specific socioeconomic and demographic characteristics. Through an exploration of COVID-19 data in the case study, we revealed that the tool can provide new insights into the identification of vulnerable neighborhoods that need immediate attention for disaster control, management, and relief.     

A simple method of correction for profile-length water-column height variations in high-resolution,shallow-water seismic data

In high-resolution, shallow-water seismic surveys, correction for water-column height variations caused by tides, weather, and currents is an important part of data processing. In this study, we present a very simple method of correction for profile-length (i.e., long-wavelength) water-column height variations for high-resolution seismic data using a reference bathymetric grid. First, the difference between the depth of the seafloor picked from seismic data and the bathymetry from the bathymetric grid is computed at the locations where the shot points of seismic profiles and the bathymetric grid points are collocated or closest. Then, the results are gridded and smoothed to obtain the profile-length water-column height variations for the survey area. Next, the water-column height variations for each seismic profile are extracted from the smoothed grid and converted to two-way traveltimes. The corrections for the remaining mis-ties at the intersections, computed within a circular region around each tie shot point, are added to the corrections for the water-column height variations. The final, mistie corrected water-column height corrections are loaded to the SEGY trace header of seismic data as a total static. We applied this method to the sparker data acquired from the shallow-water area off the western-central part of Korea where the tidal range is over 7 m. The corrections for water-column height variations range from -10 to 4 m with a median value of about -2 m. Large corrections occur locally between and near the islands probably due to the amplification and shortening in tidal wavelength caused by rapid shoaling toward the islands.     

A research on the estimation of coefficient roughness in open channel applying entropy concept

Manning’s roughness coefficient is one of the most important parameters in establishing the plan, design, operation, and maintenance of the water resource projects for hydraulic engineers, and since the worth of this value has a significant effect on the analysis of the water level and flow rate distribution, it is very important to carry out the calculation of flood stage, design of the stream/river structure, and safety assessment of the stream. Due to the importance of these factors, the calculation of objective and quantitative roughness coefficient has long drawn attention from researchers at home and abroad. Many studies have been conducted to estimate the roughness coefficient based on the actual measurements for various types of streams, such as gravel and sand streams, and many others have produced experience equation for various levels of materials and relative depth. Despite many of these efforts, the roughness coefficient uses constant values when applied to the actual model or real design. This application is a major source of error in simulating flood and unsteady flow. To solve these problems, good results were obtained by attempting to calculate the roughness coefficient applied with the entropy concept in open-channel flow. In particular, the proposed roughness coefficient based on the measurements taken from laboratories under conditions showed very similar to the actual stream flow which was found to be about the same as the value from the unsteady flow. Accordingly, the newly developed roughness coefficient equation, which is the result of this study, is a very practical one formula that can be applied to the flood flow of real natural streams. It can also be used as an alternative to make up for the disadvantages of the Manning’s roughness coefficient.