Spatial distribution, diversity and composition of bacterial communities in sub-seafloor fluids at a deep-sea hydrothermal field of the Suiyo Seamount

Spatial distribution, diversity, and composition of bacterial communities within the shallow sub-seafloor at the deep-sea hydrothermal field of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific Ocean, were investigated. Fluids were sampled from four boreholes in this area. Each borehole was located near or away from active vents, the distance ranging 2–40 m from active vents. In addition, fluids discharging from a natural vent and ambient seawater were sampled in this area. We extracted DNA from each sample, amplified bacterial 16S rRNA genes by PCR, cloned the PCR products and sequenced. The total number of clones analyzed was 348. Most of the detected phylotypes were affiliated with the phylum Proteobacteria, of which the detection frequency in each clone library ranged from 84.6% to 100%. The bacterial community diversity and composition were different between hydrothermal fluids and seawater, between fluids from the boreholes and the vent, and even among fluids from each borehole. The relative abundances of the phylotypes related to Thiomicrospira, Methylobacterium and Sphingomonas were significantly different among fluids from each borehole. The phylotypes related to Thiomicrospira and Alcanivorax were detected in all of the boreholes and vent samples. Our findings provide insights into bacterial communities in the shallow sub-seafloor environments at active deep-sea hydrothermal vent fields.     

Clinopyroxene-perovskite phase transition of FeGeO3 under high pressure and room temperature

In order to confirm the possible existence of FeGeO₃ perovskite, we have performed in situ X-ray diffraction measurements of FeGeO₃ clinopyroxene at pressures up to 40 GPa at room temperature. The transition of FeGeO₃ clinopyroxene into orthorhombic perovskite is observed at about 33GPa. The cell parameters of FeGeO₃ perovskite are a=4.93(2) Å, b=5.06(6) Å, c=6.66(3) Å and V=166(3) ų at 40 GPa. On release of pressure, the perovskite phase transformed into lithium niobate structure. The previously reported decomposition process of clino-pyroxene into Fe₂GeO₄ (spinel)+GeO₂ (rutile) or FeO (wüstite) +GeO₂ (rutile) was not observed. This shows that the transition of pyroxene to perovskite is kinetically accessible compared to the decomposition processes under low-temperature pressurization.     

Rare Earth Elements as an Indicator to Origins of Skarn Deposits: Examples of the Kamioka Zn-Pb and Yoshiwara-Sannotake Cu(–Fe) Deposits in Japan

Abstract: Systematic data of rare earth elements (REEs) are presented in order to put some constraints on the origin of hydrothermal fluids responsible for two contrastive skarn deposits in Japan; the Kamioka Zn-Pb and Yoshiwara-Sannotake Cu(-Fe) deposits. Carbon and oxygen isotopic studies have demonstrated that the hydrothermal fluids responsible for the Kamioka Zn-Pb deposits are of meteoric water origin whereas those for the Yoshiwara-Sannotake Cu(-Fe) deposits are of magmatic water origin. The REE abundances of epidote skarn derived from aluminous rocks, garnet and clinopyroxene in calcic exoskarn derived from limestone, and interstitial calcite associated with sulfide minerals were determined for these contrastive skarn deposits by inductively-coupled plasma mass spectrometry (ICP-MS). A significant difference in the REE concentrations is not found between epidote skarn and aluminous original rock (plagioclase-clinopyroxene rock, called Inishi rock) from the Kamioka Zn-Pb deposits, indicating that the REEs are generally immobile during the formation of epidote skarn, and that the REE concentrations of the hydrothermal fluid are considerably low relative to the aluminous original rock. In contrast, the epidote skarn exhibits enrichment of Eu with increasing total REE concentrations relative to the aluminous original rock (quartz diorite) in the Yoshiwara-Sannotake Cu(-Fe) deposits, implying a contribution of magmatic fluid derived from granitoids during the skarn formation. Limestone generally has much lower REE concentrations related to surrounding aluminous rocks, and thus the REE concentrations of garnet and clinopyroxene in calcic exoskarn, originated from limestone, are variable due to the interaction with the hydrothermal fluids. The chondrite-normalized REE patterns of garnet, clinopyroxene, and interstitial calcite exactly provide useful information on origins of hydrothermal fluids. The REE patterns of these minerals from the Kamioka Zn-Pb deposits show lower (Pr/Yb)cn ratios, and negative Ce and Eu anomalies inherited from limestone with the decrease of This suggests that the hydrothermal fluids responsible for the Kamioka Zn-Pb deposits were depleted in REEs, and were not magmatic water in origin, but presumably meteoric one. In striking contrast, the REE patterns of exoskarn minerals and calcite from the Yoshiwara-Sannotake Cu(-Fe) deposits exhibit a positive Eu anomaly, and high (Pr/Yb)cn ratios with the considerable increase of σREE and the disappearance of negative Ce anomaly, implying that the fluids were dominantly of magmatic origin. The REE indices are very likely to be an excellent indicator to origins of the skarn deposits.     

A GPU based real-time GPS software receiver

Off-the-shelf graphics processing units provide low-cost massive parallel computing performance, which can be utilized for the implementation of a GPS software receiver. In order to realize a real-time capable system the crucial stages of the receiver should be optimized to suit the requirements of a parallel processor. Moreover, the receiver should be capable to provide wider correlation functions and provide easy access to the spectral domain of the signals. Thus, the most suitable correlation algorithm, which forms the core part of each receivers should be chosen and implemented on the graphics processor. Since the sampling rate of the received signal limits the real-time capabilities of the software radio it is necessary to determine an optimum value, considering that the precision of the observable varies with sampling bandwidth. We are going to discuss details and present our single frequency multi-channel implementation, which is capable of operating in real-time mode. Our implementation differs from other solutions by the wideness of the correlation function and allows simple handling of data in the spectral domain. Comparison with output from a commercial hardware receiver, which shares the antenna with the software radio, confirms the consistency and accuracy of our development.     

Identification of the fronts from the Kuroshio Extension to the Subarctic Current using absolute dynamic topographies in satellite altimetry products

The climatologies and variabilities of the fronts associated with the Kuroshio Extension (KE), the Kuroshio Extension Northern Branch (KENB), the flow along the Subarctic Boundary (SAB), and the Subarctic Current (SAC) are identified by a new method based on the absolute dynamic height product from the archiving, validation, and interpretation of satellite oceanographic data (the AVISO product). The fronts are detected by examining the specific contour values of the absolute dynamic topography (ADT) in the AVISO product. The (time-varying) specific contour values are decided from the local maxima of the averaged surface geostrophic velocity along the ADT. Assuming the specific contours as the front locations, we obtain an occurrence frequency map of the four front locations, and determine the monthly variability of the fronts over the 1993–2015 period. The results are validated by hydrographic observations. The KE and KENB east of the Shatsky Rise migrate southward several times at a speed of ~ 0.2 cm s^?1, while the SAB and SAC are mostly stationary.     

Additional flux arising from unresolved scales in eddying ocean models

An analysis is presented of snapshot data (eastward and northward velocity components: u and v; tracer such as potential temperature: τ) from an eddy-resolving (Rgrid: 1/12°) ocean model experiment, in order to explore a method for improving eddy-permitting model performance. Horizontal 3 × 3 R-grid averages give the eddy-permitting grid (P-grid: 1/4°) variables: 〈u〉, 〈v〉, and 〈τ〉, where 〈〉 denotes the spatial P-grid scale average. The difference between the horizontal tracer flux across the boundary face of a P-grid and that across the corresponding faces of R-grids is estimated as F_2E. It is found that the correlations among the gradients of u, v, and τ give a good approximation F_2C to the estimated flux F_2E. The approximated flux is a function of these gradients and the grid size. A method is presented for implementing the F_2C for density to an eddying ocean model as an additional advection. Practical experiments were conducted with a realistic configuration. It is shown that the zonal mean isotherms in the Kuroshio extension region are more flattened in the run using the proposed method than in another run using the conventional horizontal biharmonic operator, suggesting that the additional flux correction leads to an enhancement of sub-basin scale mixing.     

Development of a new operational system for monitoring and forecasting coastal and open-ocean states around Japan

We developed a new system to monitor and forecast coastal and open-ocean states around Japan for operational use by the Japan Meteorological Agency. The system consists of an eddy-resolving analysis model based on four-dimensional variational assimilation and a high (2-km) resolution forecast model covering Japanese coastal areas that incorporates an initialization scheme with temporal and spatial filtering. Assimilation and forecast experiments were performed for 2008 to 2017, and the results were validated against various observation datasets. The assimilation results captured well the observed variability in sea surface temperature, coastal sea level, volume transport, and sea ice. Furthermore, the volume budget for the Japan Sea was significantly improved by the use of the 2-km resolution forecast model compared with the 10-km resolution analysis model. The forecast results indicate that this system has a predictive limit longer than 1 month in many areas, including in the Kuroshio current area south of Japan and the southern Japan Sea. In the forecast results of case studies, the 2017 Kuroshio large meander was well predicted, and warm water intrusions accompanying Kuroshio path variations south of Japan were also successfully reproduced. Sea ice forecasts for the Sea of Okhotsk largely captured the evolution of sea ice in late winter, but sea ice in early winter included relatively large errors. This system has high potential to meet operational requirements for monitoring and forecasting ocean phenomena at both meso- and coastal scales.

     

Mineralogy and geochemistry of shallow sediments of Sonargaon, Bangladesh and implications for arsenic dynamics: Focusing on the role of organic matter

Mineralogy and geochemistry of modern shallow sediments (up to 5 m thick) within the zone of water table fluctuations were studied to determine the likely sources and processes responsible for releasing As into groundwater. Samples were collected from different geological settings with varying groundwater As concentrations during dry (December 2005) and wet (September 2006) seasons at Sonargaon, Bangladesh. Stratigraphic sequences of the studied sediments showed three distinct lithofacies, viz. clayey-silt, silty-clay, and silty-very fine sand, corresponding to fine-grained overbank associations. Total As concentrations of shallow sediments ranged from <1 to 16 mg/kg without a significant difference in the range of As concentrations between the seasons. Sequential chemical extraction analysis of As revealed that >80% of the As was fixed in insoluble and organic phases, while the amount of As in reducible and acid-soluble phases was very low (<20%) and varied inversely with total As content. Total As concentration varied with mica content (muscovite and biotite) and its related elements (Al, Mg and Fe), but not with total organic C, suggesting that biotite is the major host phase of As. Arsenic appears to be liberated from biotite and/or other As-bearing minerals via chemical weathering (i.e., hydration-decomposition), either from the near-surface sediments which are subject to seasonal cycling of the redox conditions, or from within the aquifer sediments. Once released, progressive diagenesis to form As-bearing organic matter may be responsible for controlling As distribution in the sediments and coexisting groundwater of the study area.     

Strong ground motion simulation during the November 1759 Earthquake along Serghaya Fault in the metropolitan of Damascus, Syria

The seismic hazard potential for metropolitan of Damascus, Syria is mainly controlled by earthquakes along Serghaya Fault which is a branch of Dead Sea Fault System. In this study, strong ground motion due to the November 1759 Earthquake along the fault of Serghaya was estimated with a numerical simulation technique. In the simulation, the Kostrov-like slip-velocity function was used as an input to the discrete wave number method to simulate the strong ground motions in a broadband frequency range. In order to model the incoherent rupture propagation which can excite large high-frequency waves, random numbers are added to arrival time of circular rupture front. MMI intensities calculated from the synthetic ground motions are compared with the observed values by Ambraseys and Barazangi (J Geophys Res 94:4007-4013, 1989). The calculated intensities are in good agreement with the observed ones at the most sites that validate appropriateness of the proposed source model. The PGA and PGV in the eastern region of Damascus city are higher than those in the western region due to the effects of local site amplification. The simulated high-frequency (1.0–6.0 Hz) ground motions for the sites in the Damascus city are higher than the design requirements defined by the Syrian building code. Furthermore, the simulated high-frequency ground motions for sites in the focal region are bigger than the design requirements in the case of the near-fault factors and are not considered. That demonstrates the appropriateness of considering the near-fault factors for a site near the focal region as introduced by the new building code.     

Carbon isotopic composition of acetic acid generated by hydrous pyrolysis of macromolecular organic matter from the Murchison meteorite

Abstract— Low molecular weight monocarboxylic acids, including acetic acid, are some of the most abundant organic compounds in carbonaceous chondrites. So far, the ¹³C‐ and D‐enriched signature of water‐extractable carboxylic acids has implied an interstellar contribution to their origin. However, it also has been proposed that monocarboxylic acids could be formed by aqueous reaction on the meteorite parent body. In this study, we conducted hydrous pyrolysis of macromolecular organic matter purified from the Murchison meteorite (CM2) to examine the generation of monocarboxylic acids with their stable carbon isotope measurement. During hydrous pyrolysis of macromolecular organic matter at 270–330 °C, monocarboxylic acids with carbon numbers ranging from 2 (C₂) to 5 (C₅) were detected, acetic acid (CH₃COOH; C₂) being the most abundant. The concentration of the generated acetic acid increased with increasing reaction temperature; up to 0.48 mmol acetic acid/g macromolecular organic matter at 330 °C. This result indicates that the Murchison macromolecule has a potential to generate at least ?0.4 mg acetic acid/g meteorite, which is about four times higher than the amount of water‐extractable acetic acid reported from Murchison. The carbon isotopic composition of acetic acid generated by hydrous pyrolysis of macromolecular organic matter is ?‐27‰ (versus PDB), which is much more depleted in ¹³C than the water‐extractable acetic acid reported from Murchison. Intramolecular carbon isotope distribution shows that methyl (CH₃‐)‐C is more enriched in ¹³C relative to carboxyl (‐COOH)‐C, indicating a kinetic process for this formation. Although the experimental condition of this study (i.e., 270–330 °C for 72 h) may not simulate a reaction condition on parent bodies of carbonaceous chondrite, it may be possible to generate monocarboxylic acids at lower temperatures for a longer period of time.