A high-resolution geophysical investigation of sediment distribution controlled by catchment size and tides in a multi-basin turbid outwash fjord: Simpson Bay,Prince William Sound,Alaska

Surficial sediment distribution within Simpson Bay is a function of antecedent bedrock and recently deposited glacial geology, as well as active physical processes both within Simpson Bay and Prince William Sound (PWS). Simpson Bay is a turbid, outwash fjord located in northeastern PWS, Alaska. Freshwater from heavy precipitation, and the melting of high alpine glaciers enter the bay through bay head rivers and small shoreline creeks. The catchment has a high watershed/basin surface area ratio (∼8:1), and easily erodible bedrock that contribute to high sediment loads. The system can be divided into three discrete basins, each with specific morphologic and circulatory characters. Side scan sonar, swath bathymetry, and seismic profiles reveal that bathymetric highs are areas of outcropping glacial surfaces. High backscatter coupled with surface grab samples reveal these surfaces to be composed of coarse sediment and bedrock outcrops. Bathymetric lows are areas of low backscatter, and grab samples reveal these areas to be ponded deposits of organic-rich estuarine muds. The data provide evidence of terminal morainal bank systems, and glacial grounding line deposits at the mouth of the bay and rocky outcrops were identified as subsurface extensions of aerial rocky promontories. Radioisotope analyses of short cores reveal that the bay has an average accumulation rate of approx. 0.5 cm year⁻¹, but that this varies in function of the watershed/basin surface area ratios of the different basins. The interaction of tidal currents and sediment source drives sediment distribution in Simpson Bay. Hydrographic data reveal high spatial variability in surface and bottom currents throughout the bay. Subsurface currents are tide dominated, but generally weak (5–20 cm s⁻¹), while faster currents are found along shorelines, outcrops, and bathymetric highs. Bathymetric data reveal steep slopes with little to no modern sediment throughout the bay, suggesting lack of deposition due to tidal currents.     

A common garden experiment with larval Northeast Arctic and Norwegian coastal cod cohorts in replicated mesocosms

A replicated mesocosm experiment was carried out to evaluate differential effects of feeding conditions for larval Northeast Arctic (NA) cod and Norwegian coastal (NC) cod. The two populations were (1) reared together with a 6-day older NA cohort (mixed) in high (HC) and low prey concentration (LC; 2000 and 200 prey/L initially), and (2) reared separately in HC treatments (non-mixed) to be able to evaluate both the effect of feeding conditions and possible effects of size interaction within mesocosms. The larvae were fed natural zooplankton, and the two stocks were identified in the mixed mesocosms by otolith marking. NA larvae hatched at a larger size, had higher growth rates, and survived better than NC larvae in both mixed and non-mixed mesocosms in the HC treatment. The second cohort clearly survived better in the non-mixed than in the mixed mesocosms, indicating the presence of an interaction effect before cannibalism could occur. We found a significant higher weight-at-length between NC and NA larvae (<12 mm), which was bigger than the effect difference due to feeding conditions. Furthermore, a positive relation between survival and initial growth within mesocosms was found. We suggest that lower growth at early larval stages was accompanied by lower survival, and suggest that this was further enhanced when larvae interacted with older and larger larvae.     

The AquaDEB project (phase I): Analysing the physiological flexibility of aquatic species and connecting physiological diversity to ecological and evolutionary processes by using Dynamic Energy Budgets

The European Research Project AquaDEB (2007–2011, http://www.ifremer.fr/aquadeb/) is joining skills and expertise of some French and Dutch research institutes and universities to analyse the physiological flexibility of aquatic organisms and to link it to ecological and evolutionary processes within a common theoretical framework for quantitative bioenergetics [Kooijman, S.A.L.M., 2000. Dynamic energy and mass budgets in biological systems. Cambridge University Press, Cambridge]. The main scientific objectives in AquaDEB are i) to study and compare the sensitivity of aquatic species (mainly molluscs and fish) to environmental variability of natural or human origin, and ii) to evaluate the related consequences at different biological levels (individual, population, ecosystem) and temporal scales (life cycle, population dynamics, evolution). At mid-term life, the AquaDEB collaboration has already yielded interesting results by quantifying bio-energetic processes of various aquatic species (e.g. molluscs, fish, crustaceans, algae) with a single mathematical framework. It has also allowed to federate scientists with different backgrounds, e.g. mathematics, microbiology, ecology, chemistry, and working in different fields, e.g. aquaculture, fisheries, ecology, agronomy, ecotoxicology, climate change. For the two coming years, the focus of the AquaDEB collaboration will be in priority: (i) to compare energetic and physiological strategies among species through the DEB parameter values and to identify the factors responsible for any differences in bioenergetics and physiology; and to compare dynamic (DEB) versus static (SEB) energy models to study the physiological performance of aquatic species; (ii) to consider different scenarios of environmental disruption (excess of nutrients, diffuse or massive pollution, exploitation by man, climate change) to forecast effects on growth, reproduction and survival of key species; (iii) to scale up the models for a few species from the individual level up to the level of evolutionary processes.     

Biodiversity patterns of free-living marine nematodes in a tropical bay: Cienfuegos, Caribbean Sea

Spatial and temporal biodiversity patterns of free-living marine nematodes were studied in Cienfuegos Bay, a tropical semi-enclosed basin in the Caribbean Sea. Taxonomic (to species level) and functional (biological trait) approaches were applied for describing the assemblage structure and relating it to abiotic environment based on a sampling scheme in six subtidal stations and three months. Biological trait approach added relevant information to species pattern regarding relationships between diversity patterns and the abiotic environment. The most common morphotypes were deposit feeding nematodes, with colonising abilities of 2–3 (in a scale from 1 to 5), tail conical cylindrical or filiforme and body slender; and their abundance were correlated with depth, organic matter and silt/clay fraction. In spite of a high turnover of species, functional diversity of assemblages did not change notably in space and time. A result probably due to sampling of the habitat pool of species and to low heterogeneity of the studied muddy bottoms. Chemical pollution (organic enrichment and heavy metals) and hydrodynamic regime possibly drove the biodiversity patterns. Spatial distribution of assemblages support the existence of two well differentiated basins inside the bay, the northern basin more polluted than the southern one. The low hydrodynamic regime would determine a poor dispersion of nematodes resulting in high spatial variance in the assemblage structure; and also the associated hypoxic conditions and pollutants in sediments can explain the dominance of tolerant nematode species such as Daptonema oxycerca, Sabatieria pulchra, Terschellingia gourbaultae, and Terschellingia longicaudata. A comparison of spatial–temporal patterns of biodiversity between Cienfuegos Bay and other semi-enclosed bays in temperate regions suggests several similarities: nematode assemblages are strongly influenced by anthropogenic disturbance, temporal trends are weak or overridden by spatial ones, and few cosmopolitan genera/species tolerant to pollution and hypoxic conditions are dominant.     

MedFlux: Investigations of particle flux in the Twilight Zone

The MedFlux project was devised to determine and model relationships between organic matter and mineral ballasts of sinking particulate matter in the ocean. Specifically we investigated the ballast ratio hypothesis, tested various commonly used sampling and modeling techniques, and developed new technologies that would allow better characterization of particle biogeochemistry. Here we describe the rationale for the project, the biogeochemical provenance of the DYFAMED site, the international support structure, and highlights from the papers published here. Additional MedFlux papers can be accessed at the MedFlux web site (http://msrc.sunysb.edu/MedFlux/).     

Interaction of linear waves with an array of infinitely long horizontal circular cylinders in a two-layer fluid of infinite depth

The linear water wave scattering and radiation by an array of infinitely long horizontal circular cylinders in a two-layer fluid of infinite depth is investigated by use of the multipole expansion method. The diffracted and radiated potentials are expressed as a linear combination of infinite multipoles placed at the centre of each cylinder with unknown coefficients to be determined by the cylinder boundary conditions. Analytical expressions for wave forces, hydrodynamic coefficients, reflection and transmission coefficients and energies are derived. Comparisons are made between the present analytical results and those obtained by the boundary element method, and some examples are presented to illustrate the hydrodynamic behavior of multiple horizontal circular cylinders in a two-layer fluid. It is found that for two submerged circular cylinders the influence of the fluid density ratio on internal-mode wave forces is more appreciable than surface-mode wave forces, and the periodic oscillations of hydrodynamic results occur with the increase of the distance between two cylinders; for four submerged circular cylinders the influence of adding two cylinders on the wave forces of the former cylinders is small in low and high wave frequencies, but the influence is appreciable in intermediate wave frequencies.     

A stock assessment for Illex argentinus in Southwest Atlantic using an environmentally dependent surplus production model

The southern Patagonian stock(SPS) of Argentinian shortfin squid, Illex argentinus, is an economically important squid fishery in the Southwest Atlantic. Environmental conditions in the region play an important role in regulating the population dynamics of the I. argentinus population. This study develops an environmentally dependent surplus production(EDSP) model to evaluate the stock abundance of I. argentines during the period of 2000 to 2010. The environmental factors(favorable spawning habitat areas with sea surface temperature of 16–18°C) were assumed to be closely associated with carrying capacity(K) in the EDSP model. Deviance Information Criterion(DIC) values suggest that the estimated EDSP model with environmental factors fits the data better than a Schaefer surplus model without environmental factors under uniform and normal scenarios.The EDSP model estimated a maximum sustainable yield(MSY) from 351 600 t to 685 100 t and a biomass from 1 322 400 t to1 803 000 t. The fishing mortality coefficient of I. argentinus from 2000 to 2010 was smaller than the values of F_(0.1) and F_(MSY). Furthermore, the time series biomass plot of I. argentinus from 2000 to 2010 shows that the biomass of I.argentinus and this fishery were in a good state and not presently experiencing overfishing. This study suggests that the environmental conditions of the habitat should be considered within squid stock assessment and management.     

Calibration and use of continuous heat-type automated seepage meters for submarine groundwater discharge measurements

Submarine groundwater discharge (SGD) assessments were conducted both in the laboratory and at a field site in the northeastern Gulf of Mexico, using a continuous heat-type automated seepage meter (seepmeter). The functioning of the seepmeter is based on measurements of a temperature gradient in the water between downstream and upstream positions in its flow pipe. The device has the potential of providing long-term, high-resolution measurements of SGD. Using a simple inexpensive laboratory set-up, we have shown that connecting an extension cable to the seepmeter has a negligible effect on its measuring capability. Similarly, the observed influence of very low temperature (≤3 °C) on seepmeter measurements can be accounted for by conducting calibrations at such temperatures prior to field deployments. Compared to manual volumetric measurements, calibration experiments showed that at higher water flow rates (>28 cm day⁻¹ or cm³ cm⁻² day⁻¹) an analog flowmeter overestimated flow rates by ≥7%. This was apparently due to flow resistance, turbulence and formation of air bubbles in the seepmeter water flow tubes. Salinity had no significant effect on the performance of the seepmeter. Calibration results from fresh water and sea water showed close agreement at a 95% confidence level significance between the data sets from the two media (R² = 0.98). Comparatively, the seepmeter SGD measurements provided data that are comparable to manually-operated seepage meters, the radon geochemical tracer approach, and an electromagnetic (EM) seepage meter.     

Storm surge induced flux through multiple tidal passes of Lake Pontchartrain estuary during Hurricanes Gustav and Ike

In September 2008, Hurricanes Gustav and Ike generated major storm surges which impacted the Lake Pontchartrain estuary in Louisiana. This paper presents analyses of in situ measurements acquired during these storm events. The main data used in the analyses were from three bottom mounted moorings equipped with conductivity, temperature, and depth sensors, acoustic Doppler current profilers (ADCPs), and a semi-permanent laterally mounted horizontal acoustic Doppler profiler (ADP). These moorings were deployed in the three major tidal channels that connect Lake Pontchartrain with the coastal ocean. A process similar to tidal straining was observed: the vertical shear of the horizontal velocity was negligible during the inundation stage, but a shear of 0.8 m/s over a less than 5 m water column was recorded during the receding stage, 2–3 times the normal tidal oscillations. The surge reached its peak in the Industrial Canal 1.4–2.1 h before those in the other two channels. The inward flux of water lasted for a shorter time period than that of the outward flux. The inward flux was also observed to have much smaller magnitude than the outward flux (∼960–1200 vs. 2100–3100 million m³). The imbalance was believed to have been caused by the additional water into Lake Pontchartrain through some small rivers and inundation over the land plus rainfall from the hurricanes. The flux through the Industrial Canal was 8–12%, while the flux through the other two tidal passes ranged between 17% and 70% of the total, but mostly split roughly half-half of the remaining (∼88–92% of the total).