A software solution for point counting. Petrographic thin section analysis as a case study

In the field of geology, as in many other fields, a common problem is the analysis of 2D sections. An example of this is the petrographic study of rock samples, i.e., the quantification of its mineral components and the percentages of each phase present in it. Conventionally, this quantification has been determined by point counting performed on thin sections. Although point counting is very time consuming, it is of common use in several domains including geology, biology, medicine, and materials sciences, among others. Point counting in thin sections is normally conducted through mechanical or electromechanical devices attached to a microscope; such devices are very expensive, offer limited functionality, and are very time consuming. In this contribution, we introduce an interactive visualization application called Rock.AR that reduces the amount of time required to apply this technique and simplify its work flow. It provides visual tools like distortion techniques, overview + detail, and statistics to assist the technique. A comparison between this application and similar tools through users' experiences is provided. We compare the time it takes to complete a session of point counting and the tools' usability.     

Diagenetic model of carbonate rocks of Guri Member of Mishan Formation (Lower to Middle Miocene) SE Zagros basin,Iran

In order to understand the post-depositional history of carbonate rocks of Guri Member (Lower to Middle Miocene), three stratigraphic sections were selected in north Bandar-Abbas in southeast of Iran. Sampling was carried out, analyzed for selective parameters such as oxygen and carbon isotopic compositions (δ¹⁸O and δ¹³C) and interpreted in the present study. We recognized several diagenetic processes including micritization, cementation, neomorphism, compaction, dissolution, silicification, dolomitization, fracturing and vein filling. Some of the diagenetic processes occurred at different conditions, so in order to achieve precise interpretation, samples from different carbonate components such as, micrite, fracture cement, solution pore cement, intergranular cement, and some biotic allochems were analyzed. In this study micrite samples were subdivided into two groups including micro-spary and micrite. They were recognized under Cathodoluminescence microscope. In addition, micrite samples were classified into five groups based on their depositional environments: supratidal, lagoon, coral bar, open sea, and open basin. There were minor changes in stable isotope ratios based on the sedimentary environments, stratigraphy successions, and micro-spary or micrite properties. In this study, similar calcite cements in petrography studies were differentiated by stable isotope data. Those calcite cements have formed in different diagenetic environments such as meteoric and burial cements. Paragenetic sequence of carbonate rocks were interpreted by integration of petrographic and isotopic studies. We have reconstructed diagenetic models of Guri Member into four stages including marine, meteoric, burial, and uplifting.     

Can agriculture support climate change adaptation, greenhouse gas mitigation and rural livelihoods? insights from Kenya

Changes in the agriculture sector are essential to mitigate and adapt to climate change, meet growing food demands, and improve the livelihoods of poor smallholder producers. What agricultural strategies are needed to meet these challenges? To what extent are there synergies among these strategies? This paper examines these issues for smallholder producers in Kenya across several agroecological zones. Several practices emerge as triple wins, supporting climate adaptation, greenhouse gas mitigation, and profitability goals. In particular, integrated soil fertility management and improved livestock feeding are shown to provide multiple benefits across all agroecological zones examined. Triple wins of other agricultural practices are limited to specific agroecological zones. Irrigation and soil and water conservation, for example, are essential for adaptation, mitigation, and profitability in arid areas. The results suggest that agricultural investments targeted toward these triple-win strategies will have the greatest payoff in terms of increased resilience of farm and pastoralist households and global climate change mitigation. To reap the benefits of triple-win strategies will require that policymakers, researchers, and practitioners move away from isolated approaches focused on either adaptation or mitigation or rural income generation toward a more holistic assessment of joint strategies as well as their tradeoffs and synergies.     

Discovery of the 'missing' mode in HR 1217 by the Whole Earth Telescope

HR 1217 is a prototypical rapidly oscillating Ap star that has presented a test to the theory of non-radial stellar pulsation. Prior observations showed a clear pattern of five modes with alternating frequency spacings of 33.3 and 34.6 μHz, with a sixth mode at a problematic spacing of 50.0 μHz (which equals  1.5×33.3 μHz)  to the high-frequency side. Asymptotic pulsation theory allowed for a frequency spacing of 34 μHz, but Hipparcos observations rule out such a spacing. Theoretical calculations of magnetoacoustic modes in Ap stars by Cunha predicted that there should be a previously undetected mode 34 μHz higher than the main group, with a smaller spacing between it and the highest one. In this Letter, we present preliminary results from a multisite photometric campaign on the rapidly oscillating Ap star HR 1217 using the 'Whole Earth Telescope'. While a complete analysis of the data will appear in a later paper, one outstanding result from this run is the discovery of a newly detected frequency in the pulsation spectrum of this star, at the frequency predicted by Cunha.     

Dust-induced chemical differentiation in dense regions

Dust grains respond to the physical and chemical conditions of the interstellar region in which they are embedded. The interaction produces an extinction curve which depends on the local environment and on the past history of the dust grains. In this work we present a theoretical study of the effects of radial variations of dust extinction properties on gas-phase chemistry in spherical core–halo clouds. We use observational constraints on the variation range of the extinction curve, and we analyse if the degree of dust environmental processing could be reflected by chemical signatures in the gas-phase molecular concentrations. The results of this work show that significant variations in the photodestruction rates and in the thermal profile of the cloud might induce chemical patterns otherwise excluded in the standard dense-cloud chemistry. Some discrepancies between observations and theoretical provisions are discussed in the light of the present results.     

Geoeffectiveness of interplanetary shocks during solar minimum (1995–1996) and solar maximum (2000)

Plasma and magnetic field parameter variations across fast forward interplanetary shocks are analyzed during the last solar cycle minimum (1995–1996, 15 shocks), and maximum year 2000 (50 shocks). It was observed that the solar wind velocity and magnetic field strength variation across the shocks were the parameters better correlated with Dst. Superposed epoch analysis centered on the shock showed that, during solar minimum, B _z profiles had a southward, long-duration variation superposed with fluctuations, whereas in solar maximum the B _z profile presented 2 peaks. The first peak occurred 4 hr after the shock, and seems to be associated with the magnetic field disturbed by the shock in the sheath region. The second peak occurred 19 hr after the shock, and seems to be associated with the ejecta fields. The difference in shape and peak in solar maximum (Dst peak =−50 nT, moderate activity) and minimum (Dst peak =−30 nT, weak activity) in average Dst profiles after shocks are, probably, a consequence of the energy injection in the magnetosphere being driven by different interplanetary southward magnetic structures. A statistical distribution of geomagnetic activity levels following interplanetary shocks was also obtained. It was observed that during solar maximum, 36% of interplanetary shocks were followed by intense (Dst≤−100 nT) and 28% by moderate (−50≤Dst <−100 nT) geomagnetic activity. During solar minimum, 13% and 33% of the shocks were followed by intense and moderate geomagnetic activity, respectively. Thus, during solar maximum a higher relative number of interplanetary shocks might be followed by intense geomagnetic activity than during solar minimum. One can extrapolate, for forecasting goals, that during a whole solar cycle a shock has a probability of around 50–60% to be followed by intense/moderate geomagnetic activity.     

Annual trace element cycles in calcite–aragonite speleothems: evidence of drought in the western Mediterranean 1200–1100 yr BP

Each of two calcitic stalagmites from Grotte de Clamouse, Herault, southern France, displays a discrete aragonite layer dated at around 1100 yr BP. The layer of fanning aragonite ray crystals is immediately preceded by calcite with Mg and Sr compositions that are uniquely high for the past 3 kyr. Trace element compositions close to the boundary between original aragonite and calcite are consistent with quasi‐equilibrium partitioning of trace elements between the phases. Study of modern dripwaters demonstrates that pronounced covariation of Mg/Ca and Sr/Ca ratios in dripwater occurs owing to large amounts of calcite precipitation upflow of the drips that fed the stalagmites. Trace element to Ca ratios are enhanced during seasonally dry periods. Ion microprobe data demonstrate a pronounced covariation of trace elements, including Mg and Sr in calcite, and Sr, U and Ba in aragonite. The mean peak spacing is close to the long‐term mean of annual growth rates determined by differences in U‐series ages and so the trace element peaks are interpreted as annual. The trace element chemistry of the stalagmites on annual to inter‐annual scales thus directly reflects the amounts of prior calcite precipitation, interpreted as an index of aridity. The longer‐term context is a multi‐decadal period of aridity (1200–1100 yr BP) possibly correlated with an analogous episode in Central America. The arid period culminated in the nucleation of aragonite, but within a decade was followed by a return to precursor conditions. Copyright © 2005 John Wiley & Sons, Ltd.     

The Geochemistry of Lake Joyce, McMurdo Dry Valleys, Antarctica

Lake Joyce is one of the least studied lakes of the McMurdo Dry Valleys. Similar to other lakes in this region, Lake Joyce is a closed-basin, permanently ice-covered, meromictic lake. We present here a detailed investigation of major ions, nutrients, and dissolved trace elements for Lake Joyce. Specifically, we investigate the role of iron and manganese oxides and hydrous oxides in trace metal cycling.Lake Joyce is characterized by fresh, oxic waters overlying an anoxic brine, primarily Na–Cl. Surface waters have a maximum nitrate concentration of 26M with a molar dissolved inorganic nitrogen to phosphorus ratio of 477. The supply of nitrogen is attributed to atmospheric deposition, possibly from polar stratospheric clouds. Dissolved phosphorus is scavenged by hydrous iron oxides. The pH is highest (10.15) just beneath the 7-m thick ice cover and decreases to a minimum of 7.29 in the redox transition zone. Dissolved Al exceeds 8M in surface waters, and appears to be controlled by equilibrium with gibbsite. In contrast, concentrations of other trace elements in surface waters are quite low (e.g., 5.4nM Cu, 0.19nM Co, <20pM La). Dissolved Fe, Mn, Ni and Cd were below our detection limits of 13 nM, 1. 8 nM, 4.7 nM and 15pM (respectively) in surface waters. There was a 6-m vertical separation in the onset of Mn and Fe reduction, with dissolved Mn appearing higher in the water column than Fe. Based on thermodynamic calculations, dissolved Mn appears to be controlled by equilibrium with hausmannite (Mn3O4). Co tracks the Mn profile closely, suggesting Co(III) is bound in the lattice of Mn oxides, whereas the Ce profile is similar, yet the Ce anomaly suggests oxidative scavenging of Ce. Release of Cu, Ni, Cd and trivalent REE appears to be controlled by pH-induced desorption from Fe and Mn oxides, although Cu (and perhaps Ni) may be scavenged by organic matter in surface waters.