Evaluation of the Variability of the Shoreline of the Tsimlyansk Reservoir and Lake Ilmen according to Space Sounding Data

Izvestiya, Atmospheric and Oceanic Physics - This article presents the results of a study of the dynamics of the shorelines of Lake Ilmen and the Tsimlyansk Reservoir to indicate the location of...     

Acoustic Monitoring of Gas Emission Processes in the Arctic Shelf Seas

Oceanology - The emission of natural gas from the seafloor to the surface in shelf areas of the Arctic seas is of increasing interest among researchers. Recently, various types of acoustic...     

Response of juvenile lemon sharks, Negaprion brevirostris, to a magnetic barrier simulating a beach net

Beach nets are preventative devices used to minimize interactions between potentially harmful sharks and unsuspecting swimmers. Quantitative studies demonstrated that beach nets drastically reduced local elasmobranch populations, as well as caused considerable bycatch mortality. For this experiment, a beach net-like device was constructed and the behaviors of six juvenile lemon sharks (Negaprion brevirostris) were analyzed. Induced by olfactory and gustatory cues, sharks were given the choice to swim through a magnetic or control opening in the net. In the first trial, all six sharks avoided the magnetic region and significantly preferred to swim through the control region of the fence. The magnetic stimulus no longer affected the swimming behavior of three sharks retested after resting 24 h. Results from the retested sharks were correlated with those from repeated tonic immobility trials, which demonstrated a linear decrease in sensitivity to repeated magnetic stimulation. This study serves as a baseline experiment demonstrating that permanent magnets may substantially decrease elasmobranch mortality within beach nets.     

Analysis of photosynthetic picoeukaryote community structure along an extended Ellett Line transect in the northern North Atlantic reveals a dominance of novel prymnesiophyte and prasinophyte phylotypes

Photosynthetic picoeukaryotes (PPEs) of a size <3 ??m can contribute significantly to primary production. Here, PPE community structure was analysed along an extended Ellett Line transect, an area in the North Atlantic well studied by physical oceanographers but largely neglected in the field of microalgal ecology. Distribution patterns of specific PPE classes were determined using dot-blot hybridization analysis, while the taxonomic composition of specific PPE classes was revealed by phylogenetic analysis of plastid 16S rRNA gene sequences. In addition, we performed fluorescent in situ hybridization (FISH) analysis of seawater samples collected along the transect to provide a PCR-independent survey of class level PPE distribution patterns. We found the PPE community was dominated by members of the Prymnesiophyceae, Prasinophyceae and Mamiellophyceae. Interestingly, phylogenetic analysis revealed several novel Prymnesiophyceae and Prasinophyceae phylotypes (with only 85-96% identity to neighbouring sequences) within lineages for which cultured counterparts are unknown.     

Integration of biochemical, histochemical and toxicogenomic indices for the assessment of health status of mussels from the Tamar Estuary, U.K

The aim of this study was to examine whether a combination of biochemical, histopathological and toxicogenomic data could be used as a valuable tool for the assessment of biological risk associated with pollutants within the Tamar River and Estuary, S.W. England, U.K. Accordingly, biochemical and histopathological biomarkers (protein carbonyls, lipofuscin, neutral lipids, lysosomal stability [N-acetyl-β-hexosaminidase and neutral red], lysosomal volume, ferric reducing antioxidant power [FRAP] and malonaldehyde [MDA]) and gene expression profiles were assessed in 5 sites from the Tamar River and Estuary (Neal Point, Town Quay, Wilcove, Cremyll Ferry and Whitsand; and a reference site, Trebarwith Strand, N. Cornwall). PAHs were measured in mussel tissue and sediment and metals were measured in mussel tissue only. Data from the biomarkers was integrated into a Mussel Expert System (MES) model to produce a simple assessment of mussel stress. Clear gradients of mussel toxicity were identified by the biomarkers (with the exception of neutral lipids) with the highest impacted animals found furthest up the Tamar, whilst the MES was unable to identify a gradient of effect. Gene expression profiles also indicated a gradient of stress with the greatest number of significantly up- or down- regulated genes found at the uppermost 2 sites. The MES did, however, determine that mussels from all sites, except the reference site, were highly stressed; a conclusion that could not be inferred from the biomarker data alone. It is concluded that the MES is a valuable tool that permits integration and interpretation of complex sets of biomarker data by identifying the biological meaning of biomarker changes.     

Physical and biological response of the Arabian Sea to tropical cyclone Phyan and its implications

The response to the tropical cyclone Phyan, which developed in the eastern Arabian Sea during 9-11 November 2009, was rapid cooling of sea surface temperature (SST), enhancement of chlorophyll a and two-fold increase in net primary productivity (NPP). Cooling of SST was immediate in response to the strong wind-mixing, and the subsequent upward Ekman pumping sustained the cooling even after the dissipation of Phyan. The biological response mediated by the upward Ekman pumping driven vertical transport of subsurface nutrient showed a time lag of 3-4 days. The CO? flux to the atmosphere associated with Phyan was 0.123 Tg C, which accounted for ~85% of the total out-gassing from the eastern Arabian Sea during November. Thus, an increased occurrence of cyclones in a warming environment will lead to an enhanced biomass production and also increase in CO? out-gassing.     

Nitrogen uptake and primary productivity rates in the Mid-Atlantic Bight (MAB)

Nutrient concentrations, primary productivity, and nitrogen uptake rates were measured in coastal waters of the Mid-Atlantic Bight over a two-year period that included measurements from all four seasons. In order to assess carbon productivity and nitrogen demand within the context of the physical environment, the region was divided into three distinct hydrographic regimes: the Chesapeake and Delaware Bay outflow plumes (PL), the southern Mid-Atlantic shelf influenced by the Gulf Stream (SS), and the mid-shelf area to the north of the Chesapeake Bay mouth (MS). Annual areal rates of total nitrogen (N) uptake were similar across all regions (10.9 ± 2.1 mol N m⁻² y⁻¹). However, annual areal rates of net primary productivity were higher in the outflow plume region (43 mol C m⁻² y⁻¹), than along the Mid-Atlantic shelf and in areas influenced by the Gulf Stream (41 and 34 mol C m⁻² y⁻¹, respectively). Rates of net primary productivity were not well correlated with Chl a concentrations and were uncoupled with net N uptake rates. Seasonally averaged annual areal rates of net primary productivity for the Mid-Atlantic Bight measured in this study were higher than those calculated in previous decades and provide important validation information for biogeochemical models and satellite remote sensing algorithms developed for the region.     

Microbial pollution indicators and culturable heterotrophic bacteria in a Mediterranean area (Southern Adriatic Sea Italian coasts)

In the present study we evaluated the degree of microbial water pollution along the coast line between Brindisi and Santa Maria di Leuca (Southern Adriatic Sea) as well as the culturable heterotrophic bacteria abundances and biodiversity in relation to the microbiological quality of the water. A total of 3773 colonies were isolated, subcultured and identified by several morphological, cultural and biochemical methods including the standardized API 20 E and API 20 NE tests. Along the examined coastal tract the microbial pollution indicators were always below the tolerance limits for bathing waters defined by the CEE directive, suggesting a good sanitary quality. Concerning culturable heterotrophic bacteria, different temporal density trends were observed in the four sites in relation to their geographical position. A positive relationship between the bacterial abundances and the temperature was observed in S. Cataldo and Otranto. The culturable bacterial community was mainly composed of the genera Aeromonas, Pseudomonas, Photobacterium and Flavobacterium. The Enterobacteriaceae family represented a conspicuous component of the bacterial community too. Bacilli were predominant among the Gram-positive bacteria. Of interest is the isolation of yeasts (2% at the surface and 1% at the bottom) taking into account their capability of biodegradation of various materials. Because of the low level of microbial pollution recorded, our results are indicative of the natural variation and diversity of the culturable bacterial community in such an oligotrophic ecosystem and could represent a good point of comparison with other ecosystems as well as a baseline for long term studies aimed to evaluate the effects of environmental fluctuations and human impacts on this aspect of biodiversity in coastal areas.     

Development of the POLCOMS–WAM current–wave model

The continuous research and improvement of ocean modelling helps to provide a more sustainable development of coastal and offshore regions. This paper focuses on ocean modelling at the NW Mediterranean using the POLCOMS–WAM model with new developments. The Stokes’ drift effect on currents has been included and the distribution of surface stress between waves and currents has also been considered. The system is evaluated in the NW Mediterranean and an evaluation of different forcing terms is performed. The temperature and salinity distributions control the main patterns of the Mediterranean circulation. Currents are typically small and therefore the modification of waves due to the effect of currents is minimal. However, the wave induced currents, mainly caused by a modified wind drag due to waves, produce changes that become an important source of mass transport. POLCOMS was able to reproduce the main Mediterranean features, its coupling with WAM can be a very useful tool for ocean and wave modelling in the Mediterranean and other shelf seas.