Analysis of medaka cytochrome P450 3A homotropic and heterotropic cooperativity

We have previously demonstrated that medaka CYP3A is associated with metabolism of several endobiotics including steroids and bile acids. In this study, we demonstrate that medaka CYP3A catalysis exhibits unusual kinetic behaviors consistent with allosteric interaction which cannot be described by hyperbolic kinetic models. Using 7-benzyloxy-4-(trifluoromethyl)-coumarin (BFC) and nonylphenol as CYP3A substrates, we describe both homotropic and heterotropic cooperative interactions. Given the role of CYP3A in maintaining the homeostatic balance for numerous endobiotics, enzymatic activation/inhibition by endocrine disruptors (EDCs) represents a putative (non-genomic) mechanism for endocrine disruption.     

Wave run-up and overtopping on smooth and rough slopes of coastal structures

A series of hydraulic model tests has been carried out in a glass wave flume to investigate the influences of wave height, wave period, wave steepness, surf similarity parameter, roughness, layer thickness and porosity on wave run-up and overtopping of 1:2 sloped impermeable and permeable breakwaters fronted by a 1:10 gentle, smooth beach slope. The analysis of results involves the correlation between the overtopping energy transfer with the relative wall height and the relationship between wave run-up and overtopping rate. Further, measured wave run-up and overtopping rates are compared with the results given in the Shore Protection Manual (1984), Automated Coastal Engineering System (1992)and results of other investigators.     

Biogeochemical impacts due to mesoscale eddy activity in the Sargasso Sea as measured at the Bermuda Atlantic Time-series Study (BATS)

A comparison of monthly biogeochemical measurements made from 1993 to 1995, combined with hydrography and satellite altimetry, was used to assess the impacts of nine eddy events on primary productivity and particle flux in the Sargasso Sea. Measurements of primary production, thorium-234 flux, nitrate+nitrite, and photosynthetic pigments made at the US JGOFS Bermuda Atlantic Time-series Study (BATS) site were used. During the 3 years of this study, four out of six high thorium-234 flux events occurred during the passage of an eddy. Primary production nearly as high as the spring bloom maximum was observed in two mode-water eddies (May 1993 and July 1995). The 1994 spring bloom at BATS was suppressed by the passage of an anticyclone. Distinct phytoplankton community shifts were observed in mode-water eddies, which had an increased percentage of diatoms and dinoflagellates, and in cyclones, which had an increased percentage of Synechococcus. These variations in species composition within mode-water eddies and cyclones may be associated with the ages of the sampled eddies, and/or differences in physical, chemical, and biological factors in these two distinct eddy types. In general, eddies that were 1–2 months old elicited a large biological response; eddies that were 3 months old may show a biological response and were accompanied by high thorium flux; eddies that were 4 months old or older did not show a biological response or high thorium flux. A conceptual model depicting temporal changes during eddy upwelling, maturation, and decay can explain the observations in all seven upwelling eddies present in the time-series investigated herein.     

Spatial patterns and environmental risks of ringnet fishing along the Kenyan coast

Ringnet fishing began in the early 20th century and is practised worldwide, mainly to target nearshore pelagic species. The method was introduced to Kenya’s coastal waters by migrant fishers from Tanzania. However, the impacts of this fishing gear remain poorly assessed. We assessed the spatial distribution of ringnet fishing effort and its possible effects on ecosystem components, such as coral reefs, marine megafauna and marine protected areas, on the south coast of Kenya. We tracked 89 ringnet fishing trips made from December 2015 to January 2016 and used spatial multicriteria analysis to determine hotspots of possible environmental risks. The results showed that habitat type and bathymetric profile influenced the spatial distribution of ringnet fishing effort. Mixed seagrass and coral habitats had the highest concentration of the effort. Most of the habitats in the study area were moderately exposed to the impacts of the ringnet fishery. The study identifies high-risk areas that require spatial measures to minimise possible environmental risks of the gear both to habitats and to endangered sea turtles.     

Longitudinal strength of a high-speed ferry

The longitudinal strength of the high-speed ferry was investigated by subjecting the ship's hull girder to long-term loads obtained from a frequency-domain panel code. Prior to the statistical analysis, linearly computed transfer functions were corrected for nonlinear effects, yielding two sets of transfer functions valid for different wave amplitudes. One set corresponded to the hogging condition; the other set, to the sagging condition. Two regular equivalent design waves were specified that resulted in loads representing the most severe global design load conditions. The still-water loading condition, yielding a still-water vertical bending moment in hogging, was superimposed on the wave-induced loads to obtain the total (design) loads in hogging. For the sagging condition only, additional impact-related loads were superimposed to obtain the total (design) loads in sagging. A finite element model of the ship's structure was subjected to pressure distributions according to the two regular design waves. For comparison with classification society rule values, a simple beam theory strength analysis of the ship's midship section was performed first, and then another finite element analysis was carried out, whereby the imposed loads were tuned to the rule values of vertical bending moments. Rule-based magnitudes of nominal maximum longitudinal stress deviated significantly (25–39%) from comparable stresses obtained by the panel code based finite element analysis. However, stresses obtained from the rule-based finite element analysis agreed more favorably, especially in hogging. In the uppermost deck, for example, the panel code based compressive stress was only 9% larger than the comparable stress from the rule-based finite element analysis.     

Variations in wave direction estimated using first and second order Fourier coefficients

In most design applications such as alignment of the berthing structure and breakwater alignment, it becomes necessary to determine the direction of design wave. There are two different approaches to determine wave direction. One involves the use of first order Fourier coefficients (mean wave direction) while the other uses second order Fourier coefficients (principal wave direction). Both the average wave direction over the entire frequency range (0.03–0.58 Hz) and the direction corresponding to the peak frequency are used in practice. In the present study, comparison is made on wave directions estimated based on first and second order Fourier coefficients using data collected at four locations in the west and east coasts of India. Study shows that at all locations, the mean and principal wave directions for frequencies ranging from 0.07 to 0.25 Hz (±0.5 times peak frequency) co-vary with a correlation coefficient of 0.99 but at lower and higher frequencies, difference between the parameters is large. Average difference between the mean wave direction at peak frequency and the average over the frequency related to spectral energy more than 20% of maximum value is less, around 13°. Study shows that average difference in the sea and swell directions is around 39°.     

Development of two novel CYP-antibodies and their use in a PCB exposure experiment with Mytilus edulis

In an attempt to learn more about the cytochrome P450 (CYP) system of mussels, we used protein databases and alignment software to extract highly conserved CYP sequences. From these alignments synthetic peptides were produced and used for rabbit immunisation, which yielded polyclonal antibodies against the CYP families 2 and 4. The antibodies were evaluated with Western Blot and ELISA assays, using digestive gland microsomal samples from the mussel Mytilus edulis. Western Blots revealed immunoreactions for both antibodies. The anti-CYP2 sequence rendered one major immunopositive protein of ≈49 kDa size, and weak signals for proteins of ≈41 and 56 kDa size. The anti-CYP4 sequence rendered two major bands of ≈56 and 59 kDa size, and also a weak immunoreaction with a protein of ≈43 kDa size. ELISA rendered only weak signals even with a 1:50 dilution of IgG-purified serum. A 10-day exposure to Aroclor 1254 did not appear to affect any of the immunopositive proteins, while total PCBs in soft bodies increased from 14–40 ng/g DW in controls to 373–638 ng/g DW in exposed mussels.     

Simulating a heavy metal spill under estuarine conditions: Effects on the clam Scrobicularia plana

We describe the effect of heavy metals Zn, Cd, Pb and Cu on the induction of methallothioneins on the clam Scrobicularia plana along a salinity gradient simulated under laboratory conditions. The clams were exposed to constant heavy metal concentrations in a dynamic estuary simulator during a 15-day assay to investigate possible induction of metal-binding proteins in them. The concentration of heavy metals in water was analysed. Clams were analysed for methallothionein concentrations. The speciation of Zn, Cd, Pb and Cu along the salinity gradient was modelled. Zn showed the highest concentrations and its prevalent species was the free ion. Intersite differences have been observed in methallothionein concentration and related to the salinity gradient. It seems that synthesis of methallothioneins is the result of physiological forces acting in concert with the changes in the chemical speciation of metals, owing to the trace metals uptake is controlled by means of an interaction of physiology and physicochemistry.