Effects of hypoxia on benthic organisms in Tokyo Bay, Japan: a review

Bottom hypoxia (dissolved oxygen concentration ≤2 ml l(-1)) from anthropogenic eutrophication is a growing global concern. Here, we summarized characteristics of hypoxia and its effects on benthic organisms in Tokyo Bay. Despite recent decreases in nutrient inputs, hypoxia has been increasing in duration and spatial extent, suggesting that the substantial loss of tidal flats from reclamation is contributing to a decrease in the ability of Tokyo Bay to recycle nutrients. Hypoxia develops in the central to northern part of the bay and persists from spring to autumn, causing defaunation of benthic organisms. After the abatement of hypoxia in autumn, the defaunated area is recolonized, either through migration or larval settlement. Some megabenthic species with a spawning peak in spring and summer experience failure of larval settlement, which is probably due to hypoxia. The adverse effects of hypoxia are an impediment to recovery of benthic organisms in Tokyo Bay.     

Colliding plasma experiments to study astrophysical-jet relevant physics

We present the results of experiments in which jets are created through the collision of two laser-produced plasmas. These experiments use a simple ‘v-foil’ target design: two thin foils are placed at an angle of 140° to each other, and irradiated with a high-energy laser. The plasmas from the rear face of these foils collide and drive plasma jets moving with a velocity of ～300 km?s^?1. By choosing the foil thickness and material to suit the laser conditions available, it has proven possible to create plasma jets for which the relevant scaling parameters show significant overlap with those of outflows associated with young stellar objects (YSOs). Preliminary results are also shown from experiments to study the effect of an ambient gas on jet propagation. Nominally identical experiments are conducted either in vacuum or in an ambient medium of 5 mbar of nitrogen gas. The gas is seen to increase the jet collimation, and to introduce shock structures at the head of the outflow.     

Aerodynamic Scaling for Estimating the Mean Height of Dense Canopies

We used an aerodynamic method to objectively determine a representative canopy height, using standard meteorological measurements. The canopy height may change if the tree height is used to represent the actual canopy, but little work to date has focused on creating a standard for determining the representative canopy height. Here we propose the ‘aerodynamic canopy height’ h _a as the most effective means of resolving the representative canopy height for all forests. We determined h _a by simple linear regression between zero-plane displacement d and roughness length z ₀, without the need for stand inventory data. The applicability of h _a was confirmed in five different forests, including a forest with a complex canopy structure. Comparison with stand inventory data showed that h _a was almost equivalent to the representative height of trees composing the crown surface if the forest had a simple structure, or to the representative height of taller trees composing the upper canopy in forests with a complex canopy structure. The linear relationship between d and z ₀ was explained by assuming that the logarithmic wind profile above the canopy and the exponential wind profile within the canopy were continuous and smooth at canopy height. This was supported by observations, which showed that h _a was essentially the same as the height defined by the inflection point of the vertical profile of wind speed. The applicability of h _a was also verified using data from several previous studies.     

Comparison of community structures between particle-associated and free-living prokaryotes in tropical and subtropical Pacific Ocean surface waters

The subtropical and tropical regions of the Pacific Ocean are less productive than other oceanic regions. Although particle association should be an important strategy for heterotrophic prokaryotes to survive in such environments, we have little information on particle-associated (PA) prokaryotes in these regions. The specific aim of this study was to determine bacterial and archaeal community structures in the PA assemblage in comparison to the free-living (FL) assemblage in the North Pacific Subtropical Gyre, the South Pacific Subtropical Gyre, and an eastern equatorial region of the Pacific Ocean. Community profiles and phylogenetic identities were obtained by denaturing gradient gel electrophoresis, 454-pyrosequencing, and cloning followed by Sanger sequencing of 16Sr RNA gene amplicons. The distribution patterns of some abundant groups in three regions and two lifestyles (PA and FL) are shown in this study. Also, the PA community structures of bacteria differed from the FL ones and exhibited higher diversity than the FL ones, while the archaeal community structures did not show significant differences between PA and FL assemblages. We found that specific phylotypes of Gammaproteobacteria and Flavobacteria were abundant in PA bacterial assemblages, suggesting that they prefer to attach and consume particulate organic matter. In summary, the surface seawater PA assemblages represent very different bacterial and archaeal community structures between three different oceanic regions, each of which had distinct PA and FL community structures. These results imply that environmental factors determine microbial community structures.     

Phytoplankton community structure,as derived from pigment signatures,in the Kuroshio Extension and adjacent regions in winter and spring

The relationships between the spatiotemporal variation in phytoplankton community structure and environmental variables were investigated in the Kuroshio Extension (KE) region from winter to spring by analysing biomarker pigments. In winter, when the mixed layer was deep, phytoplankton communities were characterised by low biomass and a relatively high dominance of cryptophytes, followed by chlorophytes and pelagophytes. In spring, phytoplankton biomass generally increased with shoaling of the mixed layer. In April, when nitrate was not exhausted, chlorophytes became the most dominant group throughout the KE region, followed by cryptophytes. In May, in the south of the KE, phytoplankton biomass decreased with the depletion of nitrate and cyanobacteria dominated, whereas at the northern edge of the KE, phytoplankton biomass remained high. A predominance of diatoms occurred sporadically at the northern edge of the first ridge with a shallow mixed layer and an elevated nutricline. In contrast, the contribution of diatoms was low at the northern edge of the second ridge, despite high levels of nitrate and silicic acid, suggesting that factors other than macronutrient depletion limited diatom production. In general, the contribution of diatoms to the total phytoplankton biomass in the KE region was small in both winter (2.9%) and spring (16%). This study showed that the phytoplankton communities in the KE region during the spring bloom were generally composed of non-diatom phytoplankton groups, chlorophytes, cryptophytes, and prasinophytes. It is necessary to identify the roles of non-diatoms in grazing food chains to more accurately evaluate the KE as a nursery area for pelagic fish.     

The Intra-Seasonal Oscillation and its control of tropical cyclones simulated by high-resolution global atmospheric models

Project Athena is an international collaboration testing the efficacy of high-resolution global climate models. We compare results from 7-km mesh experiments of the Nonhydrostatic Icosahedral Atmospheric Model (NICAM) and 10-km mesh experiments of the Integrated Forecast System (IFS), focusing on the Intra-Seasonal Oscillation (ISO) and its relationship with tropical cyclones (TC) among the boreal summer period (21 May–31 Aug) of 8?years (2001–2002, 2004–2009). In the first month of simulation, both models capture the intra-seasonal oscillatory behavior of the Indian monsoon similar to the observed boreal summer ISO in approximately half of the 8-year samples. The IFS simulates the NW–SE-oriented rainband and the westerly location better, while NICAM marginally reproduces mesoscale organized convective systems and better simulates the northward migration of the westerly peak and precipitation, particularly in 2006. The reproducibility of the evolution of MJO depends on the given year; IFS simulates the MJO signal well for 2002, while NICAM simulates it well for 2006. An empirical orthogonal function analysis shows that both models statistically reproduce MJO signals similar to observations, with slightly better phase speed reproduced by NICAM. Stronger TCs are simulated in NICAM than in IFS, and NICAM shows a wind-pressure relation for TCs closer to observations. TC cyclogenesis is active during MJO phases 3 and 4 in NICAM as in observations. The results show the potential of high-resolution global atmospheric models in reproducing some aspects of the relationship between MJO and TCs and the statistical behavior of TCs.     

Meteorological features in Adélie Land during the austral summer season

Intensive meteorological observations were carried out at three sites along the slope of Adélie Land, Antarctica, with the goal of documenting summertime meteorological features of the katabatic zone. Three observational sites were placed at 5 km (D10), 110 km (D47), and 210 km (D57) from the coast, and frequency distributions of meteorological parameters were obtained at each site. Some meteorological features at D47 and D57 (interior sites) were different than at D10 (the coastal site); namely, mean air temperatures averaged for the whole observational period showed more pronounced diurnal variations at the interior sites than at the coastal site. These variations could be represented by sinusoidal curves. Wind speeds also showed diurnal variations, whose extremes appeared several hours later than the temperature extremes. The prevailing wind direction for all sites was southerly, about 30° east of the fall line, with small variations in wind direction. The strength and the height of temperature inversions were examined in two different layers (0 to 50 m, 50 to 300 m) at D47. A strong, shallow inversion layer formed at night, however, completely vanished during the day. On the other hand, an upper level inversion whose strength was weak persisted. The katabatic characteristics of the surface wind found at D47 in summer could be due to this upper level temperature inversion.A contribution to I.A.G.O. (Interaction-Atmosphere-Glace-Ocean).