Habitability analyses of aquatic bacteria

Habitability is defined as an ability of an organism to inhabit different environments. Habitability of organisms, however, cannot be inferred from analyses such as a whole genome or community structures. A recently developed database, the MetaMetaDB, gives us information from what kind of environments one particular 16S rRNA sequence data has ever been obtained, and thus enables us to infer the habitability of the bacterium in question. In order to check the applicability of this database to study the habitability of aquatic bacteria, samples collected at two Naka River stations, one estuarine station from Naka River Estuary, two coastal stations at Oarai in Ibaraki Prefecture, Japan and one station in the Kuroshio Current of the western North Pacific were examined. The phylotypes were tracked against the MetaMetaDB and it was reasonably found that the low-salinity stations were dominated by sequences with “freshwater and groundwater”, “human” and “wastewater” habitat identities, while the high-salinity stations were dominated by those with a “marine” identity. The phylotypes of low-salinity stations with a particular habitat identity were absent or rare in the high-salinity stations and vice versa. The MetaMetaDB also showed that sequences of Cyanobacteria or related phylogenetic groups may be present in the human gut, as well as the probable distribution of the relatives (ancestors/descendants/siblings) of some bacteria. These overall findings proved that the MetaMetaDB is useful as a new tool to infer microbial habitability and it gives us new information on the possible origin and ecology of microorganisms in the environments.     

Behaviour of physical parameters in extended gravity with hyperbolic function

In this paper, we have constructed the cosmological model of the universe in f(R, T) theory of gravity in a Bianchi type \(\mathrm{VI}_h\) universe for the functional f(R, T) in the form \(f(R,T)=\mu R+\mu T\), where R and T are respectively Ricci scalar and trace of energy momentum tensor and \(\mu \) is a constant. We have made use of the hyperbolic scale factor to find the physical parameters and metric potentials defined in the space-time. The physical parameters are constrained from different representative values to build up a realistic cosmological model aligned with the observational behaviour. The state finder diagnostic pair is found to be in the acceptable range. The energy conditions of the model are also studied.     

The structure and evolution of the coastal migrant fishery of Kenya

The current study was carried out over a period of one year to characterise the coastal migrant fishery of Kenya. The study looked at gears and vessels used, and ownership, demographic factors including ages of the fishers and family sizes, migrant activity and resource conservation at two main fishing villages in Kenya; Vanga and Mayungu in the south and north coasts, straddling at 4.663°S and 39.215°E and 3.214°S and 40.135°E respectively. Further, the fishers were categorised with regard to fishing, gear and vessel operation and trade, and evolution upon entry into the fishery was also assessed in order to define fisher-stake in the fishery for resource management and conservation planning. Structured questionnaires were used to interview the fishers, and data and information recorded from 1018 fishers during the survey. Migrants accounted for over 63% of the fishers in the two study sites, with majority of the fishers lying in the 15–45 year age bracket. Dependence level averages at 4–6 person families per fisher. Entry to the fishery was mainly at seamen level, progressing to fishermen and finally to fish dealers (tajiris), with the latter holding >62% capital in the fishery. Resource management in the fishery was low and only 10% of the fishers were active participants in marine conservation and community beach management issues. Fisher migrations were mainly monsoon season-linked (>58%) although social factors such as family location determined to a great extent the expanse of the migrations. The revival of fisheries cooperatives and active participation in community resource management and conservation groups is envisaged as the key to the sustainability of both the marine resources and the economies associated with this high mobility, cross-border fishery.     

A model of fish preference and mortality under hypoxic water in the coastal environment

Eutrophication and associated occurrence of hypoxic condition could cause significant damage to marine ecosystems, resulting in considerable economic losses to fisheries and aquaculture and is a major source of stress that fish often have to contend with in order to survive. This problem is likely to be exacerbated in the coming years, since the wastewater treatment facilities is unlikely to catch up with increasing human activities. Moreover, large-scale reclamation projects in coastal areas have recently been increased, and these activities certainly have adverse impacts on water quality and fisheries resources. Coastal construction has a significant role in the development of hypoxic water by changing the current and mixing pattern of water. Changes in species composition and decreases in species richness and diversity have been well documented in hypoxic systems. Hypoxia could cause endocrine disruption in fish and eliminate populations of sensitive species. Shallow coastal areas are of great importance for the special nursery of fish and shellfish and land reclamation in these areas cause strong damage to fisheries. Although the tolerance of aquatic life to hypoxia is known, there is no information about the mortality of fish caused by hypoxia because fish can swim around it and no modeling study has yet been carried out. Criteria that influence the movement of fish are: amounts of food, water temperature and depth, dissolved oxygen concentration and nature of seabed. However, among these, water temperature and dissolved oxygen are the most crucial parameters that affect survival, movement and growth of fish. In this paper, a model of fish preference and mortality for environmental conditions was developed and applied to the Hakata Bay where hypoxic water occurs every summer. For the purpose of this study, a field survey of fish behavior under hypoxic water was conducted by releasing marbled sale (Pleuronectes yokohamae) in the inner bay. Moreover, a series of preference tests for DO, salinity and temperature in the laboratory were conducted in order to decide preference parameters of fish. Using the results of both field and laboratory studies, a sub-module of fish preference and mortality was coded within an integrated hydrothermal and eutrophication model (CHEM) to predict the behavior and mortality of marbled sale when hypoxia would occur in the bay. The model could reasonably simulate the behavior of the fish under hypoxia. An assessment of the impact of the ongoing land reclamation project of about 401 ha in the Wajiro tidal flat zones at the head of the bay on the fisheries resources was also conducted using the model. The results showed that the artificial land lowered the mortality rate of fish under hypoxic condition in the bay during the summer period.     

Hornblende-dehydration melting in mafic rocks and the link between massif-type charnockite and associated granulites,Eastern Ghats Granulite Belt,India

A massif-type (intrusive) charnockite body in the Eastern Ghats granulite belt, India, is associated with hornblende-bearing mafic granulite, two-pyroxene granulite and enderbitic granulite. The charnockite is characterised by pervasive gneissic foliation (S₁). This is axial planar to the folded layers of hornblende-bearing mafic granulite (F₁ folds), indicating that the granulite protoliths were present before the development of S₁. Two-pyroxene granulite and enderbitic granulite occur as lenticular patches disposed along the foliation and hence could be syngenetic to S₁. The tonalitic to granodioritic, metaluminous to weakly peraluminous compositions and relatively high Sr/Rb of the charnockite are consistent with its derivation by partial melting of a mafic protolith. Strong Y depletion, lack of Sr depletion and strongly fractionated REE patterns with high (La/Yb)_N ratio, but relatively lower HREE (Gd/Lu) fractionation with marked positive Eu anomalies, suggest major residual hornblende (as well as garnet), but not plagioclase, consistent with the hornblende dehydration melting in the source rocks. Such a residual mineralogy is broadly similar to those of some of the hornblende-bearing mafic granulite inclusions, which have compositional features indicative of a restitic nature. Quantitative modelling supports an origin for the charnockite melts by partial melting of a hornblende-rich mafic granulite source, although source heterogeneity is very likely given the rather variable trace element contents of the charnockite. The whole-rock and mineral compositions of the two-pyroxene granulites and enderbitic granulites are consistent with them representing peritectic phase segregations of hornblende-dehydration melting. A clockwise P-T path implies that melting could have occurred in thickened continental crust undergoing decompression.Editorial responsibility: T.L. Grove     

Hydroclimatic teleconnection between global sea surface temperature and rainfall over India at subdivisional monthly scale

It is well established that sea surface temperature (SST) plays a significant role in the hydrologic cycle in which precipitation is the most important part. In this study, the influence of SST on Indian subdivisional monthly rainfall is investigated. Both spatial and temporal influences are investigated. The most influencing regions of sea surface are identified for different subdivisions and for different overlapping seasons in the year. The relative importance of SST, land surface temperature (LST) and ocean–land temperature contrast (OLTC) and their variation from subdivision to subdivision and from season to season are also studied. It is observed that LST does not show much similarity with rainfall series, but, in general, OLTC shows relatively higher influence in the pre‐monsoon and early monsoon periods, whereas SST plays a more important role in late‐ and post‐monsoon periods. The influence of OLTC is seen to be mostly confined to the Indian Ocean region, whereas the effect of SST indicates the climatic teleconnection between Indian regional rainfall and climate indices in Pacific and Atlantic Oceans. Copyright © 2006 John Wiley & Sons, Ltd.     

Probabilistic stability assessment of slopes using high dimensional model representation

This paper presents a new computational tool for probabilistic stability assessment of earth slopes/embankments. The method involves high dimensional model representation (HDMR) that facilitates lower dimensional approximation of the original limit state, response surface generation of HDMR component functions, and Monte Carlo simulation. HDMR is a general set of quantitative model assessment and analysis tools for capturing the high-dimensional relationships between sets of input and output model variables. It is a very efficient formulation of the system response, if higher-order variable correlations are weak, allowing the physical model to be captured by the first few lower-order terms. Once the approximate form of the original limit state is defined, the failure probability can be obtained by statistical simulation. Results of four numerical examples indicate that the proposed method provides accurate and computationally efficient estimates of the failure probability of earth slopes/embankments.     

Presence of radon in groundwater in parts of Bangalore

Presence of high levels of Radon (²²²Rn) gas was reported from groundwater in Bangalore. To ascertain the ground reality and the nature of the hazards, if any, a study was conducted by the Central Ground Water Board, Bangalore in and around Bangalore city. Groundwater samples from borewells and a dug well were collected and analysed. Available data on Radon gas from both groundwater and surface water sources were also compared. The presence of Radon gas and its concentration in groundwater were examined with respect to geology and well depths. The results are discussed in the paper.     

Calibration of the parameters for a hardening–softening constitutive model using genetic algorithms

The present paper introduces a genetic algorithm-based optimization technique to calibrate a nonlinear strain hardening–softening constitutive model for soils using five material parameters. The efficiency of the proposed technique is analyzed through the use of different GA techniques. The effects of elitism, crossover, and mutation, as well as population size, on the performance of the conventional GAs for this problem are investigated. Micro-genetic algorithms (mGAs) are chosen and tested for different population sizes. The mGAs with a population size of five yields the optimal parameter values after fewer function evaluations and capture the overall simulated or experimental behavior at every point in stress–strain and strain paths in triaxial compression. The proposed calibration technique is validated through comparison with the traditional calibration technique.