Correlative changes in metabolism and DNA damage in turbot (Scophthalmus maximus) exposed to benzo[a]pyrene

Juvenile turbot (Scophthalmus maximus) were injected intraperitoneally with either corn oil or 5 mg/kg benzo[a]pyrene (BaP) dissolved in corn oil and sampled I and 3 days after injection. After 1 day, no elevation of 7-ethoxyresorufin O-deethylase (EROD) activity was observed, however bile metabolites (BaP-7,8 dihydrodiol representing 70% of the total metabolites) and a single hepatic DNA adduct spot (0.47 adducts/10(8) nucleotides) identified by 32P-postlabelling were formed. No BaP metabolites or DNA adducts were observed in either control or carrier control fish. Fish sampled after 3 days reported 5-fold higher (P < 0.05) levels of EROD activity, a shift in the bile metabolite profile towards BaP phenol formation (1OH and 30H BaP comprising up to 60% of total metabolites detected) and the formation of two adduct spots (0.86 and 0.71 adducts/10(8) nucleotides). These results show that BaP can be metabolised and form hydrophobic DNA adducts in turbot without EROD elevation. Following EROD elevation, a shift in the profile of both BaP metabolites and BaP metabolite-DNA interactions occurs indicative of other oxidative processes.     

A singular evolutive extended Kalman filter to assimilate ocean color data in a coupled physical–biochemical model of the North Atlantic ocean

Within the European DIADEM project, a data assimilation system for coupled ocean circulation and marine ecosystem models has been implemented for the North Atlantic and the Nordic Seas. One objective of this project is to demonstrate the relevance of sophisticated methods to assimilate satellite data such as altimetry, surface temperature and ocean color, into realistic ocean models. In this paper, the singular evolutive extended Kalman (SEEK) filter, which is an advanced assimilation scheme where three-dimensional, multivariate error statistics are taken into account, is used to assimilate ocean color data into the biological component of the coupled system. The marine ecosystem model, derived from the FDM model [J. Mar. Res. 48 (1990) 591], includes 11 nitrogen and carbon compartments and describes the synthesis of organic matter in the euphotic zone, its consumption by animals of upper trophic levels, and the recycling of detritic material in the deep ocean. The circulation model coupled to the ecosystem is the Miami isopycnic coordinate ocean model (MICOM), which covers the Atlantic and the Arctic Oceans with an enhanced resolution in the North Atlantic basin. The model is forced with realistic ECMWF ocean/atmosphere fluxes, which permits to resolve the seasonal variability of the circulation and mixed layer properties. In the twin assimimation experiments reported here, the predictions of the coupled model are corrected every 10 days using pseudo-measurements of surface phytoplankton as a substitute to chlorophyll concentrations measured from space. The diagnostics of these experiments indicate that the assimilation is feasible with a reduced-order Kalman filter of small rank (of order 10) as long as a sufficiently good identification of the error structure is available. In addition, the control of non-observed quantities such as zooplankton and nitrate concentrations is made possible, owing to the multivariate nature of the analysis scheme. However, a too severe truncation of the error sub-space downgrades the propagation of surface information below the mixed layer. The reduction of the actual state vector to the surface layers is therefore investigated to improve the estimation process in the perspective of sea-viewing wide field-of-view sensor (SeaWiFS) data assimilation experiments.     

Ocean Waves: Half-a-Century of Discovery

While the nature of most ocean waves has long been known and their basic physics understood since the nineteenth century, intense study of ocean waves during the second half of the twentieth century has taken the subject from the realm of mathematical exercises to that of practical engineering. Modern understanding of the generation, propagation and interactions of ocean waves with each other and with oceanic features has advanced to a quantitative level offering predictive capacity. This paper presents a brief qualitative review of advances in knowledge of sound waves, wind waves, tsunamis, tides, internal waves and long-period vorticity waves. The review is aimed at non-specialists who may benefit from an overview of the current state of the subject and access to a bibliography of general-interest references. This revised version was published online in August 2006 with corrections to the Cover Date.     

Mid-Holocene evolution and paleoenvironments of the shoreface–offshore transition, north-eastern Argentina: New evidence based on benthic microfauna

A sedimentary record spanning 5792–5511 cal yr BP and 3188–2854 cal yr BP was recovered at 36° 45′ 43″ S–56 ° 37′ 13″ W, south-west South Atlantic. The sedimentological features and micropaleontological (benthic foraminifera and ostracoda) content were analyzed in order to reconstruct paleoenvironmental conditions. Considerable environmental fluctuations are indicated by all these proxies. Five different stages were distinguished: Stage 1 (ca. 5800–5000 cal yr BP) consists of muddy sand with abundant microfossils. In this interval, species typical for inner marine shelf environments maintained a high abundance. Stage 2 consists of plastic light greenish grey clays barren of microfossils, and probably represents fluvial input from the de la Plata River to the shelf contemporaneous of a lowering of sea level. Stage 3 is composed of brownish yellow sandy silts, and represents increasing marine conditions in the area as reflected by higher faunal diversity and typical foraminifera of inner shelf environments. Stage 4 is made of homogeneous mud, barren of microfossil, which represents a new pulse of fluvial input to the shelf in consequence of a new fall in sea level. The final part of the core (Stage 5) is a coarsening upward sequence, grading from greeny brown clayey sandy silts to coarse shelly sands and represents the modern sedimentation in the area. This interpretation strengthens the stepped model of late-Holocene sea-level fall between 5511–5792 cal yr BP and 2854–3188 cal yr BP in Buenos Aires coast, and agrees with the relative sea-level history previously proposed by some authors from western South Atlantic coasts.     

An overview and general results of the Lopez island OBS experiment

The purpose of the experiment was to determine the effects of coupling and bottom currents on ocean bottom seismometers. Twelve operational OBSs, three specially designed three-component systems, and a hydrophone were compared with each other. Unlike seismometers placed on hard rock at land stations, ocean bottom seismometers can be affected by soft sediments (which act as lossy mechanical springs) and by buoyancy. Coupling through soft sediments can modify the response to ground motion much as a low pass filter does, and high buoyancy tends to counteract this effect. These effects are observed in the Lopez data, which consist of signals from mechanical transient tests, cap shots, airgun pulses, and general background noise. The modification of response is pronounced for some instruments and barely noticeable in others. Instruments that stand high in the water relative to their base width tend to be susceptible to rocking motion that shows up as a mechanical cross coupling between horizontal and vertical motion. Correlation of Lopez results with coupling theory suggests that it is possible to design ocean bottom seismometers that will couple well to any sediment. Current levels at the Lopez site (<5 cm s^-1) were too small to produce noticeable effect on any of the instruments; however, the same design criteria that will minimize coupling problems will also lessen problems caused by ocean currents.Hawaii Institute of Geophysics Contribution No. 1171.