Effects of geomorphological zones, reefs and seasons on coral reef fish communities of Réunion Island, Mascarene Archipelago, SW Indian Ocean

The present work analyses the spatial and temporal fluctuations of fish communities on Réunion coral reef flats on three different reefs, each comprising three geomorphological zones, over eight seasons within a 6-year period. These three reefs are subjected to different environmental conditions and displayed various percentages of live coral cover. Our objectives were not only to describe the spatio-temporal patterns, but also to organize the factors involved in variation hierarchically, and to quantify the degree of community structuring that could be monitored over various spatial and temporal scales. We also focus on fish guilds to link the spatio-temporal patterns not only to species but also to the roles fish are playing (mainly involving trophic activity). We found that spatial attributes strongly determined fish distribution, with intra-reefal zones (back-reef, inner reef flat and outer reef flat) playing a much more important role than the different reefs. This suggests that the percentage of live coral cover of a given reef was less significant than its morpho-structural organization to explain fish distribution. Seasons had only a weak role in fish distribution, although fish communities were significantly more homogeneous in winter than in summer, possibly due to the arrival of numerous juveniles belonging to various species during summer settlement events. We also identified a marked temporal persistence of the spatial patterns found over the course of the study. This is discussed in relation to the current trend of increased surface seawater temperatures involved in the possible future increase in number/intensity of ENSO events. We consider the average squared Euclidian distance as a candidate for monitoring tools to quantify future changes in fish community structuring.     

Virioplankton distribution and activity in a tropical eutrophicated bay

The study of lysogeny in aquatic systems is an often overlooked aspect of microbial ecology, especially in tropical environments. Herein, the fraction of lysogenized cells (FLC) was detected in the surface waters of 20 coastal stations distributed from the eutrophicated shoreline to seaward waters of Hann Bay (Senegal). Concurrently, viral lytic infection rates were extrapolated from the frequency of visibly infected bacterial cells (FVIC), as determined from transmission electron microscopy observations. The experimental induction of prophage was observed in less than 3% of indigenous marine bacteria, suggesting that lysogenic stages of infection are rare in Hann Bay. Similarly, only 0.5–4.7% of bacteria showed visible signs of lytic infection. However, the positive correlation between the fraction of lysogenic and lytic cells (r = 0.67, p < 0.05, n = 20) may actually indicate that the coexistence of both lifestyles may be due to the massive and rapid induction of lysogens, potentially from the high levels of local UV radiation. Overall, we suggest that the determination of FVIC and FLC to examine the predominance of one type of cycle versus the other may be a source of misinterpretation in some particular aquatic environments.     

Preliminary study of fluxes of major lipid biomarker classes in the water column and sediments of Lake Baikal, Russia

The application of biomarker climate proxies to lacustrine settings requires a thorough understanding of those processes that give rise to and mediate in the burial and preservation of organic matter in the sediments. This information is to date missing for Lake Baikal in Central Asia. The biogeochemistry of the lake cannot be considered analogous to that in other lacustrine environments given its enormous size, depth, remote location and unique biology. The aim of this paper is to report on the main compound classes in the water column and sediments. As part of an ongoing evaluation of the inputs and fluxes of organic matter in Lake Baikal, we have found that there are significant differences in the inputs and preservation of organic matter between the North and South Basins. Both basins have dominant algal input and a contribution from the terrestrial plants of the lake edges and surrounding environments. However, the concentration of organic material in the sediment traps and sediments of the South Basin is much higher than that of the North Basin. In addition, the South Basin contains much higher proportions of the more labile material than does the North Basin. This is likely due to the South Basin being free of surface ice for a much longer time than the North, and in consequence, primary producers having an overall longer productive season. There is some evidence of microbial activity in the sediment traps and sediments from both the North and South Basins, but it does not appear to be more predominant in one basin than the other. It is probable that the differences in the composition and concentration of biomarkers in sediments between basins is due to the length of and the intensity of the productive season, which is in turn influenced by the climate.     

A regional and global analysis of carbon dioxide physiological forcing and its impact on climate

An increase in atmospheric carbon dioxide concentration has both a radiative (greenhouse) effect and a physiological effect on climate. The physiological effect forces climate as plant stomata do not open as wide under enhanced CO₂ levels and this alters the surface energy balance by reducing the evapotranspiration flux to the atmosphere, a process referred to as ‘carbon dioxide physiological forcing’. Here the climate impact of the carbon dioxide physiological forcing is isolated using an ensemble of twelve 5-year experiments with the Met Office Hadley Centre HadCM3LC fully coupled atmosphere–ocean model where atmospheric carbon dioxide levels are instantaneously quadrupled and thereafter held constant. Fast responses (within a few months) to carbon dioxide physiological forcing are analyzed at a global and regional scale. Results show a strong influence of the physiological forcing on the land surface energy budget, hydrological cycle and near surface climate. For example, global precipitation rate reduces by ~3% with significant decreases over most land-regions, mainly from reductions to convective rainfall. This fast hydrological response is still evident after 5 years of model integration. Decreased evapotranspiration over land also leads to land surface warming and a drying of near surface air, both of which lead to significant reductions in near surface relative humidity (~6%) and cloud fraction (~3%). Patterns of fast responses consistently show that results are largest in the Amazon and central African forest, and to a lesser extent in the boreal and temperate forest. Carbon dioxide physiological forcing could be a source of uncertainty in many model predicted quantities, such as climate sensitivity, transient climate response and the hydrological sensitivity. These results highlight the importance of including biological components of the Earth system in climate change studies.     

Habitat heterogeneity influences cold‐seep macrofaunal communities within and among seeps along the Norwegian margin. Part 1: macrofaunal community structure

Håkon Mosby mud volcano (HMMV) is one of the most active and most studied seep sites in European waters. Many authors have described its thermal activity, dynamic of mud flows, and geochemical and microbial processes. It is characterised by a concentric zonation of successive biogenic habitats related to an activity and geochemical gradient from its centre to its periphery. Around the central area covered by mud flows, white and grey microbial mats occur among areas of bare sediment, whereas siboglinid tubeworm fields of Sclerolinum contortum and/or Oligobrachia haakonmosbiensis colonise the peripheral areas. The meiofaunal community is known to be structured among habitats, but the macrofauna has rarely been investigated and has never been sampled in situ. As part of the European project HERMES, using the ROVs Victor 6000 and Quest 4000, we sampled quantitatively the different habitats of the volcano for macrofauna sensus lato, retained on a 250‐ or 500‐μm sieve. We also sampled a newly discovered pockmark on Storegga slide (cne 5.6) and two pockmarks (G11, G12) in the Nyegga area. Macrofauna was identified and counted from phylum to family level. Our results on HMMV showed a gradient of increasing density and diversity from the volcano centre (1–3 taxa; 260 ind·m^?2) to the peripheral siboglinid fields (8–14 taxa, 93,000 ind·m^?2), with an intermediate situation for microbial mats. For macrofauna ≥500 μm, non‐siboglinid polychaetes dominated the communities of the central mud volcano area, white mats and S. contortum fields (83, 89 and 37% of the total, respectively), whereas gastropods dominated grey mats and O. haakonmosbiensis fields (89 and 44% of the total, respectively). Polychaete families followed the same pattern of diversity according to habitats within HMMV. Of 23 polychaete families identified, only one occurred in the centre, and three in the microbial mats. Capitellidae and Dorvilleidae (typical of organically and sulphide‐enriched areas) occurred at remarkably high densities in white microbial mats and in O. haakonmosbiensis fields. The S. contortum fields were the most diverse habitat with 12 polychaete families. The 250‐μm fraction showed similar taxa dominating the habitats, but taking meiofauna into account, nematodes became the major taxon in white mats and in S. contortum fields, where they were particularly large in size, whereas copepods dominated in other habitats. Meiofauna and macrofauna did not show the same patterns of density according to habitats. Using principal components analysis the habitats at HMMV were clearly distinct, and clustered according to dominant species of siboglinids and type of microbial mats. Pockmarks at Nyegga showed a similar concentric pattern of habitats around fluid sources as on the volcano, which seemed similarly to influence macrofauna composition, but at a much smaller scale. Total taxa and polychaete diversity are high in the S. contortum fields in these pockmarks as well. Regional‐scale comparisons including HMMV and Storegga suggested a higher influence of habitat‐type than seep‐site on the community structure.     

Results of UHF radar observation of the nocturnal low-level jet for wind energy applications

We use two series of eight-month UHF radar observations collected during the dry and wet seasons of AMMA field campaign. The ultimate goal is to do preliminary work to know whether the lowest layers are suitable for wind energy applications. Surface wind is usually weak in West Africa, but the regular occurrence of a nocturnal low level jet (NLLJ) could provide interesting conditions for wind energy. This work is two-fold: it first aims at improving our knowledge about the NLLJ in West Africa regarding its structure and its variability during the year. Then, special attention is paid to the first 200 m agl, to study the possibility to use the sub-jet wind as a source of energy. A set of enhanced radio-soundings is taken to help to understand the dynamics and thermodynamics and to find a way to extrapolate the wind at low level, where the UHF radars do not provide data.     

Constraining groundwater modeling with magnetic resonance soundings

Magnetic resonance sounding (MRS) is a noninvasive geophysical method that allows estimating the free water content and transmissivity of aquifers. In this article, the ability of MRS to improve the reliability of a numerical groundwater model is assessed. Thirty-five sites were investigated by MRS over a ～5000 km(2) domain of the sedimentary Continental Terminal aquifer in SW Niger. Time domain electromagnetic soundings were jointly carried out to estimate the aquifer thickness. A groundwater model was previously built for this section of the aquifer and forced by the outputs from a distributed surface hydrology model, to simulate the observed long-term (1992 to 2003) rise in the water table. Uncertainty analysis had shown that independent estimates of the free water content and transmissivity values of the aquifer would facilitate cross-evaluation of the surface-water and groundwater models. MRS results indicate ranges for permeability (K = 1 × 10(-5) to 3 × 10(-4) m/s) and for free water content (w = 5% to 23% m(3) /m(3) ) narrowed by two orders of magnitude (K) and by ～50% (w), respectively, compared to the ranges of permeability and specific yield values previously considered. These shorter parameter ranges result in a reduction in the model's equifinality (whereby multiple combinations of model's parameters are able to represent the same observed piezometric levels), allowing a better constrained estimate to be derived for net aquifer recharge (～22 mm/year).     

Generalized total least squares to characterize biogeochemical processes of the ocean

The chemical composition of the global ocean is governed by biological, chemical, and physical processes. These processes interact with each other so that the concentrations of carbon, oxygen, nitrogen (mainly from nitrate, nitrite, ammonium), and phosphorous (mainly from phosphate), vary in constant proportions, referred to as the Redfield ratios. We construct here the generalized total least squares estimator of these ratios. The significance of our approach is twofold; it respects the hydrological characteristics of the studied areas, and it can be applied identically in any area where enough data are available. The tests applied to Atlantic Ocean data highlight a variability of the Redfield ratios, both with geographical location and with depth. This variability emphasizes the importance of local and accurate estimates of Redfield ratios.